Rroxscaffold_1G00075250

MO25-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004058
Physical Location & Seq
Forward (+)
96055392 .. 96062840
7449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00075250.1

Sequence Viewer

Length: 756 bp
ATGAAGGGTCTGTTCAAGTCTAAGCCCCGCACGCCGGCCGATGTCGTCCGCCAGACCCGCGATCTCCTCATCTATGCCCAGCGCAGCCCCGATTCCCGCGAGAGCAAGCGCGAGGAAAAGGCAAGGAAAGATGCCACTCAAGTTGTAGCCAATCTACAAAGGCAACAGGTTCACTCCAAGTTGATTGCATCCGATTACTTGGAAGCAAACATTGATATAATGGATGTTTTGATCCAAGGGTACGGAGATACAGATATGGCTTTACATTATGGTGCAATGCTGAGAGAGTGCATACGCCACCAAAGCGTTGCAAGATATGTTTTGGAATCTCAACACATGAAGAAGTTCTTTGACTATATACAGCTTCCAAATTTTGATATTGCTGCAGATGCTGCTGCGACTTTTAAGTTCTTTGCGGAGTATAACTCAAAGCTGCTGGAATCCTCCAATTACATTACCAGACGACAAGCTGTCAAGCTGTTAGGAGATATATTGCTGGATCGGTCAAATTCAGCTGTAATGACTCGATATGTGAGCTCAAGAGACAATTTGAGGATCCTTATGAATCTTCTCAGACTATTTGCTGCCAACCAAAATAAACCTGCCGATATCGTGGGCATACTTGTTGCAAATAGAAGCAAACTTCTACGGCTGTTTGCTGATTTTAAAATTGATAAAGAGGATGAACAATTTGAGGCAGACAAAGCTCAAGTAGTAAGAGAGATTGCTGCCTTGGAACCAAAAGAACTCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04150 ko04152 map04150 map04152
Pfam Domains
Protein Families
Mo25

Protein Analysis

251

Amino Acids

28.81

Weight (kDa)

9.16

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mo25 PF08569 40 - 246 8.3e-66 Mo25-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 610
AccII CGCG 3 cut(s) 60, 99, 111
AciI CCGC 5 cut(s) 28, 49, 58, 97, 416
AclWI GGATC 4 cut(s) 226, 507, 550, 563
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 2 cut(s) 370, 508
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 1 cut(s) 16
AhdI GACNNNNNGTC 1 cut(s) 470
AluBI AGCT 7 cut(s) 364, 433, 470, 478, 515, 537, 707
AluI AGCT 7 cut(s) 364, 433, 470, 478, 515, 537, 707
Alw21I GWGCWC 1 cut(s) 539
Alw26I GTCTC 1 cut(s) 537
AlwI GGATC 4 cut(s) 226, 507, 550, 563
AlwNI CAGNNNCTG 1 cut(s) 392
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 7 cut(s) 84, 383, 392, 395, 433, 584, 728
ApoI RAATTY 2 cut(s) 370, 508
Asp700I GAANNNNTTC 1 cut(s) 344
AspLEI GCGC 2 cut(s) 84, 111
BamHI GGATCC 1 cut(s) 555
BanII GRGCYC 1 cut(s) 539
Bbv12I GWGCWC 1 cut(s) 539
BbvI GCAGC 7 cut(s) 96, 370, 379, 382, 420, 571, 715
BceAI ACGGC 1 cut(s) 665
BcoDI GTCTC 1 cut(s) 537
BfmI CTRYAG 1 cut(s) 384
BfuAI ACCTGC 1 cut(s) 610
BisI GCNGC 7 cut(s) 85, 384, 393, 396, 434, 585, 729
BlsI GCNGC 7 cut(s) 86, 385, 394, 397, 435, 586, 730
BmeRI GACNNNNNGTC 1 cut(s) 470
BmiI GGNNCC 2 cut(s) 557, 738
BmsI GCATC 3 cut(s) 121, 197, 379
BplI GAGNNNNNCTC 2 cut(s) 410, 442
BpuEI CTTGAG 3 cut(s) 123, 523, 693
BsaJI CCNNGG 2 cut(s) 235, 732
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 235, 732
BseGI GGATG 3 cut(s) 188, 229, 688
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 2 cut(s) 272, 586
BseRI GAGGAG 1 cut(s) 56
BseX3I CGGCCG 1 cut(s) 36
BseXI GCAGC 7 cut(s) 96, 370, 379, 382, 420, 571, 715
BseYI CCCAGC 1 cut(s) 78
Bsh1236I CGCG 3 cut(s) 60, 99, 111
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 1 cut(s) 38
BsiEI CGRYCG 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 539
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 537
BsnI GGCC 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 539
Bsp143I GATC 4 cut(s) 61, 231, 499, 555
BspACI CCGC 5 cut(s) 28, 49, 58, 97, 416
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 2 cut(s) 273, 585
BspFNI CGCG 3 cut(s) 60, 99, 111
BspHI TCATGA 1 cut(s) 752
BspLI GGNNCC 2 cut(s) 557, 738
BspMAI CTGCAG 1 cut(s) 388
BspMI ACCTGC 1 cut(s) 610
BspPI GGATC 4 cut(s) 226, 507, 550, 563
BsrDI GCAATG 1 cut(s) 282
BsrFI RCCGGY 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 235, 732
BssMI GATC 4 cut(s) 61, 231, 499, 555
BssT1I CCWWGG 2 cut(s) 235, 732
BstAPI GCANNNNNTGC 1 cut(s) 392
BstC8I GCNNGC 3 cut(s) 32, 36, 107
BstDEI CTNAG 3 cut(s) 21, 281, 572
BstF5I GGATG 3 cut(s) 188, 229, 688
BstFNI CGCG 3 cut(s) 60, 99, 111
BstHHI GCGC 2 cut(s) 84, 111
BstKTI GATC 4 cut(s) 64, 234, 502, 558
BstMAI GTCTC 1 cut(s) 537
BstMBI GATC 4 cut(s) 61, 231, 499, 555
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 6 cut(s) 31, 57, 303, 389, 392, 704
BstSFI CTRYAG 1 cut(s) 384
BstUI CGCG 3 cut(s) 60, 99, 111
BstV1I GCAGC 7 cut(s) 96, 370, 379, 382, 420, 571, 715
BstX2I RGATCY 1 cut(s) 555
BstYI RGATCY 1 cut(s) 555
BstZI CGGCCG 1 cut(s) 36
BsuRI GGCC 1 cut(s) 38
BtsCI GGATG 3 cut(s) 188, 229, 688
BveI ACCTGC 1 cut(s) 610
Cac8I GCNNGC 3 cut(s) 32, 36, 107
CaiI CAGNNNCTG 1 cut(s) 392
CciI TCATGA 1 cut(s) 752
CfoI GCGC 2 cut(s) 84, 111
Cfr10I RCCGGY 1 cut(s) 34
Csp6I GTAC 1 cut(s) 241
CspCI CAANNNNNGTGG 2 cut(s) 124, 159
CviAII CATG 2 cut(s) 337, 753
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 3 cut(s) 21, 281, 572
DpnI GATC 4 cut(s) 63, 233, 501, 557
DpnII GATC 4 cut(s) 61, 231, 499, 555
DraI TTTAAA 1 cut(s) 667
DriI GACNNNNNGTC 1 cut(s) 470
EaeI YGGCCR 1 cut(s) 36
EagI CGGCCG 1 cut(s) 36
Eam1105I GACNNNNNGTC 1 cut(s) 470
EciI GGCGGA 1 cut(s) 38
Ecl136II GAGCTC 1 cut(s) 537
EclXI CGGCCG 1 cut(s) 36
Eco130I CCWWGG 2 cut(s) 235, 732
Eco24I GRGCYC 1 cut(s) 539
Eco32I GATATC 1 cut(s) 610
Eco52I CGGCCG 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 537
EcoICRI GAGCTC 1 cut(s) 537
EcoRV GATATC 1 cut(s) 610
EcoT14I CCWWGG 2 cut(s) 235, 732
EcoT38I GRGCYC 1 cut(s) 539
ErhI CCWWGG 2 cut(s) 235, 732
FaeI CATG 2 cut(s) 340, 756
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FatI CATG 2 cut(s) 336, 752
FauI CCCGC 3 cut(s) 35, 65, 104
Fnu4HI GCNGC 7 cut(s) 85, 384, 393, 396, 434, 585, 729
FokI GGATG 3 cut(s) 175, 236, 695
FriOI GRGCYC 1 cut(s) 539
Fsp4HI GCNGC 7 cut(s) 85, 384, 393, 396, 434, 585, 729
GlaI GCGC 2 cut(s) 83, 110
GluI GCNGC 7 cut(s) 85, 384, 393, 396, 434, 585, 729
GsaI CCCAGC 1 cut(s) 82
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 35
HhaI GCGC 2 cut(s) 84, 111
Hin1II CATG 2 cut(s) 340, 756
Hin6I GCGC 2 cut(s) 82, 109
HinP1I GCGC 2 cut(s) 82, 109
HinfI GANTC 5 cut(s) 92, 326, 440, 523, 565
HpaII CCGG 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 2 cut(s) 193, 575
Hpy188III TCNNGA 2 cut(s) 540, 753
Hpy8I GTNNAC 1 cut(s) 172
HpyCH4V TGCA 6 cut(s) 188, 275, 291, 311, 386, 629
HpyF10VI GCNNNNNNNGC 6 cut(s) 31, 57, 303, 389, 392, 704
HpyF3I CTNAG 3 cut(s) 21, 281, 572
Hsp92II CATG 2 cut(s) 340, 756
HspAI GCGC 2 cut(s) 82, 109
KroI GCCGGC 1 cut(s) 34
KroNI GCCGGC 1 cut(s) 36
Kzo9I GATC 4 cut(s) 61, 231, 499, 555
LpnPI CCDG 8 cut(s) 48, 65, 92, 152, 422, 472, 482, 615
Lsp1109I GCAGC 7 cut(s) 96, 370, 379, 382, 420, 571, 715
LweI GCATC 3 cut(s) 121, 197, 379
MalI GATC 4 cut(s) 63, 233, 501, 557
MboI GATC 4 cut(s) 61, 231, 499, 555
MboII GAAGA 2 cut(s) 352, 560
MflI RGATCY 1 cut(s) 555
MhlI GDGCHC 1 cut(s) 539
MluCI AATT 6 cut(s) 370, 448, 508, 547, 669, 689
MlyI GAGTC 1 cut(s) 517
MnlI CCTC 6 cut(s) 77, 106, 454, 546, 673, 688
MroNI GCCGGC 1 cut(s) 34
MroXI GAANNNNTTC 1 cut(s) 344
MseI TTAA 2 cut(s) 405, 666
MslI CAYNNNNRTG 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 515
MspI CCGG 1 cut(s) 35
MvnI CGCG 3 cut(s) 60, 99, 111
MwoI GCNNNNNNNGC 6 cut(s) 31, 57, 303, 389, 392, 704
NaeI GCCGGC 1 cut(s) 36
NdeII GATC 4 cut(s) 61, 231, 499, 555
NgoMIV GCCGGC 1 cut(s) 34
NlaIII CATG 2 cut(s) 340, 756
NlaIV GGNNCC 2 cut(s) 557, 738
PagI TCATGA 1 cut(s) 752
PdiI GCCGGC 1 cut(s) 36
PdmI GAANNNNTTC 1 cut(s) 344
PfeI GAWTC 4 cut(s) 92, 326, 440, 565
PkrI GCNGC 7 cut(s) 86, 385, 394, 397, 435, 586, 730
PleI GAGTC 1 cut(s) 517
PpsI GAGTC 1 cut(s) 517
Psp124BI GAGCTC 1 cut(s) 539
PspFI CCCAGC 1 cut(s) 78
PspN4I GGNNCC 2 cut(s) 557, 738
PstI CTGCAG 1 cut(s) 388
PstNI CAGNNNCTG 1 cut(s) 392
PsuI RGATCY 1 cut(s) 555
PvuII CAGCTG 1 cut(s) 515
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
RseI CAYNNNNRTG 1 cut(s) 270
SacI GAGCTC 1 cut(s) 539
SaqAI TTAA 2 cut(s) 405, 666
SatI GCNGC 7 cut(s) 85, 384, 393, 396, 434, 585, 729
Sau3AI GATC 4 cut(s) 61, 231, 499, 555
SchI GAGTC 1 cut(s) 517
SduI GDGCHC 1 cut(s) 539
SetI ASST 9 cut(s) 171, 366, 435, 472, 480, 517, 539, 604, 709
SfaNI GCATC 3 cut(s) 121, 197, 379
SfcI CTRYAG 1 cut(s) 384
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 3 cut(s) 138, 538, 708
SmoI CTYRAG 3 cut(s) 138, 538, 708
Sse9I AATT 6 cut(s) 370, 448, 508, 547, 669, 689
SsiI CCGC 5 cut(s) 28, 49, 58, 97, 416
SstI GAGCTC 1 cut(s) 539
StyI CCWWGG 2 cut(s) 235, 732
TaqI TCGA 1 cut(s) 526
TaqII GACCGA 1 cut(s) 492
TasI AATT 6 cut(s) 370, 448, 508, 547, 669, 689
TfiI GAWTC 4 cut(s) 92, 326, 440, 565
Tru1I TTAA 2 cut(s) 405, 666
Tru9I TTAA 2 cut(s) 405, 666
TseI GCWGC 7 cut(s) 84, 383, 392, 395, 433, 584, 728
TspDTI ATGAA 4 cut(s) 17, 353, 578, 699
TspGWI ACGGA 1 cut(s) 258
XapI RAATTY 2 cut(s) 370, 508
XmnI GAANNNNTTC 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.