Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004058

Physical Location & Seq

Genomic Coordinates Forward (+)

41211767 .. 41216190

Gene Structure 4424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1334800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGAAGGGATTATTCAAGTCCAAGCCCCGAACCCCCGCCGACATCGTTCGTCAGACCCGGGATTTACTCGTCTATGCCCAGCGCGCTCCCGATTCTCGCGAAAGCAAACGCGAGGAAAAGATGTCAGAGCTATGTAAAAACATAAGGGAGCTGAAGTCGATTCTCTACGGCAATAGTGAGTCTGAACCCGTTTCAGAAGCTTGTGCCCAGTTGACTCATGAGTTTTTTAAAGAGAACACACTTCGACTTCTTATTACATGTCTTCCGAAATTGAACTTGGAGGCTCGAAAGGATGCCACTCAAGTTGTTGCAAATTTGCAAAGGCAACAAGTTCAGTCCAAGTTGATTGCATCTGATTACTTGGAAGCGAACATTGATTTGATGGATATTTTGATCCAAGGGTATGGAAATTCCGACATGGCTCTGCATTATGGTGCAATGTTGAGGGAGTGCATACGTCACCAAAGCGTTGCAAGATATGTTTTAGAATCAGAACACATGAAGAAGTTCTTTGATTATATACAACTCCCCAATTTCGATATTGCGGCAGATGCTGCTGCAACTTTTAAGGAGCTCTTGACGAGGCACAAATCTACTGTAGCAGATTTTCTTTCCAAGAACTATGATTGGTTTTTCGCGGAGTATAACTCAAAGCTACTGGAATCACCCAATTACATTACCAGACGACAAGCTGTTAAGTTGTTAGGAGATATTTTGTTGGATCGGTCAAACTCAGCTGTGATGACTCGATATGTGAGCTCAAGGGACAACTTGAGGATCCTTATGAACCTTCTCAGAGAGTCAAGCAAAAGCATTCAGATCGAAGCATTTCATGTTTTCAAGCTATTTGCTGCTAATCAAAATAAACCCGCCGACATTGTGAGCATACTTGTTGCCAATAGAAGCAAACTTCTACGACTGTTTGCTGATTTTAAGATAGATAAAGAGGATGAACAATTTGAGGCAGACAAAGCTCAAGTAGTGAGAGAAATAGCTGCCATGGAACCTAAAGACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04150 ko04152 map04150 map04152

Pfam Domains

Protein Families

Mo25

Protein Analysis

340

Amino Acids

39.03

Weight (kDa)

8.49

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mo25	PF08569	4 - 334	3.7e-134	Mo25-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03410 AT4G17270 AT5G47540
fragaria_vesca	FvH4_3g00790 FvH4_6g41330
malus_domestica	MD05G1359100.v1.1 MD09G1120500.v1.1 MD10G1334800.v1.1 MD17G1111400.v1.1
prunus_persica	Prupe.3G203000_v2.0.a1 Prupe.4G008800_v2.0.a1
pyrus_communis	pycom05g32450 pycom10g28460
rosa_chinensis	RchiOBHm_Chr2g0156881 RchiOBHm_Chr5g0001041
rosa_laevigata	RLG00000020949 RLG00000030916
rosa_multiflora	Rmu_sc0000255.1_g000032 Rmu_sc0004189.1_g000003 Rmu_sc0011756.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075250 Rroxscaffold_2G00092630
rosa_rugosa	Rorug02G0456900 Rorug04G0389200
rosa_samantha	Rh2AG522500 Rh2BG535800 Rh2CG507400 Rh2DG544800 Rh5AG008400 Rh5CG009100 Rh5DG009300
rosa_wichuraiana	Rw2G043150 Rw5G000860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	84, 99, 111, 638
AciI	CCGC	4 cut(s)	36, 545, 638, 870
AclWI	GGATC	4 cut(s)	388, 729, 772, 785
AcsI	RAATTY	2 cut(s)	313, 409
AcuI	CTGAAG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	257
AgsI	TTSAA	3 cut(s)	16, 274, 841
AjuI	GAANNNNNNNTTGG	2 cut(s)	260, 292
Alw21I	GWGCWC	2 cut(s)	576, 761
AlwI	GGATC	4 cut(s)	388, 729, 772, 785
AlwNI	CAGNNNCTG	1 cut(s)	554
Ama87I	CYCGRG	1 cut(s)	57
ApeKI	GCWGC	4 cut(s)	554, 557, 851, 995
ApoI	RAATTY	2 cut(s)	313, 409
Asp700I	GAANNNNTTC	2 cut(s)	506, 828
AspLEI	GCGC	2 cut(s)	84, 86
AsuC2I	CCSGG	2 cut(s)	58, 59
AsuHPI	GGTGA	2 cut(s)	452, 657
AvaI	CYCGRG	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	208
BamHI	GGATCC	1 cut(s)	777
BanII	GRGCYC	2 cut(s)	576, 761
BbsI	GAAGAC	1 cut(s)	254
Bbv12I	GWGCWC	2 cut(s)	576, 761
BbvI	GCAGC	4 cut(s)	541, 544, 838, 982
BccI	CCATC	1 cut(s)	376
BceAI	ACGGC	1 cut(s)	184
BcgI	CGANNNNNNTGC	2 cut(s)	802, 836
BcnI	CCSGG	2 cut(s)	58, 59
BfmI	CTRYAG	1 cut(s)	597
BisI	GCNGC	5 cut(s)	546, 555, 558, 852, 996
BlsI	GCNGC	5 cut(s)	547, 556, 559, 853, 997
Bme1390I	CCNGG	2 cut(s)	58, 59
BmeT110I	CYCGRG	1 cut(s)	57
BmiI	GGNNCC	2 cut(s)	779, 1005
BmrFI	CCNGG	2 cut(s)	58, 59
BmrI	ACTGGG	1 cut(s)	202
BmsI	GCATC	3 cut(s)	283, 359, 541
BmuI	ACTGGG	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	254
BplI	GAGNNNNNCTC	2 cut(s)	632, 664
BpuEI	CTTGAG	4 cut(s)	285, 745, 793, 960
BpuMI	CCSGG	2 cut(s)	58, 59
BsaJI	CCNNGG	3 cut(s)	57, 397, 999
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bse1I	ACTGG	2 cut(s)	208, 663
Bse3DI	GCAATG	1 cut(s)	444
BseDI	CCNNGG	3 cut(s)	57, 397, 999
BseGI	GGATG	2 cut(s)	298, 955
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	2 cut(s)	747, 808
BseNI	ACTGG	2 cut(s)	208, 663
BsePI	GCGCGC	1 cut(s)	82
BseSI	GKGCMC	1 cut(s)	208
BseXI	GCAGC	4 cut(s)	541, 544, 838, 982
BseYI	CCCAGC	1 cut(s)	78
Bsh1236I	CGCG	4 cut(s)	84, 99, 111, 638
BsiHKAI	GWGCWC	2 cut(s)	576, 761
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	58
BslFI	GGGAC	1 cut(s)	779
BsmFI	GGGAC	1 cut(s)	779
BsmI	GAATGC	1 cut(s)	813
BsoBI	CYCGRG	1 cut(s)	57
Bsp1286I	GDGCHC	3 cut(s)	208, 576, 761
Bsp143I	GATC	4 cut(s)	393, 721, 777, 819
Bsp19I	CCATGG	1 cut(s)	999
Bsp68I	TCGCGA	1 cut(s)	99
BspACI	CCGC	4 cut(s)	36, 545, 638, 870
BspCNI	CTCAG	2 cut(s)	746, 807
BspFNI	CGCG	4 cut(s)	84, 99, 111, 638
BspHI	TCATGA	2 cut(s)	217, 1016
BspLI	GGNNCC	2 cut(s)	779, 1005
BspPI	GGATC	4 cut(s)	388, 729, 772, 785
BsrDI	GCAATG	1 cut(s)	444
BsrI	ACTGG	2 cut(s)	208, 663
BssECI	CCNNGG	3 cut(s)	57, 397, 999
BssHII	GCGCGC	1 cut(s)	82
BssMI	GATC	4 cut(s)	393, 721, 777, 819
BssT1I	CCWWGG	2 cut(s)	397, 999
Bst4CI	ACNGT	2 cut(s)	598, 921
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	2 cut(s)	733, 794
BstDSI	CCRYGG	1 cut(s)	999
BstF5I	GGATG	2 cut(s)	298, 955
BstFNI	CGCG	4 cut(s)	84, 99, 111, 638
BstHHI	GCGC	2 cut(s)	84, 86
BstKTI	GATC	4 cut(s)	396, 724, 780, 822
BstMBI	GATC	4 cut(s)	393, 721, 777, 819
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 551, 554, 971
BstNSI	RCATGY	1 cut(s)	261
BstSCI	CCNGG	2 cut(s)	56, 57
BstSFI	CTRYAG	1 cut(s)	597
BstSLI	GKGCMC	1 cut(s)	208
BstUI	CGCG	4 cut(s)	84, 99, 111, 638
BstV1I	GCAGC	4 cut(s)	541, 544, 838, 982
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	1 cut(s)	777
BstXI	CCANNNNNNTGG	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	777
BtgI	CCRYGG	1 cut(s)	999
BtsCI	GGATG	2 cut(s)	298, 955
BtuMI	TCGCGA	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	84
CaiI	CAGNNNCTG	1 cut(s)	554
CciI	TCATGA	2 cut(s)	217, 1016
CfoI	GCGC	2 cut(s)	84, 86
Cfr9I	CCCGGG	1 cut(s)	57
CspCI	CAANNNNNGTGG	2 cut(s)	286, 321
CviAII	CATG	7 cut(s)	218, 258, 418, 499, 833, 1000, 1017
DdeI	CTNAG	2 cut(s)	733, 794
DpnI	GATC	4 cut(s)	395, 723, 779, 821
DpnII	GATC	4 cut(s)	393, 721, 777, 819
DraI	TTTAAA	1 cut(s)	229
Ecl136II	GAGCTC	2 cut(s)	574, 759
Eco130I	CCWWGG	2 cut(s)	397, 999
Eco24I	GRGCYC	2 cut(s)	576, 761
Eco53kI	GAGCTC	2 cut(s)	574, 759
Eco57I	CTGAAG	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	57
EcoICRI	GAGCTC	2 cut(s)	574, 759
EcoT14I	CCWWGG	2 cut(s)	397, 999
EcoT38I	GRGCYC	2 cut(s)	576, 761
ErhI	CCWWGG	2 cut(s)	397, 999
FaeI	CATG	7 cut(s)	221, 261, 421, 502, 836, 1003, 1020
FalI	AAGNNNNNCTT	4 cut(s)	494, 526, 560, 592
FaqI	GGGAC	1 cut(s)	779
FatI	CATG	7 cut(s)	217, 257, 417, 498, 832, 999, 1016
FauI	CCCGC	2 cut(s)	43, 877
Fnu4HI	GCNGC	5 cut(s)	546, 555, 558, 852, 996
FokI	GGATG	2 cut(s)	305, 962
FriOI	GRGCYC	2 cut(s)	576, 761
Fsp4HI	GCNGC	5 cut(s)	546, 555, 558, 852, 996
GlaI	GCGC	2 cut(s)	83, 85
GluI	GCNGC	5 cut(s)	546, 555, 558, 852, 996
GsaI	CCCAGC	1 cut(s)	82
HapII	CCGG	1 cut(s)	58
HhaI	GCGC	2 cut(s)	84, 86
Hin1II	CATG	7 cut(s)	221, 261, 421, 502, 836, 1003, 1020
Hin6I	GCGC	2 cut(s)	82, 84
HinP1I	GCGC	2 cut(s)	82, 84
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HindIII	AAGCTT	1 cut(s)	198
HinfI	GANTC	9 cut(s)	92, 160, 179, 214, 488, 662, 745, 800, 1013
HpaII	CCGG	1 cut(s)	58
HphI	GGTGA	2 cut(s)	452, 657
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188III	TCNNGA	5 cut(s)	89, 98, 218, 577, 1017
Hpy8I	GTNNAC	1 cut(s)	213
HpyAV	CCTTC	1 cut(s)	800
HpyCH4III	ACNGT	2 cut(s)	598, 921
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	8 cut(s)	311, 319, 350, 427, 437, 453, 473, 560
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 551, 554, 971
HpyF3I	CTNAG	2 cut(s)	733, 794
HpySE526I	ACGT	1 cut(s)	457
Hsp92II	CATG	7 cut(s)	221, 261, 421, 502, 836, 1003, 1020
HspAI	GCGC	2 cut(s)	82, 84
Kzo9I	GATC	4 cut(s)	393, 721, 777, 819
LmnI	GCTCC	3 cut(s)	91, 148, 571
LpnPI	CCDG	5 cut(s)	71, 92, 221, 644, 694
Lsp1109I	GCAGC	4 cut(s)	541, 544, 838, 982
LweI	GCATC	3 cut(s)	283, 359, 541
MaeII	ACGT	1 cut(s)	457
MaeIII	GTNAC	1 cut(s)	458
MalI	GATC	4 cut(s)	395, 723, 779, 821
MboI	GATC	4 cut(s)	393, 721, 777, 819
MboII	GAAGA	2 cut(s)	254, 514
MflI	RGATCY	1 cut(s)	777
MhlI	GDGCHC	3 cut(s)	208, 576, 761
MluCI	AATT	6 cut(s)	269, 313, 409, 532, 670, 956
MlyI	GAGTC	5 cut(s)	188, 208, 739, 809, 1007
MmeI	TCCRAC	2 cut(s)	438, 699
MnlI	CCTC	7 cut(s)	106, 274, 438, 576, 768, 940, 955
MroXI	GAANNNNTTC	2 cut(s)	506, 828
MseI	TTAA	4 cut(s)	228, 567, 696, 933
MslI	CAYNNNNRTG	1 cut(s)	432
MspA1I	CMGCKG	1 cut(s)	737
MspI	CCGG	1 cut(s)	58
MspR9I	CCNGG	2 cut(s)	58, 59
Mva1269I	GAATGC	1 cut(s)	813
MvnI	CGCG	4 cut(s)	84, 99, 111, 638
MwoI	GCNNNNNNNGC	4 cut(s)	83, 551, 554, 971
NciI	CCSGG	2 cut(s)	58, 59
NcoI	CCATGG	1 cut(s)	999
NdeII	GATC	4 cut(s)	393, 721, 777, 819
NlaIII	CATG	7 cut(s)	221, 261, 421, 502, 836, 1003, 1020
NlaIV	GGNNCC	2 cut(s)	779, 1005
NmuCI	GTSAC	1 cut(s)	458
NruI	TCGCGA	1 cut(s)	99
NspI	RCATGY	1 cut(s)	261
PagI	TCATGA	2 cut(s)	217, 1016
PauI	GCGCGC	1 cut(s)	82
PciI	ACATGT	1 cut(s)	257
PctI	GAATGC	1 cut(s)	813
PdmI	GAANNNNTTC	2 cut(s)	506, 828
PfeI	GAWTC	4 cut(s)	92, 160, 488, 662
PkrI	GCNGC	5 cut(s)	547, 556, 559, 853, 997
PleI	GAGTC	5 cut(s)	187, 208, 739, 808, 1007
PpsI	GAGTC	5 cut(s)	187, 208, 739, 808, 1007
PscI	ACATGT	1 cut(s)	257
Psp124BI	GAGCTC	2 cut(s)	576, 761
PspFI	CCCAGC	1 cut(s)	78
PspN4I	GGNNCC	2 cut(s)	779, 1005
PstNI	CAGNNNCTG	1 cut(s)	554
PsuI	RGATCY	1 cut(s)	777
PteI	GCGCGC	1 cut(s)	82
PvuII	CAGCTG	1 cut(s)	737
RruI	TCGCGA	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	432
SacI	GAGCTC	2 cut(s)	576, 761
SaqAI	TTAA	4 cut(s)	228, 567, 696, 933
SatI	GCNGC	5 cut(s)	546, 555, 558, 852, 996
Sau3AI	GATC	4 cut(s)	393, 721, 777, 819
SchI	GAGTC	5 cut(s)	188, 208, 739, 809, 1007
ScrFI	CCNGG	2 cut(s)	58, 59
SduI	GDGCHC	3 cut(s)	208, 576, 761
SfaNI	GCATC	3 cut(s)	283, 359, 541
SfcI	CTRYAG	1 cut(s)	597
SmaI	CCCGGG	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	4 cut(s)	300, 760, 772, 975
SmoI	CTYRAG	4 cut(s)	300, 760, 772, 975
Sse9I	AATT	6 cut(s)	269, 313, 409, 532, 670, 956
SsiI	CCGC	4 cut(s)	36, 545, 638, 870
SstI	GAGCTC	2 cut(s)	576, 761
StyD4I	CCNGG	2 cut(s)	56, 57
StyI	CCWWGG	2 cut(s)	397, 999
TaaI	ACNGT	2 cut(s)	598, 921
TaiI	ACGT	1 cut(s)	460
TaqI	TCGA	6 cut(s)	158, 244, 286, 537, 748, 822
TaqII	GACCGA	1 cut(s)	714
TasI	AATT	6 cut(s)	269, 313, 409, 532, 670, 956
TauI	GCSGC	1 cut(s)	548
TfiI	GAWTC	4 cut(s)	92, 160, 488, 662
Tru1I	TTAA	4 cut(s)	228, 567, 696, 933
Tru9I	TTAA	4 cut(s)	228, 567, 696, 933
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	4 cut(s)	554, 557, 851, 995
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	5 cut(s)	17, 515, 800, 821, 966
TspMI	CCCGGG	1 cut(s)	57
XapI	RAATTY	2 cut(s)	313, 409
XceI	RCATGY	1 cut(s)	261
XmaI	CCCGGG	1 cut(s)	57
XmnI	GAANNNNTTC	2 cut(s)	506, 828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.