Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005200

Physical Location & Seq

Genomic Coordinates Reverse (-)

3895361 .. 3897322

Gene Structure 1962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G002150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGATGTTTCCCGAAAGAATGATGTTTCAGATACTTGGCTTTGACCCGCGAAACCCACCGTCTCACTCTCAAAGTCTCAACGAGGACTCTCCCGGAGGCCGGCGCAGAAAACCTTGCCGGCGGAGATCGTCAAAGTCGTTTTCCCTGACCACCTCATCCTCGCCGACCTTCCGGTGGCCAAGGTCATTGGGTCAGCCACCGCAGCTTCGCCTGTCAAGACAATCGGTTGCCGGTCCCGTCGTCAGCTCGGTGAACGTGTCCACTTCTGTGTTCGCTGTGATTTCCAGATTGCTATCTATGGAAGGCTGGGACTTCAGCCCAAATTTTGGAAGGCTAGGTTCTTGGAATGTGATCATGTTTCTAACCTTTGAGCAGAACTGCAAGAACAAGTATCAAAGCATCTTTTCCGGGCAGCAGACGTCAGATACAAAGAAAGAAGAGACATCTTGCATCTGCGGATGGTATTGCCCATGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

159

Amino Acids

18.08

Weight (kDa)

9.9

Isoelectric Point (pI)

84.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005200)

Species	Orthologous Gene IDs
malus_domestica	MD10G1023200.v1.1
pyrus_communis	pycom15g27830
rosa_chinensis	RchiOBHm_Chr1g0317751 RchiOBHm_Chr1g0317841 RchiOBHm_Chr3g0492291
rosa_laevigata	RLG00000030580 RLG00000030581 RLG00000030583 RLG00000030585
rosa_multiflora	Rmu_co8140940.1_g000001 Rmu_sc0000654.1_g000001 Rmu_sc0006964.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113770
rosa_rugosa	Rorug01G0017100 Rorug01G0017600 Rorug01G0018000
rosa_samantha	Rh1BG025500 Rh1CG026600 Rh1DG018400 Rh1DG041800 Rh1DG042000 Rh1DG042200 Rh1DG042900 Rh1DG043700 Rh2AG344000 Rh2BG352500 Rh2CG331200 Rh2DG370500
rosa_wichuraiana	Rw1G001560 Rw1G002150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	422
AccB7I	CCANNNNNTGG	1 cut(s)	326
AccII	CGCG	1 cut(s)	49
AciI	CCGC	4 cut(s)	47, 121, 200, 456
AcoI	YGGCCR	1 cut(s)	176
AcsI	RAATTY	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	298
AcyI	GRCGYC	1 cut(s)	419
AfiI	CCNNNNNNNGG	3 cut(s)	99, 174, 326
AflIII	ACRYGT	1 cut(s)	255
AleI	CACNNNNGTG	1 cut(s)	266
AluBI	AGCT	2 cut(s)	205, 246
AluI	AGCT	2 cut(s)	205, 246
Alw26I	GTCTC	3 cut(s)	66, 80, 434
AoxI	GGCC	2 cut(s)	97, 176
ApeKI	GCWGC	2 cut(s)	202, 412
ApoI	RAATTY	1 cut(s)	322
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	2 cut(s)	93, 409
AsuHPI	GGTGA	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	178
BbvI	GCAGC	2 cut(s)	214, 424
BccI	CCATC	1 cut(s)	453
BclI	TGATCA	1 cut(s)	351
BcnI	CCSGG	2 cut(s)	93, 409
BcoDI	GTCTC	3 cut(s)	66, 80, 434
BfaI	CTAG	1 cut(s)	335
BisI	GCNGC	2 cut(s)	203, 413
BlsI	GCNGC	2 cut(s)	204, 414
Bme1390I	CCNGG	2 cut(s)	93, 409
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	2 cut(s)	93, 409
BmsI	GCATC	2 cut(s)	408, 459
BpuMI	CCSGG	2 cut(s)	93, 409
BsaBI	GATNNNNATC	1 cut(s)	292
BsaHI	GRCGYC	1 cut(s)	419
BsaJI	CCNNGG	1 cut(s)	179
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	3 cut(s)	99, 174, 326
Bse118I	RCCGGY	3 cut(s)	99, 117, 230
Bse8I	GATNNNNATC	1 cut(s)	292
BseDI	CCNNGG	1 cut(s)	179
BseGI	GGATG	2 cut(s)	155, 464
BseJI	GATNNNNATC	1 cut(s)	292
BseLI	CCNNNNNNNGG	3 cut(s)	99, 174, 326
BseXI	GCAGC	2 cut(s)	214, 424
BseYI	CCCAGC	1 cut(s)	306
Bsh1236I	CGCG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	99, 178
BsiSI	CCGG	6 cut(s)	93, 100, 118, 172, 231, 408
BslFI	GGGAC	2 cut(s)	219, 323
BslI	CCNNNNNNNGG	3 cut(s)	99, 174, 326
BsmAI	GTCTC	3 cut(s)	66, 80, 434
BsmBI	CGTCTC	1 cut(s)	66
BsmFI	GGGAC	2 cut(s)	219, 323
BsnI	GGCC	2 cut(s)	99, 178
Bsp143I	GATC	2 cut(s)	125, 351
BspACI	CCGC	4 cut(s)	47, 121, 200, 456
BspANI	GGCC	2 cut(s)	99, 178
BspFNI	CGCG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	235
BsrFI	RCCGGY	3 cut(s)	99, 117, 230
BssAI	RCCGGY	3 cut(s)	99, 117, 230
BssECI	CCNNGG	1 cut(s)	179
BssMI	GATC	2 cut(s)	125, 351
BssNI	GRCGYC	1 cut(s)	419
BssT1I	CCWWGG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	60
Bst6I	CTCTTC	1 cut(s)	432
BstACI	GRCGYC	1 cut(s)	419
BstC8I	GCNNGC	2 cut(s)	101, 119
BstF5I	GGATG	2 cut(s)	155, 464
BstFNI	CGCG	1 cut(s)	49
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	2 cut(s)	128, 354
BstMAI	GTCTC	3 cut(s)	66, 80, 434
BstMBI	GATC	2 cut(s)	125, 351
BstMWI	GCNNNNNNNGC	1 cut(s)	202
BstSCI	CCNGG	2 cut(s)	91, 407
BstUI	CGCG	1 cut(s)	49
BstV1I	GCAGC	2 cut(s)	214, 424
BsuRI	GGCC	2 cut(s)	99, 178
BtsCI	GGATG	2 cut(s)	155, 464
Cac8I	GCNNGC	2 cut(s)	101, 119
CfoI	GCGC	1 cut(s)	105
Cfr10I	RCCGGY	3 cut(s)	99, 117, 230
Cfr13I	GGNCC	1 cut(s)	233
CviAII	CATG	2 cut(s)	355, 471
CviJI	RGCY	9 cut(s)	39, 99, 178, 196, 205, 246, 306, 318, 334
CviKI_1	RGCY	9 cut(s)	39, 99, 178, 196, 205, 246, 306, 318, 334
DpnI	GATC	2 cut(s)	127, 353
DpnII	GATC	2 cut(s)	125, 351
EaeI	YGGCCR	1 cut(s)	176
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
EciI	GGCGGA	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	179
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	2 cut(s)	358, 474
FaiI	YATR	3 cut(s)	299, 356, 472
FaqI	GGGAC	2 cut(s)	219, 323
FatI	CATG	2 cut(s)	354, 470
FauI	CCCGC	1 cut(s)	54
FbaI	TGATCA	1 cut(s)	351
Fnu4HI	GCNGC	2 cut(s)	203, 413
FokI	GGATG	2 cut(s)	142, 471
Fsp4HI	GCNGC	2 cut(s)	203, 413
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	2 cut(s)	203, 413
GsaI	CCCAGC	1 cut(s)	310
HaeIII	GGCC	2 cut(s)	99, 178
HapII	CCGG	6 cut(s)	93, 100, 118, 172, 231, 408
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	419
Hin1II	CATG	2 cut(s)	358, 474
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	6 cut(s)	93, 100, 118, 172, 231, 408
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	2 cut(s)	253, 261
Hpy188I	TCNGA	2 cut(s)	30, 424
Hpy188III	TCNNGA	3 cut(s)	11, 216, 285
Hpy8I	GTNNAC	2 cut(s)	253, 261
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	3 cut(s)	178, 296, 324
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	2 cut(s)	255, 419
HpyCH4V	TGCA	2 cut(s)	381, 450
HpyF10VI	GCNNNNNNNGC	1 cut(s)	202
HpySE526I	ACGT	2 cut(s)	255, 419
Hsp92I	GRCGYC	1 cut(s)	419
Hsp92II	CATG	2 cut(s)	358, 474
HspAI	GCGC	1 cut(s)	103
KroI	GCCGGC	2 cut(s)	99, 117
KroNI	GCCGGC	2 cut(s)	101, 119
Ksp22I	TGATCA	1 cut(s)	351
Kzo9I	GATC	2 cut(s)	125, 351
Lsp1109I	GCAGC	2 cut(s)	214, 424
LweI	GCATC	2 cut(s)	408, 459
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	2 cut(s)	255, 419
MalI	GATC	2 cut(s)	127, 353
MboI	GATC	2 cut(s)	125, 351
MboII	GAAGA	1 cut(s)	449
MlsI	TGGCCA	1 cut(s)	178
MluCI	AATT	1 cut(s)	322
MluNI	TGGCCA	1 cut(s)	178
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	4 cut(s)	76, 89, 163, 169
Mox20I	TGGCCA	1 cut(s)	178
MroNI	GCCGGC	2 cut(s)	99, 117
MscI	TGGCCA	1 cut(s)	178
MslI	CAYNNNNRTG	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	178
MspI	CCGG	6 cut(s)	93, 100, 118, 172, 231, 408
MspR9I	CCNGG	2 cut(s)	93, 409
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	1 cut(s)	202
NaeI	GCCGGC	2 cut(s)	101, 119
NciI	CCSGG	2 cut(s)	93, 409
NdeII	GATC	2 cut(s)	125, 351
NgoMIV	GCCGGC	2 cut(s)	99, 117
NlaIII	CATG	2 cut(s)	358, 474
NlaIV	GGNNCC	1 cut(s)	235
OliI	CACNNNNGTG	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	1 cut(s)	134
PdiI	GCCGGC	2 cut(s)	101, 119
PflMI	CCANNNNNTGG	1 cut(s)	326
PfoI	TCCNGGA	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	204, 414
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
PspFI	CCCAGC	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	233
RseI	CAYNNNNRTG	1 cut(s)	266
SatI	GCNGC	2 cut(s)	203, 413
Sau3AI	GATC	2 cut(s)	125, 351
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	2 cut(s)	93, 409
SfaNI	GCATC	2 cut(s)	408, 459
SinI	GGWCC	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	1 cut(s)	322
SsiI	CCGC	4 cut(s)	47, 121, 200, 456
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	2 cut(s)	91, 407
StyI	CCWWGG	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	2 cut(s)	258, 422
TasI	AATT	1 cut(s)	322
TseI	GCWGC	2 cut(s)	202, 412
Van91I	CCANNNNNTGG	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	233
XapI	RAATTY	1 cut(s)	322
XspI	CTAG	1 cut(s)	335
ZraI	GACGTC	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.