Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005200

Physical Location & Seq

Genomic Coordinates Forward (+)

6782261 .. 6783245

Gene Structure 985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG042200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGCTTCAGATCCGACTAAAGAGCGTTGCACCAACCGAGGGCTCTCCCAGAGCACAAAACTTGCCGGCGGAGACCGTCACACTCGCTGGCCCTGACCACCTCGTCCTCGCCGACCTTCCGGTGGCCAAGGGCATTGGGTCGCCGGTCCCGTCGTCAGCTCGATTTGTTGTTTTGCAGGGACCTTTGGCTTTTTATAAGGGCTTCATCCCAAATTTTGGAATGCTAGGATCTTGGAATGTGATCATGTTTCTAACCTTTGAACAGGCAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006464 GO:0006725 GO:0006807 GO:0007162 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030100 GO:0030155 GO:0030334 GO:0030335 GO:0032259 GO:0032446 GO:0032879 GO:0032991 GO:0034641 GO:0034708 GO:0036211 GO:0036396 GO:0040012 GO:0040017 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045293 GO:0045807 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051270 GO:0051272 GO:0060627 GO:0065007 GO:0070647 GO:0071704 GO:0080009 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234 GO:2000145 GO:2000147

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

90

Amino Acids

9.55

Weight (kDa)

8.21

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005200)

Species	Orthologous Gene IDs
malus_domestica	MD10G1023200.v1.1
pyrus_communis	pycom15g27830
rosa_chinensis	RchiOBHm_Chr1g0317751 RchiOBHm_Chr1g0317841 RchiOBHm_Chr3g0492291
rosa_laevigata	RLG00000030580 RLG00000030581 RLG00000030583 RLG00000030585
rosa_multiflora	Rmu_co8140940.1_g000001 Rmu_sc0000654.1_g000001 Rmu_sc0006964.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113770
rosa_rugosa	Rorug01G0017100 Rorug01G0017600 Rorug01G0018000
rosa_samantha	Rh1BG025500 Rh1CG026600 Rh1DG018400 Rh1DG041800 Rh1DG042000 Rh1DG042200 Rh1DG042900 Rh1DG043700 Rh2AG344000 Rh2BG352500 Rh2CG331200 Rh2DG370500
rosa_wichuraiana	Rw1G001560 Rw1G002150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	195
AasI	GACNNNNNNGTC	1 cut(s)	101
AccB7I	CCANNNNNTGG	1 cut(s)	215
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	2 cut(s)	4, 235
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	211
AfiI	CCNNNNNNNGG	3 cut(s)	38, 121, 215
AgsI	TTSAA	1 cut(s)	260
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
Alw21I	GWGCWC	1 cut(s)	55
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	2 cut(s)	4, 235
AoxI	GGCC	2 cut(s)	88, 123
ApoI	RAATTY	1 cut(s)	211
AspS9I	GGNCC	3 cut(s)	89, 145, 179
AvaII	GGWCC	2 cut(s)	145, 179
BalI	TGGCCA	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	55
BclI	TGATCA	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	224
Bme18I	GGWCC	2 cut(s)	145, 179
BmgT120I	GGNCC	3 cut(s)	89, 145, 179
BmiI	GGNNCC	2 cut(s)	147, 180
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	2 cut(s)	36, 126
BsaWI	WCCGGW	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 121, 215
Bse118I	RCCGGY	2 cut(s)	64, 142
BseDI	CCNNGG	2 cut(s)	36, 126
BseGI	GGATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	3 cut(s)	38, 121, 215
BshFI	GGCC	2 cut(s)	90, 125
BsiHKAI	GWGCWC	1 cut(s)	55
BsiSI	CCGG	3 cut(s)	65, 119, 143
BslFI	GGGAC	2 cut(s)	131, 192
BslI	CCNNNNNNNGG	3 cut(s)	38, 121, 215
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	2 cut(s)	131, 192
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	2 cut(s)	90, 125
Bso31I	GGTCTC	1 cut(s)	65
Bsp1286I	GDGCHC	2 cut(s)	44, 55
Bsp143I	GATC	3 cut(s)	9, 227, 240
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	2 cut(s)	90, 125
BspLI	GGNNCC	2 cut(s)	147, 180
BspPI	GGATC	2 cut(s)	4, 235
BspTNI	GGTCTC	1 cut(s)	65
BsrFI	RCCGGY	2 cut(s)	64, 142
BssAI	RCCGGY	2 cut(s)	64, 142
BssECI	CCNNGG	2 cut(s)	36, 126
BssMI	GATC	3 cut(s)	9, 227, 240
BssT1I	CCWWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	76
BstC8I	GCNNGC	3 cut(s)	66, 88, 268
BstF5I	GGATG	1 cut(s)	204
BstKTI	GATC	3 cut(s)	12, 230, 243
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	3 cut(s)	9, 227, 240
BstX2I	RGATCY	2 cut(s)	9, 227
BstYI	RGATCY	2 cut(s)	9, 227
BsuRI	GGCC	2 cut(s)	90, 125
BtsCI	GGATG	1 cut(s)	204
Cac8I	GCNNGC	3 cut(s)	66, 88, 268
Cfr10I	RCCGGY	2 cut(s)	64, 142
Cfr13I	GGNCC	3 cut(s)	89, 145, 179
CviAII	CATG	1 cut(s)	244
CviJI	RGCY	7 cut(s)	42, 90, 125, 158, 188, 201, 270
CviKI_1	RGCY	7 cut(s)	42, 90, 125, 158, 188, 201, 270
DpnI	GATC	3 cut(s)	11, 229, 242
DpnII	GATC	3 cut(s)	9, 227, 240
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	44
Eco31I	GGTCTC	1 cut(s)	65
Eco47I	GGWCC	2 cut(s)	145, 179
EcoO109I	RGGNCCY	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	1 cut(s)	247
FaiI	YATR	2 cut(s)	195, 245
FaqI	GGGAC	2 cut(s)	131, 192
FatI	CATG	1 cut(s)	243
FbaI	TGATCA	1 cut(s)	240
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	1 cut(s)	44
FspBI	CTAG	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	90, 125
HapII	CCGG	3 cut(s)	65, 119, 143
Hin1II	CATG	1 cut(s)	247
HpaII	CCGG	3 cut(s)	65, 119, 143
Hpy188I	TCNGA	2 cut(s)	9, 14
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	2 cut(s)	29, 175
Hsp92II	CATG	1 cut(s)	247
KroI	GCCGGC	1 cut(s)	64
KroNI	GCCGGC	1 cut(s)	66
Ksp22I	TGATCA	1 cut(s)	240
Kzo9I	GATC	3 cut(s)	9, 227, 240
LpnPI	CCDG	9 cut(s)	61, 72, 78, 105, 132, 156, 161, 248, 252
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	3 cut(s)	11, 229, 242
MboI	GATC	3 cut(s)	9, 227, 240
MflI	RGATCY	2 cut(s)	9, 227
MhlI	GDGCHC	2 cut(s)	44, 55
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	1 cut(s)	211
MluNI	TGGCCA	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	3 cut(s)	31, 110, 116
Mox20I	TGGCCA	1 cut(s)	125
MroNI	GCCGGC	1 cut(s)	64
MscI	TGGCCA	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	125
MspI	CCGG	3 cut(s)	65, 119, 143
Mva1269I	GAATGC	1 cut(s)	225
NaeI	GCCGGC	1 cut(s)	66
NdeII	GATC	3 cut(s)	9, 227, 240
NgoMIV	GCCGGC	1 cut(s)	64
NlaIII	CATG	1 cut(s)	247
NlaIV	GGNNCC	2 cut(s)	147, 180
NmuCI	GTSAC	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 146
PctI	GAATGC	1 cut(s)	225
PdiI	GCCGGC	1 cut(s)	66
PflMI	CCANNNNNTGG	1 cut(s)	215
PpuMI	RGGWCCY	1 cut(s)	179
PsiI	TTATAA	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	179
PspN4I	GGNNCC	2 cut(s)	147, 180
PspPI	GGNCC	3 cut(s)	89, 145, 179
PspPPI	RGGWCCY	1 cut(s)	179
PsuI	RGATCY	2 cut(s)	9, 227
Sau3AI	GATC	3 cut(s)	9, 227, 240
Sau96I	GGNCC	3 cut(s)	89, 145, 179
SduI	GDGCHC	2 cut(s)	44, 55
SetI	ASST	5 cut(s)	102, 117, 160, 184, 257
SinI	GGWCC	2 cut(s)	145, 179
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	1 cut(s)	160
TasI	AATT	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	76
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	193
Van91I	CCANNNNNTGG	1 cut(s)	215
VpaK11BI	GGWCC	2 cut(s)	145, 179
XapI	RAATTY	1 cut(s)	211
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.