Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004058

Physical Location & Seq

Genomic Coordinates Reverse (-)

447564 .. 451925

Gene Structure 4362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G008800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGAAGGGACTCTTCAAATCCAAGCCCCGAACCCCCGCCGACGTTGTTCGCCAGACCCGCGATCTCCTCATCTATGCCCAGCGCACCCCCGATTCCCGCGAAAGCAAACGCGAGGAGAAGATGTCAGAGCTATGTAAAAACATCAGGGAGATGAAGTCCATTCTCTACGGCAATAGTGAGTCCGAGCCTGTCTCAGAAGCTTGTGCTCAATTGACCCAGGAGTTTTTTAAAGAGAACACGCTTCGACTTCTCATTATGTGTCTTCCCAAATTGAACTTGGAGGCTCGAAAAGATGCCACTCAAGTTGTTGCAAATTTGCAAAGACAACAAGTTCAATCCAAGTTGATTGCATCTGATTATTTGGAAGCAAACATAGATTTGATGGATATTTTAATCCAAGGGTATGGAAACACAGACATGGCTCTACATTATGGTGCAATGCTGAGGGAGTGCATACGCCACCAAACCGTTGCAAGATATGTTTTGGAATCAGAACACATGAAGAAGTTCTTTGATTATATACAGCTTCCCAATTTTGATATTGCTGCAGATGCTGCTGCAACTTTTAAGGAACTCCTGACGAGGCATAAATCTACTGTAGCGGAATTTCTTTCCAAGAACTATGACTGGTTTTTTGCGGAGTATAACTCAAAGCTTCTAGAATCCTCCAATTACATTACCAGACGGCAAGCTGTCAAGTTGTTGGGAGATATTTTGTTGGATCGGTCAAACTCAGCTGTGATGACTCGATATGTGAGCTCAAGGGACAACCTGAGGATCCTTATGAATCTTCTCAGAGAGTCAAGCAAGAGCATCCAGATTGAAGCATTTCATGTTTTCAAGCTATTTGCTGCTAATCAAAATAAACCTGCCGACATCATGAGCATACTTGTCGCAAATAGAAGCAAGCTTCTACGGCTGTTTGCTGATTTTAAGATTGATAAAGAGGATGAACAATTTGAGGCAGACAAAGCTCAAGTAGTGAGAGAAATTGCTGCCTTGGAACCTAAAGACCACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04150 ko04152 map04150 map04152

Pfam Domains

Protein Families

Mo25

Protein Analysis

341

Amino Acids

39.28

Weight (kDa)

8.49

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03410 AT4G17270 AT5G47540
fragaria_vesca	FvH4_3g00790 FvH4_6g41330
malus_domestica	MD05G1359100.v1.1 MD09G1120500.v1.1 MD10G1334800.v1.1 MD17G1111400.v1.1
prunus_persica	Prupe.3G203000_v2.0.a1 Prupe.4G008800_v2.0.a1
pyrus_communis	pycom05g32450 pycom10g28460
rosa_chinensis	RchiOBHm_Chr2g0156881 RchiOBHm_Chr5g0001041
rosa_laevigata	RLG00000020949 RLG00000030916
rosa_multiflora	Rmu_sc0000255.1_g000032 Rmu_sc0004189.1_g000003 Rmu_sc0011756.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075250 Rroxscaffold_2G00092630
rosa_rugosa	Rorug02G0456900 Rorug04G0389200
rosa_samantha	Rh2AG522500 Rh2BG535800 Rh2CG507400 Rh2DG544800 Rh5AG008400 Rh5CG009100 Rh5DG009300
rosa_wichuraiana	Rw2G043150 Rw5G000860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	877
AccII	CGCG	3 cut(s)	60, 99, 111
AciI	CCGC	5 cut(s)	36, 58, 97, 602, 638
AclWI	GGATC	3 cut(s)	729, 772, 785
AcsI	RAATTY	2 cut(s)	313, 605
AgsI	TTSAA	5 cut(s)	16, 274, 335, 824, 841
AjnI	CCWGG	1 cut(s)	216
Alw21I	GWGCWC	2 cut(s)	208, 761
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	3 cut(s)	729, 772, 785
AlwNI	CAGNNNCTG	1 cut(s)	554
ApeKI	GCWGC	5 cut(s)	545, 554, 557, 851, 995
ApoI	RAATTY	2 cut(s)	313, 605
ArsI	GACNNNNNNTTYG	2 cut(s)	617, 649
Asp700I	GAANNNNTTC	2 cut(s)	506, 828
AspLEI	GCGC	1 cut(s)	84
AxyI	CCTNAGG	1 cut(s)	773
BamHI	GGATCC	1 cut(s)	777
BanII	GRGCYC	1 cut(s)	761
BbsI	GAAGAC	1 cut(s)	254
Bbv12I	GWGCWC	2 cut(s)	208, 761
BbvCI	CCTCAGC	1 cut(s)	443
BbvI	GCAGC	5 cut(s)	532, 541, 544, 838, 982
BccI	CCATC	1 cut(s)	376
BceAI	ACGGC	3 cut(s)	184, 701, 932
BcgI	CGANNNNNNTGC	2 cut(s)	874, 908
BciT130I	CCWGG	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	1 cut(s)	659
BfmI	CTRYAG	2 cut(s)	546, 597
BfuAI	ACCTGC	1 cut(s)	877
BisI	GCNGC	5 cut(s)	546, 555, 558, 852, 996
BlsI	GCNGC	5 cut(s)	547, 556, 559, 853, 997
Bme1390I	CCNGG	1 cut(s)	218
BmiI	GGNNCC	2 cut(s)	779, 1005
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	4 cut(s)	283, 359, 541, 822
BpiI	GAAGAC	1 cut(s)	254
BplI	GAGNNNNNCTC	4 cut(s)	176, 208, 632, 664
Bpu10I	CCTNAGC	1 cut(s)	443
BpuEI	CTTGAG	3 cut(s)	285, 745, 960
BsaJI	CCNNGG	3 cut(s)	216, 397, 999
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 140, 170
Bse1I	ACTGG	1 cut(s)	632
Bse21I	CCTNAGG	1 cut(s)	773
Bse3DI	GCAATG	1 cut(s)	444
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	3 cut(s)	216, 397, 999
BseGI	GGATG	2 cut(s)	813, 955
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	5 cut(s)	207, 434, 747, 764, 808
BseNI	ACTGG	1 cut(s)	632
BseRI	GAGGAG	2 cut(s)	56, 128
BseXI	GCAGC	5 cut(s)	532, 541, 544, 838, 982
BseYI	CCCAGC	1 cut(s)	78
Bsh1236I	CGCG	3 cut(s)	60, 99, 111
BsiHKAI	GWGCWC	2 cut(s)	208, 761
BslFI	GGGAC	2 cut(s)	21, 779
BsmAI	GTCTC	1 cut(s)	196
BsmFI	GGGAC	2 cut(s)	21, 779
Bsp1286I	GDGCHC	2 cut(s)	208, 761
Bsp143I	GATC	3 cut(s)	61, 721, 777
BspACI	CCGC	5 cut(s)	36, 58, 97, 602, 638
BspCNI	CTCAG	5 cut(s)	206, 435, 746, 765, 807
BspFNI	CGCG	3 cut(s)	60, 99, 111
BspHI	TCATGA	2 cut(s)	879, 1019
BspLI	GGNNCC	2 cut(s)	779, 1005
BspMAI	CTGCAG	1 cut(s)	550
BspMI	ACCTGC	1 cut(s)	877
BspPI	GGATC	3 cut(s)	729, 772, 785
BsrDI	GCAATG	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	632
BssECI	CCNNGG	3 cut(s)	216, 397, 999
BssMI	GATC	3 cut(s)	61, 721, 777
BssT1I	CCWWGG	2 cut(s)	397, 999
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	2 cut(s)	469, 598
Bst6I	CTCTTC	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstC8I	GCNNGC	2 cut(s)	690, 908
BstDEI	CTNAG	5 cut(s)	193, 443, 733, 773, 794
BstF5I	GGATG	2 cut(s)	813, 955
BstFNI	CGCG	3 cut(s)	60, 99, 111
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	3 cut(s)	64, 724, 780
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	3 cut(s)	61, 721, 777
BstMWI	GCNNNNNNNGC	5 cut(s)	57, 551, 554, 916, 971
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	216
BstSFI	CTRYAG	2 cut(s)	546, 597
BstUI	CGCG	3 cut(s)	60, 99, 111
BstV1I	GCAGC	5 cut(s)	532, 541, 544, 838, 982
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	1 cut(s)	777
BstXI	CCANNNNNNTGG	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	777
Bsu36I	CCTNAGG	1 cut(s)	773
BtsCI	GGATG	2 cut(s)	813, 955
BveI	ACCTGC	1 cut(s)	877
Cac8I	GCNNGC	2 cut(s)	690, 908
CaiI	CAGNNNCTG	1 cut(s)	554
CciI	TCATGA	2 cut(s)	879, 1019
CfoI	GCGC	1 cut(s)	84
CspCI	CAANNNNNGTGG	2 cut(s)	286, 321
CviAII	CATG	5 cut(s)	418, 499, 833, 880, 1020
DdeI	CTNAG	5 cut(s)	193, 443, 733, 773, 794
DpnI	GATC	3 cut(s)	63, 723, 779
DpnII	GATC	3 cut(s)	61, 721, 777
DraI	TTTAAA	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Ecl136II	GAGCTC	1 cut(s)	759
Eco130I	CCWWGG	2 cut(s)	397, 999
Eco24I	GRGCYC	1 cut(s)	761
Eco53kI	GAGCTC	1 cut(s)	759
Eco81I	CCTNAGG	1 cut(s)	773
EcoICRI	GAGCTC	1 cut(s)	759
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	2 cut(s)	397, 999
EcoT38I	GRGCYC	1 cut(s)	761
ErhI	CCWWGG	2 cut(s)	397, 999
FaeI	CATG	5 cut(s)	421, 502, 836, 883, 1023
FalI	AAGNNNNNCTT	3 cut(s)	28, 494, 526
FaqI	GGGAC	2 cut(s)	21, 779
FatI	CATG	5 cut(s)	417, 498, 832, 879, 1019
FauI	CCCGC	3 cut(s)	43, 65, 104
Fnu4HI	GCNGC	5 cut(s)	546, 555, 558, 852, 996
FokI	GGATG	2 cut(s)	800, 962
FriOI	GRGCYC	1 cut(s)	761
Fsp4HI	GCNGC	5 cut(s)	546, 555, 558, 852, 996
FspBI	CTAG	1 cut(s)	659
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	5 cut(s)	546, 555, 558, 852, 996
GsaI	CCCAGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	5 cut(s)	421, 502, 836, 883, 1023
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HindIII	AAGCTT	3 cut(s)	198, 653, 908
HinfI	GANTC	8 cut(s)	9, 92, 179, 488, 662, 745, 787, 800
Hpy188I	TCNGA	6 cut(s)	127, 184, 196, 355, 493, 797
Hpy188III	TCNNGA	5 cut(s)	577, 659, 817, 880, 1020
Hpy99I	CGWCG	1 cut(s)	44
HpyCH4III	ACNGT	2 cut(s)	469, 598
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	8 cut(s)	311, 319, 350, 437, 453, 473, 548, 560
HpyF10VI	GCNNNNNNNGC	5 cut(s)	57, 551, 554, 916, 971
HpyF3I	CTNAG	5 cut(s)	193, 443, 733, 773, 794
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	5 cut(s)	421, 502, 836, 883, 1023
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	61, 721, 777
Lsp1109I	GCAGC	5 cut(s)	532, 541, 544, 838, 982
LweI	GCATC	4 cut(s)	283, 359, 541, 822
MaeI	CTAG	1 cut(s)	659
MaeII	ACGT	1 cut(s)	42
MalI	GATC	3 cut(s)	63, 723, 779
MboI	GATC	3 cut(s)	61, 721, 777
MboII	GAAGA	5 cut(s)	4, 130, 254, 514, 782
MfeI	CAATTG	1 cut(s)	209
MflI	RGATCY	1 cut(s)	777
MhlI	GDGCHC	2 cut(s)	208, 761
MluCI	AATT	8 cut(s)	209, 269, 313, 532, 605, 670, 956, 990
MlyI	GAGTC	4 cut(s)	3, 188, 739, 809
MmeI	TCCRAC	1 cut(s)	699
MnlI	CCTC	9 cut(s)	77, 106, 274, 438, 576, 676, 768, 940, 955
MroXI	GAANNNNTTC	2 cut(s)	506, 828
MseI	TTAA	4 cut(s)	228, 392, 567, 933
MslI	CAYNNNNRTG	2 cut(s)	416, 432
MspA1I	CMGCKG	1 cut(s)	737
MspR9I	CCNGG	1 cut(s)	218
MunI	CAATTG	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	218
MvnI	CGCG	3 cut(s)	60, 99, 111
MwoI	GCNNNNNNNGC	5 cut(s)	57, 551, 554, 916, 971
NdeII	GATC	3 cut(s)	61, 721, 777
NlaIII	CATG	5 cut(s)	421, 502, 836, 883, 1023
NlaIV	GGNNCC	2 cut(s)	779, 1005
PagI	TCATGA	2 cut(s)	879, 1019
PdmI	GAANNNNTTC	2 cut(s)	506, 828
PfeI	GAWTC	4 cut(s)	92, 488, 662, 787
PkrI	GCNGC	5 cut(s)	547, 556, 559, 853, 997
PleI	GAGTC	4 cut(s)	3, 187, 739, 808
PpsI	GAGTC	4 cut(s)	3, 187, 739, 808
Psp124BI	GAGCTC	1 cut(s)	761
Psp6I	CCWGG	1 cut(s)	216
PspFI	CCCAGC	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	2 cut(s)	779, 1005
PstI	CTGCAG	1 cut(s)	550
PstNI	CAGNNNCTG	1 cut(s)	554
PsuI	RGATCY	1 cut(s)	777
PvuII	CAGCTG	1 cut(s)	737
RseI	CAYNNNNRTG	2 cut(s)	416, 432
SacI	GAGCTC	1 cut(s)	761
SaqAI	TTAA	4 cut(s)	228, 392, 567, 933
SatI	GCNGC	5 cut(s)	546, 555, 558, 852, 996
Sau3AI	GATC	3 cut(s)	61, 721, 777
SchI	GAGTC	4 cut(s)	3, 188, 739, 809
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	2 cut(s)	208, 761
SfaNI	GCATC	4 cut(s)	283, 359, 541, 822
SfcI	CTRYAG	2 cut(s)	546, 597
SmiMI	CAYNNNNRTG	2 cut(s)	416, 432
SmlI	CTYRAG	3 cut(s)	300, 760, 975
SmoI	CTYRAG	3 cut(s)	300, 760, 975
Sse9I	AATT	8 cut(s)	209, 269, 313, 532, 605, 670, 956, 990
SsiI	CCGC	5 cut(s)	36, 58, 97, 602, 638
SspMI	CTAG	1 cut(s)	659
SstI	GAGCTC	1 cut(s)	761
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	2 cut(s)	397, 999
TaaI	ACNGT	2 cut(s)	469, 598
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	3 cut(s)	244, 286, 748
TaqII	GACCGA	1 cut(s)	714
TasI	AATT	8 cut(s)	209, 269, 313, 532, 605, 670, 956, 990
TfiI	GAWTC	4 cut(s)	92, 488, 662, 787
Tru1I	TTAA	4 cut(s)	228, 392, 567, 933
Tru9I	TTAA	4 cut(s)	228, 392, 567, 933
TseI	GCWGC	5 cut(s)	545, 554, 557, 851, 995
TspDTI	ATGAA	6 cut(s)	17, 167, 515, 800, 821, 966
XapI	RAATTY	2 cut(s)	313, 605
XbaI	TCTAGA	1 cut(s)	658
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XmnI	GAANNNNTTC	2 cut(s)	506, 828
XspI	CTAG	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.