Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005200

Physical Location & Seq

Genomic Coordinates Reverse (-)

3406992 .. 3430713

Gene Structure 23722 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG025500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGGAGATTACCGAAAGCAGCTAGAGTATCTATTCATGCTCTTCATCTTTTCTCAGGTTAAGTCAAGAATGAAGGGAGATTCTTCTTCTTACAAAAACACGATCGATTGCTTCGTTAAAACTTTGAAGAATGATGGACCTTTGGCCTTTTATAAGGGCTTCATCTCAAATTTTGGACGGCTAGGATCTTGGAATGTGATCATGTTTCTAGCCCTTGAGCAGGCTAAGAGGTTCGTGAAAAGGCACTGTTCTTGTAAGCTCCACATTGACGATTTCTTCGAGGGCGTGTTTCTTGTTGGAGAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

102

Amino Acids

11.9

Weight (kDa)

9.24

Isoelectric Point (pI)

32.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	19 - 81	6.2e-13	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005200)

Species	Orthologous Gene IDs
malus_domestica	MD10G1023200.v1.1
pyrus_communis	pycom15g27830
rosa_chinensis	RchiOBHm_Chr1g0317751 RchiOBHm_Chr1g0317841 RchiOBHm_Chr3g0492291
rosa_laevigata	RLG00000030580 RLG00000030581 RLG00000030583 RLG00000030585
rosa_multiflora	Rmu_co8140940.1_g000001 Rmu_sc0000654.1_g000001 Rmu_sc0006964.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113770
rosa_rugosa	Rorug01G0017100 Rorug01G0017600 Rorug01G0018000
rosa_samantha	Rh1BG025500 Rh1CG026600 Rh1DG018400 Rh1DG041800 Rh1DG042000 Rh1DG042200 Rh1DG042900 Rh1DG043700 Rh2AG344000 Rh2BG352500 Rh2CG331200 Rh2DG370500
rosa_wichuraiana	Rw1G001560 Rw1G002150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	153
AclWI	GGATC	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	169
AfiI	CCNNNNNNNGG	1 cut(s)	220
AgsI	TTSAA	1 cut(s)	127
AluBI	AGCT	2 cut(s)	22, 259
AluI	AGCT	2 cut(s)	22, 259
AlwI	GGATC	1 cut(s)	193
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	19
ApoI	RAATTY	1 cut(s)	169
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AspS9I	GGNCC	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	1 cut(s)	194
BclI	TGATCA	1 cut(s)	198
BfaI	CTAG	3 cut(s)	23, 182, 209
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	236
Bsa29I	ATCGAT	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
BseCI	ATCGAT	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMII	CTCAG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	31
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	146
BshVI	ATCGAT	1 cut(s)	105
BsiEI	CGRYCG	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	220
BsnI	GGCC	1 cut(s)	146
Bsp143I	GATC	3 cut(s)	102, 185, 198
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	1 cut(s)	67
BspDI	ATCGAT	1 cut(s)	105
BspPI	GGATC	1 cut(s)	193
BspQI	GCTCTTC	1 cut(s)	47
BssMI	GATC	3 cut(s)	102, 185, 198
Bst4CI	ACNGT	1 cut(s)	248
Bst6I	CTCTTC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	2 cut(s)	54, 225
BstENI	CCTNNNNNAGG	1 cut(s)	218
BstKTI	GATC	3 cut(s)	105, 188, 201
BstMBI	GATC	3 cut(s)	102, 185, 198
BstMCI	CGRYCG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	146
BsuTUI	ATCGAT	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	137
ClaI	ATCGAT	1 cut(s)	105
CviAII	CATG	2 cut(s)	37, 202
CviJI	RGCY	7 cut(s)	22, 146, 159, 181, 212, 224, 259
CviKI_1	RGCY	7 cut(s)	22, 146, 159, 181, 212, 224, 259
DdeI	CTNAG	2 cut(s)	54, 225
DpnI	GATC	3 cut(s)	104, 187, 200
DpnII	GATC	3 cut(s)	102, 185, 198
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	218
FaeI	CATG	2 cut(s)	40, 205
FaiI	YATR	4 cut(s)	38, 153, 203, 307
FatI	CATG	2 cut(s)	36, 201
FbaI	TGATCA	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	20
FspBI	CTAG	3 cut(s)	23, 182, 209
GluI	GCNGC	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	146
Hin1II	CATG	2 cut(s)	40, 205
HinfI	GANTC	1 cut(s)	80
Hpy188III	TCNNGA	2 cut(s)	66, 235
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	248
HpyF3I	CTNAG	2 cut(s)	54, 225
Hsp92II	CATG	2 cut(s)	40, 205
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	3 cut(s)	102, 185, 198
LguI	GCTCTTC	1 cut(s)	47
LmnI	GCTCC	1 cut(s)	264
LpnPI	CCDG	2 cut(s)	41, 206
Lsp1109I	GCAGC	1 cut(s)	31
MaeI	CTAG	3 cut(s)	23, 182, 209
MalI	GATC	3 cut(s)	104, 187, 200
MboI	GATC	3 cut(s)	102, 185, 198
MboII	GAAGA	5 cut(s)	34, 75, 78, 139, 268
MflI	RGATCY	1 cut(s)	185
MluCI	AATT	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	2 cut(s)	222, 274
MseI	TTAA	2 cut(s)	60, 117
NdeII	GATC	3 cut(s)	102, 185, 198
NlaIII	CATG	2 cut(s)	40, 205
PciSI	GCTCTTC	1 cut(s)	47
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 276
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	21
Ple19I	CGATCG	1 cut(s)	105
PsiI	TTATAA	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	185
PvuI	CGATCG	1 cut(s)	105
SapI	GCTCTTC	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	60, 117
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	3 cut(s)	102, 185, 198
Sau96I	GGNCC	1 cut(s)	137
SetI	ASST	5 cut(s)	24, 60, 142, 233, 261
SinI	GGWCC	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	1 cut(s)	169
SspMI	CTAG	3 cut(s)	23, 182, 209
TaaI	ACNGT	1 cut(s)	248
TaqI	TCGA	2 cut(s)	105, 279
TasI	AATT	1 cut(s)	169
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	2 cut(s)	60, 117
Tru9I	TTAA	2 cut(s)	60, 117
TscAI	CASTG	1 cut(s)	251
TseI	GCWGC	1 cut(s)	19
TspDTI	ATGAA	4 cut(s)	25, 34, 86, 151
TspRI	CASTG	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	137
XagI	CCTNNNNNAGG	1 cut(s)	218
XapI	RAATTY	1 cut(s)	169
XspI	CTAG	3 cut(s)	23, 182, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.