Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004189.1

Orthogroup ID

OG0004058

Physical Location & Seq

Genomic Coordinates Reverse (-)

9864 .. 13921

Gene Structure 4058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004189.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

atgatgaagtggattaagaagattgcggaggagggcacagagagcggacaccggagagcctcgaggcctgtgacggggctctcttctccatcgccgccgcagcagcagcatctatctcaacagctacggcgcagcctcagtaacagcagcagcatcagccagagccagagaatgaagggtctcttcaagtctaagccccgcacgacggccgacgtcgtccgccagacccgcgatctcctcatctatgctcagcgcagccccgattcccgcgagagcaagcgtgaggaaaagatggcagagctttgtaaaaacattagggagttgaagtgcattctctatggcaatagtgagtcagagcctgtttcggaagcttgtgcgcaattgactcaggagtttttcagggaggacactcttcgacttctaatcatgtgtgttccgaagttaaacttggaggccaggaaagatgccactcaagttgttgccaatctacaaaggcaacaggttcactccaagttgattgcatccgattacttggaagcaaacattgatataatggatgttttgatccaagggtacggagatacagatatggctttacattatggtgcaatgctgagagagtgcatacgccaccaaagcgttgcaagatatgttttggaatctcaacacatgaagaagttctttgactatatacagcttccaaatttcgatattgctgcagatgctgctgcaacttttaaggaactcatgacaaggcataaatctacagtagcagattttttatccaagaattatgactggttctttgcggagtataactcaaagctgctggaatcctccaattacattaccagacgacaagctgtcaagctgttaggagatatattgctggatcggtcaaattcagctgtaatgactcgatatgtgagctcaagagacaatttgaggatccttatgaatcttctcagagagtcaagcaagagcatccaaatcgaagcatttcatgtttttaagctatttgctgccaaccaaaataaacctgccgacatcgtgggcatacttgttgcaaatagaagcaagcttctacggctgtttgctgattttaaaattgataaagaggatgaacaatttgaggcagacaaagctcaagtagtaagggagattgctgccttggaaccgaaagaactctcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04150 ko04152 map04150 map04152

Pfam Domains

Protein Families

Mo25

Protein Analysis

397

Amino Acids

45.55

Weight (kDa)

9.09

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03410 AT4G17270 AT5G47540
fragaria_vesca	FvH4_3g00790 FvH4_6g41330
malus_domestica	MD05G1359100.v1.1 MD09G1120500.v1.1 MD10G1334800.v1.1 MD17G1111400.v1.1
prunus_persica	Prupe.3G203000_v2.0.a1 Prupe.4G008800_v2.0.a1
pyrus_communis	pycom05g32450 pycom10g28460
rosa_chinensis	RchiOBHm_Chr2g0156881 RchiOBHm_Chr5g0001041
rosa_laevigata	RLG00000020949 RLG00000030916
rosa_multiflora	Rmu_sc0000255.1_g000032 Rmu_sc0004189.1_g000003 Rmu_sc0011756.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075250 Rroxscaffold_2G00092630
rosa_rugosa	Rorug02G0456900 Rorug04G0389200
rosa_samantha	Rh2AG522500 Rh2BG535800 Rh2CG507400 Rh2DG544800 Rh5AG008400 Rh5CG009100 Rh5DG009300
rosa_wichuraiana	Rw2G043150 Rw5G000860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	216
AbsI	CCTCGAGG	1 cut(s)	61
Acc16I	TGCGCA	1 cut(s)	378
Acc36I	ACCTGC	1 cut(s)	1048
AccBSI	CCGCTC	1 cut(s)	45
AccII	CGCG	2 cut(s)	231, 270
AciI	CCGC	9 cut(s)	26, 45, 95, 98, 199, 220, 229, 268, 809
AclWI	GGATC	4 cut(s)	559, 900, 943, 956
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	2 cut(s)	703, 901
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	1 cut(s)	575
AfiI	CCNNNNNNNGG	2 cut(s)	74, 205
AgsI	TTSAA	2 cut(s)	187, 325
AhdI	GACNNNNNGTC	1 cut(s)	863
AjnI	CCWGG	1 cut(s)	455
AjuI	GAANNNNNNNTTGG	2 cut(s)	431, 463
Alw21I	GWGCWC	1 cut(s)	932
Alw26I	GTCTC	2 cut(s)	185, 930
AlwI	GGATC	4 cut(s)	559, 900, 943, 956
AlwNI	CAGNNNCTG	2 cut(s)	359, 725
Ama87I	CYCGRG	1 cut(s)	61
AoxI	GGCC	3 cut(s)	65, 207, 453
ApoI	RAATTY	2 cut(s)	703, 901
ArsI	GACNNNNNNTTYG	2 cut(s)	788, 820
Asp700I	GAANNNNTTC	2 cut(s)	677, 999
AspLEI	GCGC	3 cut(s)	132, 255, 379
AvaI	CYCGRG	1 cut(s)	61
BaeGI	GKGCMC	1 cut(s)	38
BamHI	GGATCC	1 cut(s)	948
BanII	GRGCYC	2 cut(s)	81, 932
Bbv12I	GWGCWC	1 cut(s)	932
BccI	CCATC	2 cut(s)	97, 286
BceAI	ACGGC	3 cut(s)	143, 222, 1103
BcgI	CGANNNNNNTGC	4 cut(s)	698, 732, 973, 1007
BciT130I	CCWGG	1 cut(s)	457
BcoDI	GTCTC	2 cut(s)	185, 930
BfmI	CTRYAG	2 cut(s)	717, 765
BfuAI	ACCTGC	1 cut(s)	1048
BlpI	GCTNAGC	1 cut(s)	249
Bme1390I	CCNGG	1 cut(s)	457
BmeRI	GACNNNNNGTC	1 cut(s)	863
BmeT110I	CYCGRG	1 cut(s)	61
BmiI	GGNNCC	2 cut(s)	950, 1176
BmrFI	CCNGG	1 cut(s)	457
BmsI	GCATC	6 cut(s)	118, 162, 454, 530, 712, 993
BplI	GAGNNNNNCTC	2 cut(s)	803, 835
Bpu1102I	GCTNAGC	1 cut(s)	249
BpuEI	CTTGAG	3 cut(s)	456, 916, 1131
BsaHI	GRCGYC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	568, 1170
BsaWI	WCCGGW	1 cut(s)	51
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 205
Bse1I	ACTGG	1 cut(s)	803
Bse3DI	GCAATG	1 cut(s)	615
BseBI	CCWGG	1 cut(s)	457
BseDI	CCNNGG	2 cut(s)	568, 1170
BseGI	GGATG	4 cut(s)	521, 562, 984, 1126
BseLI	CCNNNNNNNGG	2 cut(s)	74, 205
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	5 cut(s)	151, 263, 401, 605, 979
BseNI	ACTGG	1 cut(s)	803
BseRI	GAGGAG	2 cut(s)	44, 227
BseSI	GKGCMC	1 cut(s)	38
BseX3I	CGGCCG	1 cut(s)	207
Bsh1236I	CGCG	2 cut(s)	231, 270
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	3 cut(s)	67, 209, 455
BsiEI	CGRYCG	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	932
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	74, 205
BsmAI	GTCTC	2 cut(s)	185, 930
BsmI	GAATGC	1 cut(s)	330
BsnI	GGCC	3 cut(s)	67, 209, 455
Bso31I	GGTCTC	1 cut(s)	185
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	3 cut(s)	38, 81, 932
Bsp143I	GATC	4 cut(s)	232, 564, 892, 948
Bsp1720I	GCTNAGC	1 cut(s)	249
BspACI	CCGC	9 cut(s)	26, 45, 95, 98, 199, 220, 229, 268, 809
BspANI	GGCC	3 cut(s)	67, 209, 455
BspCNI	CTCAG	5 cut(s)	150, 262, 400, 606, 978
BspFNI	CGCG	2 cut(s)	231, 270
BspHI	TCATGA	2 cut(s)	747, 1190
BspLI	GGNNCC	2 cut(s)	950, 1176
BspMAI	CTGCAG	1 cut(s)	721
BspMI	ACCTGC	1 cut(s)	1048
BspPI	GGATC	4 cut(s)	559, 900, 943, 956
BspTNI	GGTCTC	1 cut(s)	185
BsrBI	CCGCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	615
BsrI	ACTGG	1 cut(s)	803
BssECI	CCNNGG	2 cut(s)	568, 1170
BssMI	GATC	4 cut(s)	232, 564, 892, 948
BssNI	GRCGYC	1 cut(s)	213
BssT1I	CCWWGG	2 cut(s)	568, 1170
Bst2UI	CCWGG	1 cut(s)	457
Bst4CI	ACNGT	1 cut(s)	769
Bst6I	CTCTTC	3 cut(s)	88, 188, 417
BstACI	GRCGYC	1 cut(s)	213
BstAPI	GCANNNNNTGC	1 cut(s)	725
BstC8I	GCNNGC	2 cut(s)	278, 1079
BstDEI	CTNAG	6 cut(s)	137, 192, 249, 387, 614, 965
BstF5I	GGATG	4 cut(s)	521, 562, 984, 1126
BstFNI	CGCG	2 cut(s)	231, 270
BstHHI	GCGC	3 cut(s)	132, 255, 379
BstKTI	GATC	4 cut(s)	235, 567, 895, 951
BstMAI	GTCTC	2 cut(s)	185, 930
BstMBI	GATC	4 cut(s)	232, 564, 892, 948
BstMCI	CGRYCG	1 cut(s)	210
BstNI	CCWGG	1 cut(s)	457
BstSCI	CCNGG	1 cut(s)	455
BstSFI	CTRYAG	2 cut(s)	717, 765
BstSLI	GKGCMC	1 cut(s)	38
BstUI	CGCG	2 cut(s)	231, 270
BstX2I	RGATCY	1 cut(s)	948
BstYI	RGATCY	1 cut(s)	948
BstZI	CGGCCG	1 cut(s)	207
BsuRI	GGCC	3 cut(s)	67, 209, 455
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	4 cut(s)	521, 562, 984, 1126
BveI	ACCTGC	1 cut(s)	1048
Cac8I	GCNNGC	2 cut(s)	278, 1079
CaiI	CAGNNNCTG	2 cut(s)	359, 725
CciI	TCATGA	2 cut(s)	747, 1190
CfoI	GCGC	3 cut(s)	132, 255, 379
Csp6I	GTAC	1 cut(s)	574
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	5 cut(s)	427, 670, 748, 1004, 1191
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	6 cut(s)	137, 192, 249, 387, 614, 965
DpnI	GATC	4 cut(s)	234, 566, 894, 950
DpnII	GATC	4 cut(s)	232, 564, 892, 948
DraI	TTTAAA	1 cut(s)	1105
DriI	GACNNNNNGTC	1 cut(s)	863
EaeI	YGGCCR	1 cut(s)	207
EagI	CGGCCG	1 cut(s)	207
Eam1104I	CTCTTC	3 cut(s)	88, 188, 417
Eam1105I	GACNNNNNGTC	1 cut(s)	863
EarI	CTCTTC	3 cut(s)	88, 188, 417
EciI	GGCGGA	1 cut(s)	209
Ecl136II	GAGCTC	1 cut(s)	930
EclXI	CGGCCG	1 cut(s)	207
Eco130I	CCWWGG	2 cut(s)	568, 1170
Eco147I	AGGCCT	1 cut(s)	67
Eco24I	GRGCYC	2 cut(s)	81, 932
Eco31I	GGTCTC	1 cut(s)	185
Eco52I	CGGCCG	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	930
Eco88I	CYCGRG	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	930
EcoRII	CCWGG	1 cut(s)	455
EcoT14I	CCWWGG	2 cut(s)	568, 1170
EcoT38I	GRGCYC	2 cut(s)	81, 932
ErhI	CCWWGG	2 cut(s)	568, 1170
FaeI	CATG	5 cut(s)	430, 673, 751, 1007, 1194
FalI	AAGNNNNNCTT	6 cut(s)	167, 199, 431, 463, 665, 697
FatI	CATG	5 cut(s)	426, 669, 747, 1003, 1190
FauI	CCCGC	3 cut(s)	206, 236, 275
FokI	GGATG	4 cut(s)	508, 569, 971, 1133
FriOI	GRGCYC	2 cut(s)	81, 932
FspI	TGCGCA	1 cut(s)	378
GlaI	GCGC	3 cut(s)	131, 254, 378
HaeIII	GGCC	3 cut(s)	67, 209, 455
HapII	CCGG	1 cut(s)	52
HhaI	GCGC	3 cut(s)	132, 255, 379
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	5 cut(s)	430, 673, 751, 1007, 1194
Hin6I	GCGC	3 cut(s)	130, 253, 377
HinP1I	GCGC	3 cut(s)	130, 253, 377
HindIII	AAGCTT	2 cut(s)	369, 1079
HinfI	GANTC	8 cut(s)	263, 350, 385, 659, 833, 916, 958, 971
HpaII	CCGG	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	5 cut(s)	355, 367, 438, 526, 968
Hpy188III	TCNNGA	4 cut(s)	389, 748, 933, 1191
Hpy8I	GTNNAC	1 cut(s)	505
Hpy99I	CGWCG	3 cut(s)	208, 215, 218
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	769
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	8 cut(s)	330, 521, 608, 624, 644, 719, 731, 1067
HpyF3I	CTNAG	6 cut(s)	137, 192, 249, 387, 614, 965
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	5 cut(s)	430, 673, 751, 1007, 1194
HspAI	GCGC	3 cut(s)	130, 253, 377
Kzo9I	GATC	4 cut(s)	232, 564, 892, 948
LweI	GCATC	6 cut(s)	118, 162, 454, 530, 712, 993
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	70, 140
MalI	GATC	4 cut(s)	234, 566, 894, 950
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	4 cut(s)	232, 564, 892, 948
MboII	GAAGA	6 cut(s)	31, 75, 175, 404, 685, 953
MfeI	CAATTG	1 cut(s)	380
MflI	RGATCY	1 cut(s)	948
MhlI	GDGCHC	3 cut(s)	38, 81, 932
MluCI	AATT	8 cut(s)	380, 703, 790, 841, 901, 940, 1107, 1127
MlyI	GAGTC	4 cut(s)	359, 379, 910, 980
MroXI	GAANNNNTTC	2 cut(s)	677, 999
MseI	TTAA	5 cut(s)	15, 443, 738, 1011, 1104
MslI	CAYNNNNRTG	1 cut(s)	603
MspA1I	CMGCKG	1 cut(s)	908
MspI	CCGG	1 cut(s)	52
MspR9I	CCNGG	1 cut(s)	457
MunI	CAATTG	1 cut(s)	380
Mva1269I	GAATGC	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	457
MvnI	CGCG	2 cut(s)	231, 270
NdeII	GATC	4 cut(s)	232, 564, 892, 948
NlaIII	CATG	5 cut(s)	430, 673, 751, 1007, 1194
NlaIV	GGNNCC	2 cut(s)	950, 1176
NmuCI	GTSAC	1 cut(s)	70
NsbI	TGCGCA	1 cut(s)	378
PaeR7I	CTCGAG	1 cut(s)	61
PagI	TCATGA	2 cut(s)	747, 1190
PceI	AGGCCT	1 cut(s)	67
PctI	GAATGC	1 cut(s)	330
PdmI	GAANNNNTTC	2 cut(s)	677, 999
PfeI	GAWTC	4 cut(s)	263, 659, 833, 958
PflFI	GACNNNGTC	1 cut(s)	215
PleI	GAGTC	4 cut(s)	358, 379, 910, 979
PpsI	GAGTC	4 cut(s)	358, 379, 910, 979
Psp124BI	GAGCTC	1 cut(s)	932
Psp6I	CCWGG	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	455
PspN4I	GGNNCC	2 cut(s)	950, 1176
PspXI	VCTCGAGB	1 cut(s)	61
PstI	CTGCAG	1 cut(s)	721
PstNI	CAGNNNCTG	2 cut(s)	359, 725
PsuI	RGATCY	1 cut(s)	948
PsyI	GACNNNGTC	1 cut(s)	215
PvuII	CAGCTG	1 cut(s)	908
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
RseI	CAYNNNNRTG	1 cut(s)	603
SacI	GAGCTC	1 cut(s)	932
SaqAI	TTAA	5 cut(s)	15, 443, 738, 1011, 1104
Sau3AI	GATC	4 cut(s)	232, 564, 892, 948
SchI	GAGTC	4 cut(s)	359, 379, 910, 980
ScrFI	CCNGG	1 cut(s)	457
SduI	GDGCHC	3 cut(s)	38, 81, 932
SfaNI	GCATC	6 cut(s)	118, 162, 454, 530, 712, 993
SfcI	CTRYAG	2 cut(s)	717, 765
Sfr274I	CTCGAG	1 cut(s)	61
SlaI	CTCGAG	1 cut(s)	61
SmiMI	CAYNNNNRTG	1 cut(s)	603
SmlI	CTYRAG	4 cut(s)	61, 471, 931, 1146
SmoI	CTYRAG	4 cut(s)	61, 471, 931, 1146
Sse9I	AATT	8 cut(s)	380, 703, 790, 841, 901, 940, 1107, 1127
SseBI	AGGCCT	1 cut(s)	67
SsiI	CCGC	9 cut(s)	26, 45, 95, 98, 199, 220, 229, 268, 809
SstI	GAGCTC	1 cut(s)	932
StuI	AGGCCT	1 cut(s)	67
StyD4I	CCNGG	1 cut(s)	455
StyI	CCWWGG	2 cut(s)	568, 1170
TaaI	ACNGT	1 cut(s)	769
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	5 cut(s)	62, 415, 708, 919, 993
TaqII	GACCGA	1 cut(s)	885
TasI	AATT	8 cut(s)	380, 703, 790, 841, 901, 940, 1107, 1127
TauI	GCSGC	2 cut(s)	97, 100
TfiI	GAWTC	4 cut(s)	263, 659, 833, 958
Tru1I	TTAA	5 cut(s)	15, 443, 738, 1011, 1104
Tru9I	TTAA	5 cut(s)	15, 443, 738, 1011, 1104
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	6 cut(s)	20, 188, 686, 971, 992, 1137
TspGWI	ACGGA	1 cut(s)	591
Tth111I	GACNNNGTC	1 cut(s)	215
XapI	RAATTY	2 cut(s)	703, 901
XhoI	CTCGAG	1 cut(s)	61
XmnI	GAANNNNTTC	2 cut(s)	677, 999
ZraI	GACGTC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.