Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004058

Physical Location & Seq

Genomic Coordinates Forward (+)

31854596 .. 31857981

Gene Structure 3386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32450.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGAAGGGGCTGTTCAAGTCCAAGCCCAGAACCCCCGCCGATATAGTTCGGCAGACCCGAGATCGATCCTCGTCTATGCTCAGCGCGCTCCCGATTCTCGTGAAAGCAAACGCGAGGAAAAAGTCAGAGCTCTGTAAAAACATCAGGGAGCTGAAGTCGATTCTCTATGGAAATAGCGAGTCTGAACCCGTCTCAGAAGCATGTGCGCAGTTGACTCAGGAGTTTTTTAAAGAGAACACACTTCGACTTCTTATTACATGTCTTCCGAAATTGAACTTGGAGGCTCGAAAAGATGCCACTCAAGTGGTTGCAAACTTGCAGAGGCAACAAGTTCAGTCTAAGCTGATTGCATGTGATTACTTGGTAGCGAACATTGATTTGATGGATATTTTGATCCAAGGATATGGAAACACTGACATGGCTCTACACTATGGTGCAATGTTGAGGGAGTGCATACGTCACCAAAGTGTTGCAAGATATGTTTTGGAATCACAACACATGAAGAAGTTTTTTGATTATATACAGCTCCCCAATTTTGATATTGCTGCAGATGCTGCTGCAACTTTTAAGGAACTCTTGACGAGGCACAAATCCACTGTAGCAGATTTTCTTTCCAAGAACTATGATTGGTTTTTTGCGGAGTATAACTCAAAGCTACTGGAATCCTCCAATTATATTACCAGACGACAAGCTGTCAAGTTGTTAGGAGATATTTTGTTGGATCGGTCAAACTCAGCTGTGATGACTCGATATGTGAGCTCAAGGGACAACTTGAGGATCCTTATGAATCTTCTCAGAGAATCAAGCAAGAGCATTCAGATTGAAGCATTTCATGTCTTCAAGTTGTTTGCTGCTAATCAAAATAAACCCGCCGACATTGTGAGCATACTTGTTGCCAATAGAAGCAAGCTTTTACGGCTGTTTGCTGATTTTAAGATAGATAAAGAGGATGAACAATTTGAGGCAGACAAAGCTCAAGTAGTGAGAGAAATAGCTGCCATGGAACCCAAAGACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04150 ko04152 map04150 map04152

Pfam Domains

Protein Families

Mo25

Protein Analysis

340

Amino Acids

38.77

Weight (kDa)

9.19

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03410 AT4G17270 AT5G47540
fragaria_vesca	FvH4_3g00790 FvH4_6g41330
malus_domestica	MD05G1359100.v1.1 MD09G1120500.v1.1 MD10G1334800.v1.1 MD17G1111400.v1.1
prunus_persica	Prupe.3G203000_v2.0.a1 Prupe.4G008800_v2.0.a1
pyrus_communis	pycom05g32450 pycom10g28460
rosa_chinensis	RchiOBHm_Chr2g0156881 RchiOBHm_Chr5g0001041
rosa_laevigata	RLG00000020949 RLG00000030916
rosa_multiflora	Rmu_sc0000255.1_g000032 Rmu_sc0004189.1_g000003 Rmu_sc0011756.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075250 Rroxscaffold_2G00092630
rosa_rugosa	Rorug02G0456900 Rorug04G0389200
rosa_samantha	Rh2AG522500 Rh2BG535800 Rh2CG507400 Rh2DG544800 Rh5AG008400 Rh5CG009100 Rh5DG009300
rosa_wichuraiana	Rw2G043150 Rw5G000860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	207
AccII	CGCG	2 cut(s)	86, 113
AciI	CCGC	3 cut(s)	36, 638, 870
AclWI	GGATC	5 cut(s)	60, 388, 729, 772, 785
AcuI	CTGAAG	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	257
AgsI	TTSAA	4 cut(s)	16, 274, 824, 841
AhdI	GACNNNNNGTC	1 cut(s)	692
AjuI	GAANNNNNNNTTGG	2 cut(s)	260, 292
AleI	CACNNNNGTG	3 cut(s)	302, 432, 465
Alw21I	GWGCWC	2 cut(s)	132, 761
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	5 cut(s)	60, 388, 729, 772, 785
AlwNI	CAGNNNCTG	1 cut(s)	554
Ama87I	CYCGRG	1 cut(s)	57
ApeKI	GCWGC	5 cut(s)	545, 554, 557, 851, 995
Asp700I	GAANNNNTTC	1 cut(s)	828
AspLEI	GCGC	3 cut(s)	86, 88, 208
AsuHPI	GGTGA	1 cut(s)	452
AvaI	CYCGRG	1 cut(s)	57
BamHI	GGATCC	1 cut(s)	777
BanII	GRGCYC	2 cut(s)	132, 761
BauI	CACGAG	1 cut(s)	98
BbsI	GAAGAC	2 cut(s)	254, 829
Bbv12I	GWGCWC	2 cut(s)	132, 761
BbvI	GCAGC	5 cut(s)	532, 541, 544, 838, 982
BccI	CCATC	1 cut(s)	376
BceAI	ACGGC	1 cut(s)	932
BcoDI	GTCTC	1 cut(s)	196
BfmI	CTRYAG	2 cut(s)	546, 597
BisI	GCNGC	5 cut(s)	546, 555, 558, 852, 996
BlpI	GCTNAGC	1 cut(s)	80
BlsI	GCNGC	5 cut(s)	547, 556, 559, 853, 997
BmeRI	GACNNNNNGTC	1 cut(s)	692
BmeT110I	CYCGRG	1 cut(s)	57
BmiI	GGNNCC	2 cut(s)	779, 1005
BmsI	GCATC	2 cut(s)	283, 541
BpiI	GAAGAC	2 cut(s)	254, 829
BplI	GAGNNNNNCTC	2 cut(s)	632, 664
Bpu1102I	GCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	4 cut(s)	285, 745, 793, 960
Bsa29I	ATCGAT	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	397, 999
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bse1I	ACTGG	1 cut(s)	663
Bse3DI	GCAATG	1 cut(s)	444
BseCI	ATCGAT	1 cut(s)	64
BseDI	CCNNGG	2 cut(s)	397, 999
BseGI	GGATG	1 cut(s)	955
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	5 cut(s)	94, 207, 230, 747, 808
BseNI	ACTGG	1 cut(s)	663
BsePI	GCGCGC	1 cut(s)	84
BseXI	GCAGC	5 cut(s)	532, 541, 544, 838, 982
Bsh1236I	CGCG	2 cut(s)	86, 113
BshVI	ATCGAT	1 cut(s)	64
BsiHKAI	GWGCWC	2 cut(s)	132, 761
BsiHKCI	CYCGRG	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	779
BsmAI	GTCTC	1 cut(s)	196
BsmBI	CGTCTC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	779
BsmI	GAATGC	1 cut(s)	813
BsoBI	CYCGRG	1 cut(s)	57
Bsp1286I	GDGCHC	2 cut(s)	132, 761
Bsp143I	GATC	5 cut(s)	61, 65, 393, 721, 777
Bsp1720I	GCTNAGC	1 cut(s)	80
Bsp19I	CCATGG	1 cut(s)	999
BspACI	CCGC	3 cut(s)	36, 638, 870
BspCNI	CTCAG	5 cut(s)	93, 206, 229, 746, 807
BspDI	ATCGAT	1 cut(s)	64
BspFNI	CGCG	2 cut(s)	86, 113
BspHI	TCATGA	1 cut(s)	1016
BspLI	GGNNCC	2 cut(s)	779, 1005
BspMAI	CTGCAG	1 cut(s)	550
BspPI	GGATC	5 cut(s)	60, 388, 729, 772, 785
BsrDI	GCAATG	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	663
BssECI	CCNNGG	2 cut(s)	397, 999
BssHII	GCGCGC	1 cut(s)	84
BssMI	GATC	5 cut(s)	61, 65, 393, 721, 777
BssSI	CACGAG	1 cut(s)	98
BssT1I	CCWWGG	2 cut(s)	397, 999
Bst2BI	CACGAG	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	598
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstC8I	GCNNGC	2 cut(s)	86, 908
BstDEI	CTNAG	6 cut(s)	80, 193, 216, 339, 733, 794
BstDSI	CCRYGG	1 cut(s)	999
BstF5I	GGATG	1 cut(s)	955
BstFNI	CGCG	2 cut(s)	86, 113
BstHHI	GCGC	3 cut(s)	86, 88, 208
BstKTI	GATC	5 cut(s)	64, 68, 396, 724, 780
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	5 cut(s)	61, 65, 393, 721, 777
BstMWI	GCNNNNNNNGC	5 cut(s)	85, 551, 554, 916, 971
BstNSI	RCATGY	3 cut(s)	204, 261, 354
BstSFI	CTRYAG	2 cut(s)	546, 597
BstUI	CGCG	2 cut(s)	86, 113
BstV1I	GCAGC	5 cut(s)	532, 541, 544, 838, 982
BstV2I	GAAGAC	2 cut(s)	254, 829
BstX2I	RGATCY	1 cut(s)	777
BstXI	CCANNNNNNTGG	2 cut(s)	304, 404
BstYI	RGATCY	1 cut(s)	777
Bsu15I	ATCGAT	1 cut(s)	64
BsuTUI	ATCGAT	1 cut(s)	64
BtgI	CCRYGG	1 cut(s)	999
BtsCI	GGATG	1 cut(s)	955
BtsIMutI	CAGTG	2 cut(s)	411, 594
Cac8I	GCNNGC	2 cut(s)	86, 908
CaiI	CAGNNNCTG	1 cut(s)	554
CciI	TCATGA	1 cut(s)	1016
CfoI	GCGC	3 cut(s)	86, 88, 208
ClaI	ATCGAT	1 cut(s)	64
CviAII	CATG	8 cut(s)	201, 258, 351, 418, 499, 833, 1000, 1017
DdeI	CTNAG	6 cut(s)	80, 193, 216, 339, 733, 794
DpnI	GATC	5 cut(s)	63, 67, 395, 723, 779
DpnII	GATC	5 cut(s)	61, 65, 393, 721, 777
DraI	TTTAAA	1 cut(s)	229
DriI	GACNNNNNGTC	1 cut(s)	692
Eam1105I	GACNNNNNGTC	1 cut(s)	692
Ecl136II	GAGCTC	2 cut(s)	130, 759
Eco130I	CCWWGG	2 cut(s)	397, 999
Eco24I	GRGCYC	2 cut(s)	132, 761
Eco53kI	GAGCTC	2 cut(s)	130, 759
Eco57I	CTGAAG	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	57
EcoICRI	GAGCTC	2 cut(s)	130, 759
EcoT14I	CCWWGG	2 cut(s)	397, 999
EcoT38I	GRGCYC	2 cut(s)	132, 761
ErhI	CCWWGG	2 cut(s)	397, 999
Esp3I	CGTCTC	1 cut(s)	196
FaeI	CATG	8 cut(s)	204, 261, 354, 421, 502, 836, 1003, 1020
FalI	AAGNNNNNCTT	2 cut(s)	560, 592
FaqI	GGGAC	1 cut(s)	779
FatI	CATG	8 cut(s)	200, 257, 350, 417, 498, 832, 999, 1016
FauI	CCCGC	2 cut(s)	43, 877
Fnu4HI	GCNGC	5 cut(s)	546, 555, 558, 852, 996
FokI	GGATG	1 cut(s)	962
FriOI	GRGCYC	2 cut(s)	132, 761
Fsp4HI	GCNGC	5 cut(s)	546, 555, 558, 852, 996
FspI	TGCGCA	1 cut(s)	207
GlaI	GCGC	3 cut(s)	85, 87, 207
GluI	GCNGC	5 cut(s)	546, 555, 558, 852, 996
HhaI	GCGC	3 cut(s)	86, 88, 208
Hin1II	CATG	8 cut(s)	204, 261, 354, 421, 502, 836, 1003, 1020
Hin6I	GCGC	3 cut(s)	84, 86, 206
HinP1I	GCGC	3 cut(s)	84, 86, 206
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HindIII	AAGCTT	1 cut(s)	908
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	6 cut(s)	127, 184, 196, 267, 797, 819
Hpy188III	TCNNGA	5 cut(s)	91, 100, 218, 577, 1017
Hpy8I	GTNNAC	1 cut(s)	213
HpyCH4III	ACNGT	1 cut(s)	598
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	8 cut(s)	311, 319, 350, 437, 453, 473, 548, 560
HpyF10VI	GCNNNNNNNGC	5 cut(s)	85, 551, 554, 916, 971
HpyF3I	CTNAG	6 cut(s)	80, 193, 216, 339, 733, 794
HpySE526I	ACGT	1 cut(s)	457
Hsp92II	CATG	8 cut(s)	204, 261, 354, 421, 502, 836, 1003, 1020
HspAI	GCGC	3 cut(s)	84, 86, 206
Kzo9I	GATC	5 cut(s)	61, 65, 393, 721, 777
LmnI	GCTCC	3 cut(s)	93, 148, 531
LpnPI	CCDG	5 cut(s)	40, 130, 203, 644, 694
Lsp1109I	GCAGC	5 cut(s)	532, 541, 544, 838, 982
LweI	GCATC	2 cut(s)	283, 541
MaeII	ACGT	1 cut(s)	457
MaeIII	GTNAC	1 cut(s)	458
MalI	GATC	5 cut(s)	63, 67, 395, 723, 779
MboI	GATC	5 cut(s)	61, 65, 393, 721, 777
MboII	GAAGA	4 cut(s)	254, 514, 782, 829
MflI	RGATCY	1 cut(s)	777
MhlI	GDGCHC	2 cut(s)	132, 761
MluCI	AATT	4 cut(s)	269, 532, 670, 956
MlyI	GAGTC	4 cut(s)	188, 208, 739, 1007
MmeI	TCCRAC	1 cut(s)	699
MroXI	GAANNNNTTC	1 cut(s)	828
MseI	TTAA	3 cut(s)	228, 567, 933
MslI	CAYNNNNRTG	4 cut(s)	302, 416, 432, 465
MspA1I	CMGCKG	1 cut(s)	737
Mva1269I	GAATGC	1 cut(s)	813
MvnI	CGCG	2 cut(s)	86, 113
MwoI	GCNNNNNNNGC	5 cut(s)	85, 551, 554, 916, 971
NcoI	CCATGG	1 cut(s)	999
NdeII	GATC	5 cut(s)	61, 65, 393, 721, 777
NlaIII	CATG	8 cut(s)	204, 261, 354, 421, 502, 836, 1003, 1020
NlaIV	GGNNCC	2 cut(s)	779, 1005
NmuCI	GTSAC	1 cut(s)	458
NsbI	TGCGCA	1 cut(s)	207
NspI	RCATGY	3 cut(s)	204, 261, 354
OliI	CACNNNNGTG	3 cut(s)	302, 432, 465
PagI	TCATGA	1 cut(s)	1016
PauI	GCGCGC	1 cut(s)	84
PciI	ACATGT	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	55
PctI	GAATGC	1 cut(s)	813
PdmI	GAANNNNTTC	1 cut(s)	828
PfeI	GAWTC	6 cut(s)	94, 160, 488, 662, 787, 800
PkrI	GCNGC	5 cut(s)	547, 556, 559, 853, 997
PleI	GAGTC	4 cut(s)	187, 208, 739, 1007
PpsI	GAGTC	4 cut(s)	187, 208, 739, 1007
PscI	ACATGT	1 cut(s)	257
Psp124BI	GAGCTC	2 cut(s)	132, 761
PspN4I	GGNNCC	2 cut(s)	779, 1005
PstI	CTGCAG	1 cut(s)	550
PstNI	CAGNNNCTG	1 cut(s)	554
PsuI	RGATCY	1 cut(s)	777
PteI	GCGCGC	1 cut(s)	84
PvuII	CAGCTG	1 cut(s)	737
RseI	CAYNNNNRTG	4 cut(s)	302, 416, 432, 465
SacI	GAGCTC	2 cut(s)	132, 761
SaqAI	TTAA	3 cut(s)	228, 567, 933
SatI	GCNGC	5 cut(s)	546, 555, 558, 852, 996
Sau3AI	GATC	5 cut(s)	61, 65, 393, 721, 777
SchI	GAGTC	4 cut(s)	188, 208, 739, 1007
SduI	GDGCHC	2 cut(s)	132, 761
SfaNI	GCATC	2 cut(s)	283, 541
SfcI	CTRYAG	2 cut(s)	546, 597
SmiMI	CAYNNNNRTG	4 cut(s)	302, 416, 432, 465
SmlI	CTYRAG	4 cut(s)	300, 760, 772, 975
SmoI	CTYRAG	4 cut(s)	300, 760, 772, 975
Sse9I	AATT	4 cut(s)	269, 532, 670, 956
SsiI	CCGC	3 cut(s)	36, 638, 870
SstI	GAGCTC	2 cut(s)	132, 761
StyI	CCWWGG	2 cut(s)	397, 999
TaaI	ACNGT	1 cut(s)	598
TaiI	ACGT	1 cut(s)	460
TaqI	TCGA	5 cut(s)	64, 158, 244, 286, 748
TaqII	GACCGA	1 cut(s)	714
TasI	AATT	4 cut(s)	269, 532, 670, 956
TfiI	GAWTC	6 cut(s)	94, 160, 488, 662, 787, 800
Tru1I	TTAA	3 cut(s)	228, 567, 933
Tru9I	TTAA	3 cut(s)	228, 567, 933
TscAI	CASTG	2 cut(s)	418, 601
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	5 cut(s)	545, 554, 557, 851, 995
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	5 cut(s)	17, 515, 800, 821, 966
TspRI	CASTG	2 cut(s)	418, 601
XceI	RCATGY	3 cut(s)	204, 261, 354
XmnI	GAANNNNTTC	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.