Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8140940.1

Orthogroup ID

OG0005200

Physical Location & Seq

Genomic Coordinates Reverse (-)

122 .. 628

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8140940.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggtgaggatgcaggccgacggccggctcccggaggcgcagcgcaggaactacaagaacgtggtcgacgccatctcaaggatggcgaagcaggaaggggttactagcctgtggcgcgggtcgggtcttacggtgaaccgcgccatgatcgtgacggcgtcgcagctggcgtcgtacgaccagatcaaggaggcgattctagagaggcacgtgatggccgacgggctcggcacgcacgtgacagcgagtttcgcggcggggttcgtggcctcggtggcgtcgaacccggtggacgtgatcaagactagggtgatgaacatgaaggtggaggccgggagggagccgccgtacaccggggcattggattgtgccctgaagacggtgaaggctgaaggacccatggccctctacaagggtttcattcctacaatttcaaggcaggggcctttcactgtggtgctgtttgtgactcttgaacaactcaggaaggttttcaaggagttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

168

Amino Acids

18.43

Weight (kDa)

9.76

Isoelectric Point (pI)

24.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005200)

Species	Orthologous Gene IDs
malus_domestica	MD10G1023200.v1.1
pyrus_communis	pycom15g27830
rosa_chinensis	RchiOBHm_Chr1g0317751 RchiOBHm_Chr1g0317841 RchiOBHm_Chr3g0492291
rosa_laevigata	RLG00000030580 RLG00000030581 RLG00000030583 RLG00000030585
rosa_multiflora	Rmu_co8140940.1_g000001 Rmu_sc0000654.1_g000001 Rmu_sc0006964.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113770
rosa_rugosa	Rorug01G0017100 Rorug01G0017600 Rorug01G0018000
rosa_samantha	Rh1BG025500 Rh1CG026600 Rh1DG018400 Rh1DG041800 Rh1DG042000 Rh1DG042200 Rh1DG042900 Rh1DG043700 Rh2AG344000 Rh2BG352500 Rh2CG331200 Rh2DG370500
rosa_wichuraiana	Rw1G001560 Rw1G002150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	66
AccII	CGCG	3 cut(s)	117, 141, 254
AciI	CCGC	5 cut(s)	117, 139, 254, 257, 344
AcoI	YGGCCR	2 cut(s)	22, 216
AcuI	CTGAAG	2 cut(s)	395, 411
AcvI	CACGTG	2 cut(s)	211, 238
AcyI	GRCGYC	4 cut(s)	69, 158, 170, 278
AfaI	GTAC	2 cut(s)	176, 350
AfiI	CCNNNNNNNGG	7 cut(s)	24, 31, 78, 187, 353, 379, 412
AgsI	TTSAA	3 cut(s)	435, 476, 496
AjiI	CACGTC	1 cut(s)	295
AleI	CACNNNNGTG	2 cut(s)	236, 455
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
AoxI	GGCC	7 cut(s)	15, 22, 216, 267, 330, 402, 443
ApeKI	GCWGC	2 cut(s)	40, 163
Asp700I	GAANNNNTTC	1 cut(s)	491
AspLEI	GCGC	4 cut(s)	40, 45, 117, 143
AspS9I	GGNCC	3 cut(s)	395, 403, 443
AsuC2I	CCSGG	4 cut(s)	32, 287, 334, 355
AsuHPI	GGTGA	4 cut(s)	16, 145, 322, 394
AvaII	GGWCC	1 cut(s)	395
BaeGI	GKGCMC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	228
BbrPI	CACGTG	2 cut(s)	211, 238
BbsI	GAAGAC	1 cut(s)	383
BbvI	GCAGC	2 cut(s)	52, 175
BccI	CCATC	3 cut(s)	76, 80, 208
BceAI	ACGGC	3 cut(s)	37, 171, 331
BclI	TGATCA	1 cut(s)	297
BcnI	CCSGG	4 cut(s)	32, 287, 334, 355
BfaI	CTAG	3 cut(s)	105, 200, 306
BglI	GCCNNNNNGGC	1 cut(s)	275
BisI	GCNGC	4 cut(s)	41, 164, 255, 344
BlsI	GCNGC	4 cut(s)	42, 165, 256, 345
Bme1390I	CCNGG	4 cut(s)	32, 287, 334, 355
Bme18I	GGWCC	1 cut(s)	395
BmgBI	CACGTC	1 cut(s)	295
BmgT120I	GGNCC	3 cut(s)	395, 403, 443
BmiI	GGNNCC	4 cut(s)	29, 342, 397, 444
BmrFI	CCNGG	4 cut(s)	32, 287, 334, 355
BpiI	GAAGAC	1 cut(s)	383
BpuEI	CTTGAG	1 cut(s)	61
BpuMI	CCSGG	4 cut(s)	32, 287, 334, 355
BsaAI	YACGTR	2 cut(s)	211, 238
BsaHI	GRCGYC	4 cut(s)	69, 158, 170, 278
BsaJI	CCNNGG	3 cut(s)	270, 354, 399
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	7 cut(s)	24, 31, 78, 187, 353, 379, 412
Bse118I	RCCGGY	1 cut(s)	24
BseDI	CCNNGG	3 cut(s)	270, 354, 399
BseGI	GGATG	2 cut(s)	15, 87
BseLI	CCNNNNNNNGG	7 cut(s)	24, 31, 78, 187, 353, 379, 412
BseMII	CTCAG	1 cut(s)	496
BseSI	GKGCMC	1 cut(s)	373
BseX3I	CGGCCG	1 cut(s)	22
BseXI	GCAGC	2 cut(s)	52, 175
Bsh1236I	CGCG	3 cut(s)	117, 141, 254
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	7 cut(s)	17, 24, 218, 269, 332, 404, 445
BsiEI	CGRYCG	1 cut(s)	25
BsiSI	CCGG	5 cut(s)	25, 32, 287, 333, 354
BsiWI	CGTACG	1 cut(s)	174
BslI	CCNNNNNNNGG	7 cut(s)	24, 31, 78, 187, 353, 379, 412
BsnI	GGCC	7 cut(s)	17, 24, 218, 269, 332, 404, 445
Bsp1286I	GDGCHC	2 cut(s)	228, 373
Bsp143I	GATC	3 cut(s)	147, 183, 297
Bsp19I	CCATGG	1 cut(s)	399
BspACI	CCGC	5 cut(s)	117, 139, 254, 257, 344
BspANI	GGCC	7 cut(s)	17, 24, 218, 269, 332, 404, 445
BspCNI	CTCAG	1 cut(s)	495
BspFNI	CGCG	3 cut(s)	117, 141, 254
BspLI	GGNNCC	4 cut(s)	29, 342, 397, 444
BsrFI	RCCGGY	1 cut(s)	24
BssAI	RCCGGY	1 cut(s)	24
BssECI	CCNNGG	3 cut(s)	270, 354, 399
BssMI	GATC	3 cut(s)	147, 183, 297
BssNI	GRCGYC	4 cut(s)	69, 158, 170, 278
BssT1I	CCWWGG	1 cut(s)	399
Bst4CI	ACNGT	3 cut(s)	133, 382, 454
BstACI	GRCGYC	4 cut(s)	69, 158, 170, 278
BstBAI	YACGTR	2 cut(s)	211, 238
BstC8I	GCNNGC	4 cut(s)	15, 26, 168, 233
BstDEI	CTNAG	1 cut(s)	482
BstDSI	CCRYGG	1 cut(s)	399
BstENI	CCTNNNNNAGG	1 cut(s)	410
BstF5I	GGATG	2 cut(s)	15, 87
BstFNI	CGCG	3 cut(s)	117, 141, 254
BstHHI	GCGC	4 cut(s)	40, 45, 117, 143
BstKTI	GATC	3 cut(s)	150, 186, 300
BstMBI	GATC	3 cut(s)	147, 183, 297
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	4 cut(s)	114, 232, 251, 275
BstSCI	CCNGG	4 cut(s)	30, 285, 332, 353
BstSLI	GKGCMC	1 cut(s)	373
BstUI	CGCG	3 cut(s)	117, 141, 254
BstV1I	GCAGC	2 cut(s)	52, 175
BstV2I	GAAGAC	1 cut(s)	383
BstZI	CGGCCG	1 cut(s)	22
BsuRI	GGCC	7 cut(s)	17, 24, 218, 269, 332, 404, 445
BtgI	CCRYGG	1 cut(s)	399
BtrI	CACGTC	1 cut(s)	295
BtsCI	GGATG	2 cut(s)	15, 87
BtsIMutI	CAGTG	1 cut(s)	450
Cac8I	GCNNGC	4 cut(s)	15, 26, 168, 233
CfoI	GCGC	4 cut(s)	40, 45, 117, 143
Cfr10I	RCCGGY	1 cut(s)	24
Cfr13I	GGNCC	3 cut(s)	395, 403, 443
CseI	GACGC	4 cut(s)	77, 147, 159, 267
Csp6I	GTAC	2 cut(s)	175, 349
CviAII	CATG	3 cut(s)	145, 319, 400
CviQI	GTAC	2 cut(s)	175, 349
DdeI	CTNAG	1 cut(s)	482
DpnI	GATC	3 cut(s)	149, 185, 299
DpnII	GATC	3 cut(s)	147, 183, 297
EaeI	YGGCCR	2 cut(s)	22, 216
EagI	CGGCCG	1 cut(s)	22
EclXI	CGGCCG	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	395
Eco52I	CGGCCG	1 cut(s)	22
Eco57I	CTGAAG	2 cut(s)	395, 411
Eco72I	CACGTG	2 cut(s)	211, 238
EcoNI	CCTNNNNNAGG	1 cut(s)	410
EcoO109I	RGGNCCY	2 cut(s)	395, 443
EcoT14I	CCWWGG	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	3 cut(s)	148, 322, 403
FaiI	YATR	3 cut(s)	146, 320, 401
FatI	CATG	3 cut(s)	144, 318, 399
FauI	CCCGC	2 cut(s)	110, 250
FbaI	TGATCA	1 cut(s)	297
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	4 cut(s)	41, 164, 255, 344
FokI	GGATG	2 cut(s)	22, 94
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	4 cut(s)	41, 164, 255, 344
FspBI	CTAG	3 cut(s)	105, 200, 306
GlaI	GCGC	4 cut(s)	39, 44, 116, 142
GluI	GCNGC	4 cut(s)	41, 164, 255, 344
HaeIII	GGCC	7 cut(s)	17, 24, 218, 269, 332, 404, 445
HapII	CCGG	5 cut(s)	25, 32, 287, 333, 354
HgaI	GACGC	4 cut(s)	77, 147, 159, 267
HhaI	GCGC	4 cut(s)	40, 45, 117, 143
Hin1I	GRCGYC	4 cut(s)	69, 158, 170, 278
Hin1II	CATG	3 cut(s)	148, 322, 403
Hin6I	GCGC	4 cut(s)	38, 43, 115, 141
HinP1I	GCGC	4 cut(s)	38, 43, 115, 141
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	2 cut(s)	196, 469
HpaII	CCGG	5 cut(s)	25, 32, 287, 333, 354
HphI	GGTGA	4 cut(s)	16, 145, 322, 394
Hpy166II	GTNNAC	4 cut(s)	67, 136, 292, 351
Hpy188III	TCNNGA	5 cut(s)	151, 200, 301, 473, 484
Hpy8I	GTNNAC	4 cut(s)	67, 136, 292, 351
Hpy99I	CGWCG	6 cut(s)	23, 71, 163, 175, 224, 283
HpyAV	CCTTC	5 cut(s)	89, 316, 379, 386, 481
HpyCH4III	ACNGT	3 cut(s)	133, 382, 454
HpyCH4IV	ACGT	4 cut(s)	60, 210, 237, 294
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	4 cut(s)	114, 232, 251, 275
HpyF3I	CTNAG	1 cut(s)	482
HpySE526I	ACGT	4 cut(s)	60, 210, 237, 294
Hsp92I	GRCGYC	4 cut(s)	69, 158, 170, 278
Hsp92II	CATG	3 cut(s)	148, 322, 403
HspAI	GCGC	4 cut(s)	38, 43, 115, 141
KroI	GCCGGC	1 cut(s)	24
KroNI	GCCGGC	1 cut(s)	26
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	3 cut(s)	147, 183, 297
LmnI	GCTCC	2 cut(s)	33, 340
Lsp1109I	GCAGC	2 cut(s)	52, 175
MaeI	CTAG	3 cut(s)	105, 200, 306
MaeII	ACGT	4 cut(s)	60, 210, 237, 294
MaeIII	GTNAC	4 cut(s)	100, 151, 238, 466
MalI	GATC	3 cut(s)	149, 185, 299
MboI	GATC	3 cut(s)	147, 183, 297
MboII	GAAGA	1 cut(s)	388
MhlI	GDGCHC	2 cut(s)	228, 373
MluCI	AATT	1 cut(s)	429
MlyI	GAGTC	1 cut(s)	463
MnlI	CCTC	7 cut(s)	28, 184, 198, 280, 322, 330, 416
MroNI	GCCGGC	1 cut(s)	24
MroXI	GAANNNNTTC	1 cut(s)	491
MslI	CAYNNNNRTG	4 cut(s)	149, 236, 323, 455
MspA1I	CMGCKG	1 cut(s)	166
MspI	CCGG	5 cut(s)	25, 32, 287, 333, 354
MspR9I	CCNGG	4 cut(s)	32, 287, 334, 355
MteI	GCGCNGCGC	1 cut(s)	41
MvnI	CGCG	3 cut(s)	117, 141, 254
MwoI	GCNNNNNNNGC	4 cut(s)	114, 232, 251, 275
NaeI	GCCGGC	1 cut(s)	26
NciI	CCSGG	4 cut(s)	32, 287, 334, 355
NcoI	CCATGG	1 cut(s)	399
NdeII	GATC	3 cut(s)	147, 183, 297
NgoMIV	GCCGGC	1 cut(s)	24
NlaIII	CATG	3 cut(s)	148, 322, 403
NlaIV	GGNNCC	4 cut(s)	29, 342, 397, 444
NmeAIII	GCCGAG	1 cut(s)	207
NmuCI	GTSAC	3 cut(s)	151, 238, 466
OliI	CACNNNNGTG	2 cut(s)	236, 455
PcsI	WCGNNNNNNNCGW	4 cut(s)	167, 216, 234, 278
PdiI	GCCGGC	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	1 cut(s)	196
Pfl23II	CGTACG	1 cut(s)	174
PflFI	GACNNNGTC	1 cut(s)	157
PfoI	TCCNGGA	1 cut(s)	30
PkrI	GCNGC	4 cut(s)	42, 165, 256, 345
PleI	GAGTC	1 cut(s)	463
PmaCI	CACGTG	2 cut(s)	211, 238
PmlI	CACGTG	2 cut(s)	211, 238
PpsI	GAGTC	1 cut(s)	463
Ppu21I	YACGTR	2 cut(s)	211, 238
PpuMI	RGGWCCY	1 cut(s)	395
Psp5II	RGGWCCY	1 cut(s)	395
PspCI	CACGTG	2 cut(s)	211, 238
PspLI	CGTACG	1 cut(s)	174
PspN4I	GGNNCC	4 cut(s)	29, 342, 397, 444
PspPI	GGNCC	3 cut(s)	395, 403, 443
PspPPI	RGGWCCY	1 cut(s)	395
PsyI	GACNNNGTC	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	166
RsaI	GTAC	2 cut(s)	176, 350
RsaNI	GTAC	2 cut(s)	175, 349
RseI	CAYNNNNRTG	4 cut(s)	149, 236, 323, 455
SalI	GTCGAC	1 cut(s)	65
SatI	GCNGC	4 cut(s)	41, 164, 255, 344
Sau3AI	GATC	3 cut(s)	147, 183, 297
Sau96I	GGNCC	3 cut(s)	395, 403, 443
SchI	GAGTC	1 cut(s)	463
ScrFI	CCNGG	4 cut(s)	32, 287, 334, 355
SduI	GDGCHC	2 cut(s)	228, 373
SetI	ASST	7 cut(s)	63, 168, 213, 240, 297, 327, 492
SinI	GGWCC	1 cut(s)	395
SmiMI	CAYNNNNRTG	4 cut(s)	149, 236, 323, 455
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	1 cut(s)	429
SsiI	CCGC	5 cut(s)	117, 139, 254, 257, 344
SspMI	CTAG	3 cut(s)	105, 200, 306
StyD4I	CCNGG	4 cut(s)	30, 285, 332, 353
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	3 cut(s)	133, 382, 454
TaiI	ACGT	4 cut(s)	63, 213, 240, 297
TaqI	TCGA	2 cut(s)	66, 281
TasI	AATT	1 cut(s)	429
TauI	GCSGC	2 cut(s)	257, 346
TfiI	GAWTC	1 cut(s)	196
TscAI	CASTG	1 cut(s)	457
TseFI	GTSAC	3 cut(s)	151, 238, 466
TseI	GCWGC	2 cut(s)	40, 163
Tsp45I	GTSAC	3 cut(s)	151, 238, 466
TspDTI	ATGAA	3 cut(s)	329, 335, 409
TspRI	CASTG	1 cut(s)	457
Tth111I	GACNNNGTC	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	395
XagI	CCTNNNNNAGG	1 cut(s)	410
XbaI	TCTAGA	1 cut(s)	199
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	66
XmnI	GAANNNNTTC	1 cut(s)	491
XspI	CTAG	3 cut(s)	105, 200, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.