Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004058

Physical Location & Seq

Genomic Coordinates Forward (+)

29064809 .. 29068728

Gene Structure 3920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g28460.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGATTCATCGGGCGTGGAGGCAAGGCTAAATTGGTTGTGGAGTAAATTAGGAAAAGGGAAAAACACAATTAGGAACGCCAGAAGTAACCTACGAGTCCACGACAGACAAACAACAATTGGAATCTGTACGTCCAACCAAGGTGGGGAGCAGCGGAGAGCCGCCTCTAGCCTTCTTCTGCCGGCGCTGAGGCCCTCTTCTCAGCCACCGCCGCAACCGCCGCAGCAGCATCAGGATAAACGACCCCATCGCAGCCAAAGCGCCAACAGCAACAAGATGAAGGGATTATTCAAGTCCAAGCCCCGAACCCCCGCCGACATCGTTCGTCAGACCCGGGATTTACTCGTCTATGCCCAGCGCGCTCCCGATTCTCGCGAAAGCAAACGCGAGGAAAAGATGTCAGAGCTATGTAAAAACATAAGGGAGCTGAAGTCGATTCTCTACGGCAATAGTGAGTCTGAACCCGTTTCAGAAGCTTGTGCCCAGTTGACCCATGAGTTTTTTAAAGAGAACACACTTCGACTTCTTATTACATGTCTTCCGAAATTGAACTTGGAGGCTCGAAAAGATGCCACTCAAGTTGTGGCAAATTTGCAAAGGCAACAAGTTCAGTCCAAGTTGATTGCATCTGATTACTTGGAAGCGAACATTGATTTGATGGATATTTTGATCCAAGGGTATGGAAACACCGACATGGCTCTGCATTATGGTGCAATGTTGAGGGAGTGCATACGTCACCAAAGTGTTGCAAGATATGTTTTAGAATCAGAACACATGAAGAAGTTCTTTGATTATATACAACTCCCCAATTTTGATATTGCGGCAGATGCTGCTGCAACTTTTAAGGAGCTCTTGACAAGGCACAAATCTACTGTAGCGGATTTTCTTTCCAAGAACTATGATTGGTTTTTTGCTGAGTATAACTCAAAGCTACTGGAATCACCCAATTACATTACCAGACGACAAGCTGTTAAGTTGTTAGGAGATATTTTGTTGGATCGGTCAAACTCAGCTGTGATGACTCGATATGTGAGTTCAAGGGACAACTTGAGGATCCTTATGAACCTTCTCAGAGAGTCAAGCAAGAGCATTCAGATTGAAGCATTTCATGTTTTCAAGCTATTTGCTGCTAATCAAAATAAACCCGCCGACATTGTGAGCATACTTGTCGCCAATAGAAGCAAACTTCTACGACTGTTTGCTGATTTTAAGATAGATAAAGAGGATGAACAATTTGAGGCAGACAAAGCTCAAGTAGTGAGAGAAATAGCTGCCATGGAACCTAAAGACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04150 ko04152 map04150 map04152

Pfam Domains

Protein Families

Mo25

Protein Analysis

432

Amino Acids

49.26

Weight (kDa)

9.4

Isoelectric Point (pI)

56.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03410 AT4G17270 AT5G47540
fragaria_vesca	FvH4_3g00790 FvH4_6g41330
malus_domestica	MD05G1359100.v1.1 MD09G1120500.v1.1 MD10G1334800.v1.1 MD17G1111400.v1.1
prunus_persica	Prupe.3G203000_v2.0.a1 Prupe.4G008800_v2.0.a1
pyrus_communis	pycom05g32450 pycom10g28460
rosa_chinensis	RchiOBHm_Chr2g0156881 RchiOBHm_Chr5g0001041
rosa_laevigata	RLG00000020949 RLG00000030916
rosa_multiflora	Rmu_sc0000255.1_g000032 Rmu_sc0004189.1_g000003 Rmu_sc0011756.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075250 Rroxscaffold_2G00092630
rosa_rugosa	Rorug02G0456900 Rorug04G0389200
rosa_samantha	Rh2AG522500 Rh2BG535800 Rh2CG507400 Rh2DG544800 Rh5AG008400 Rh5CG009100 Rh5DG009300
rosa_wichuraiana	Rw2G043150 Rw5G000860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	360, 375, 387
AclWI	GGATC	4 cut(s)	664, 1005, 1048, 1061
AcsI	RAATTY	1 cut(s)	589
AcuI	CTGAAG	1 cut(s)	449
AfaI	GTAC	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	145
AflIII	ACRYGT	1 cut(s)	533
AgsI	TTSAA	5 cut(s)	292, 550, 1038, 1100, 1117
AjuI	GAANNNNNNNTTGG	2 cut(s)	536, 568
AleI	CACNNNNGTG	1 cut(s)	741
Alw21I	GWGCWC	1 cut(s)	852
AlwI	GGATC	4 cut(s)	664, 1005, 1048, 1061
AlwNI	CAGNNNCTG	1 cut(s)	830
Ama87I	CYCGRG	1 cut(s)	333
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	8 cut(s)	151, 223, 226, 252, 830, 833, 1127, 1271
ApoI	RAATTY	1 cut(s)	589
Asp700I	GAANNNNTTC	2 cut(s)	782, 1104
AspLEI	GCGC	4 cut(s)	187, 263, 360, 362
AspS9I	GGNCC	1 cut(s)	192
AsuC2I	CCSGG	2 cut(s)	334, 335
AsuHPI	GGTGA	2 cut(s)	728, 933
AvaI	CYCGRG	1 cut(s)	333
BaeGI	GKGCMC	1 cut(s)	484
BamHI	GGATCC	1 cut(s)	1053
BanII	GRGCYC	1 cut(s)	852
BbsI	GAAGAC	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	852
BbvCI	CCTCAGC	1 cut(s)	188
BbvI	GCAGC	8 cut(s)	163, 235, 238, 264, 817, 820, 1114, 1258
BccI	CCATC	2 cut(s)	255, 652
BceAI	ACGGC	1 cut(s)	460
BcgI	CGANNNNNNTGC	2 cut(s)	1150, 1184
BcnI	CCSGG	2 cut(s)	334, 335
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	873
BfoI	RGCGCY	2 cut(s)	188, 264
Bme1390I	CCNGG	2 cut(s)	334, 335
BmeT110I	CYCGRG	1 cut(s)	333
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	2 cut(s)	1055, 1281
BmrFI	CCNGG	2 cut(s)	334, 335
BmrI	ACTGGG	1 cut(s)	478
BmsI	GCATC	4 cut(s)	238, 559, 635, 817
BmuI	ACTGGG	1 cut(s)	478
BpiI	GAAGAC	1 cut(s)	530
BplI	GAGNNNNNCTC	2 cut(s)	908, 940
Bpu10I	CCTNAGC	1 cut(s)	188
BpuEI	CTTGAG	3 cut(s)	561, 1069, 1236
BpuMI	CCSGG	2 cut(s)	334, 335
BsaJI	CCNNGG	4 cut(s)	139, 333, 673, 1275
BsaXI	ACNNNNNCTCC	2 cut(s)	416, 446
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse118I	RCCGGY	1 cut(s)	181
Bse1I	ACTGG	2 cut(s)	484, 939
Bse3DI	GCAATG	1 cut(s)	720
BseDI	CCNNGG	4 cut(s)	139, 333, 673, 1275
BseGI	GGATG	1 cut(s)	1231
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMI	GCAATG	1 cut(s)	720
BseMII	CTCAG	5 cut(s)	179, 215, 906, 1023, 1084
BseNI	ACTGG	2 cut(s)	484, 939
BsePI	GCGCGC	1 cut(s)	358
BseSI	GKGCMC	1 cut(s)	484
BseXI	GCAGC	8 cut(s)	163, 235, 238, 264, 817, 820, 1114, 1258
BseYI	CCCAGC	1 cut(s)	354
Bsh1236I	CGCG	3 cut(s)	360, 375, 387
BshFI	GGCC	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	852
BsiHKCI	CYCGRG	1 cut(s)	333
BsiSI	CCGG	2 cut(s)	182, 334
BslFI	GGGAC	1 cut(s)	1055
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	1055
BsmI	GAATGC	1 cut(s)	1089
BsnI	GGCC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	333
Bsp1286I	GDGCHC	2 cut(s)	484, 852
Bsp143I	GATC	3 cut(s)	669, 997, 1053
Bsp19I	CCATGG	1 cut(s)	1275
Bsp68I	TCGCGA	1 cut(s)	375
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	5 cut(s)	180, 214, 907, 1022, 1083
BspFNI	CGCG	3 cut(s)	360, 375, 387
BspHI	TCATGA	1 cut(s)	1292
BspLI	GGNNCC	2 cut(s)	1055, 1281
BspPI	GGATC	4 cut(s)	664, 1005, 1048, 1061
BsrDI	GCAATG	1 cut(s)	720
BsrFI	RCCGGY	1 cut(s)	181
BsrI	ACTGG	2 cut(s)	484, 939
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	4 cut(s)	139, 333, 673, 1275
BssHII	GCGCGC	1 cut(s)	358
BssMI	GATC	3 cut(s)	669, 997, 1053
BssT1I	CCWWGG	3 cut(s)	139, 673, 1275
Bst4CI	ACNGT	2 cut(s)	874, 1197
Bst6I	CTCTTC	1 cut(s)	202
BstAPI	GCANNNNNTGC	1 cut(s)	830
BstC8I	GCNNGC	2 cut(s)	183, 360
BstDEI	CTNAG	5 cut(s)	188, 201, 915, 1009, 1070
BstDSI	CCRYGG	1 cut(s)	1275
BstF5I	GGATG	1 cut(s)	1231
BstFNI	CGCG	3 cut(s)	360, 375, 387
BstH2I	RGCGCY	2 cut(s)	188, 264
BstHHI	GCGC	4 cut(s)	187, 263, 360, 362
BstKTI	GATC	3 cut(s)	672, 1000, 1056
BstMBI	GATC	3 cut(s)	669, 997, 1053
BstNSI	RCATGY	1 cut(s)	537
BstSCI	CCNGG	2 cut(s)	332, 333
BstSFI	CTRYAG	1 cut(s)	873
BstSLI	GKGCMC	1 cut(s)	484
BstUI	CGCG	3 cut(s)	360, 375, 387
BstV1I	GCAGC	8 cut(s)	163, 235, 238, 264, 817, 820, 1114, 1258
BstV2I	GAAGAC	1 cut(s)	530
BstX2I	RGATCY	1 cut(s)	1053
BstXI	CCANNNNNNTGG	1 cut(s)	680
BstYI	RGATCY	1 cut(s)	1053
BsuRI	GGCC	1 cut(s)	193
BtgI	CCRYGG	1 cut(s)	1275
BtgZI	GCGATG	1 cut(s)	233
BtsCI	GGATG	1 cut(s)	1231
BtuMI	TCGCGA	1 cut(s)	375
Cac8I	GCNNGC	2 cut(s)	183, 360
CaiI	CAGNNNCTG	1 cut(s)	830
CciI	TCATGA	1 cut(s)	1292
CfoI	GCGC	4 cut(s)	187, 263, 360, 362
Cfr10I	RCCGGY	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	192
Cfr9I	CCCGGG	1 cut(s)	333
Csp6I	GTAC	1 cut(s)	129
CspCI	CAANNNNNGTGG	4 cut(s)	124, 159, 562, 597
CviAII	CATG	7 cut(s)	494, 534, 694, 775, 1109, 1276, 1293
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	5 cut(s)	188, 201, 915, 1009, 1070
DpnI	GATC	3 cut(s)	671, 999, 1055
DpnII	GATC	3 cut(s)	669, 997, 1053
DraI	TTTAAA	1 cut(s)	505
Eam1104I	CTCTTC	1 cut(s)	202
EarI	CTCTTC	1 cut(s)	202
Ecl136II	GAGCTC	1 cut(s)	850
Eco130I	CCWWGG	3 cut(s)	139, 673, 1275
Eco24I	GRGCYC	1 cut(s)	852
Eco53kI	GAGCTC	1 cut(s)	850
Eco57I	CTGAAG	1 cut(s)	449
Eco88I	CYCGRG	1 cut(s)	333
EcoICRI	GAGCTC	1 cut(s)	850
EcoO109I	RGGNCCY	1 cut(s)	192
EcoT14I	CCWWGG	3 cut(s)	139, 673, 1275
EcoT38I	GRGCYC	1 cut(s)	852
ErhI	CCWWGG	3 cut(s)	139, 673, 1275
FaeI	CATG	7 cut(s)	497, 537, 697, 778, 1112, 1279, 1296
FalI	AAGNNNNNCTT	4 cut(s)	770, 802, 836, 868
FaqI	GGGAC	1 cut(s)	1055
FatI	CATG	7 cut(s)	493, 533, 693, 774, 1108, 1275, 1292
FauI	CCCGC	2 cut(s)	319, 1153
FokI	GGATG	1 cut(s)	1238
FriOI	GRGCYC	1 cut(s)	852
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	4 cut(s)	186, 262, 359, 361
GsaI	CCCAGC	1 cut(s)	358
HaeII	RGCGCY	2 cut(s)	188, 264
HaeIII	GGCC	1 cut(s)	193
HapII	CCGG	2 cut(s)	182, 334
HhaI	GCGC	4 cut(s)	187, 263, 360, 362
Hin1II	CATG	7 cut(s)	497, 537, 697, 778, 1112, 1279, 1296
Hin6I	GCGC	4 cut(s)	185, 261, 358, 360
HinP1I	GCGC	4 cut(s)	185, 261, 358, 360
HincII	GTYRAC	1 cut(s)	489
HindII	GTYRAC	1 cut(s)	489
HindIII	AAGCTT	1 cut(s)	474
HpaII	CCGG	2 cut(s)	182, 334
HphI	GGTGA	2 cut(s)	728, 933
Hpy166II	GTNNAC	2 cut(s)	100, 489
Hpy188I	TCNGA	9 cut(s)	330, 403, 460, 472, 543, 631, 769, 1073, 1095
Hpy188III	TCNNGA	5 cut(s)	233, 365, 374, 853, 1293
Hpy8I	GTNNAC	2 cut(s)	100, 489
HpyAV	CCTTC	3 cut(s)	182, 274, 1076
HpyCH4III	ACNGT	2 cut(s)	874, 1197
HpyCH4IV	ACGT	2 cut(s)	131, 733
HpyCH4V	TGCA	7 cut(s)	595, 626, 703, 713, 729, 749, 836
HpyF3I	CTNAG	5 cut(s)	188, 201, 915, 1009, 1070
HpySE526I	ACGT	2 cut(s)	131, 733
Hsp92II	CATG	7 cut(s)	497, 537, 697, 778, 1112, 1279, 1296
HspAI	GCGC	4 cut(s)	185, 261, 358, 360
KroI	GCCGGC	1 cut(s)	181
KroNI	GCCGGC	1 cut(s)	183
Kzo9I	GATC	3 cut(s)	669, 997, 1053
LmnI	GCTCC	4 cut(s)	148, 367, 424, 847
LpnPI	CCDG	8 cut(s)	94, 195, 218, 347, 368, 497, 920, 970
Lsp1109I	GCAGC	8 cut(s)	163, 235, 238, 264, 817, 820, 1114, 1258
LweI	GCATC	4 cut(s)	238, 559, 635, 817
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	2 cut(s)	131, 733
MaeIII	GTNAC	2 cut(s)	86, 734
MalI	GATC	3 cut(s)	671, 999, 1055
MboI	GATC	3 cut(s)	669, 997, 1053
MboII	GAAGA	4 cut(s)	167, 189, 530, 790
MfeI	CAATTG	1 cut(s)	117
MflI	RGATCY	1 cut(s)	1053
MhlI	GDGCHC	2 cut(s)	484, 852
MluCI	AATT	9 cut(s)	31, 47, 69, 117, 545, 589, 808, 946, 1232
MlyI	GAGTC	5 cut(s)	105, 464, 1015, 1085, 1283
MmeI	TCCRAC	2 cut(s)	159, 975
MroNI	GCCGGC	1 cut(s)	181
MroXI	GAANNNNTTC	2 cut(s)	782, 1104
MseI	TTAA	4 cut(s)	504, 843, 972, 1209
MslI	CAYNNNNRTG	3 cut(s)	692, 708, 741
MspA1I	CMGCKG	2 cut(s)	154, 1013
MspI	CCGG	2 cut(s)	182, 334
MspR9I	CCNGG	2 cut(s)	334, 335
MunI	CAATTG	1 cut(s)	117
Mva1269I	GAATGC	1 cut(s)	1089
MvnI	CGCG	3 cut(s)	360, 375, 387
NaeI	GCCGGC	1 cut(s)	183
NciI	CCSGG	2 cut(s)	334, 335
NcoI	CCATGG	1 cut(s)	1275
NdeII	GATC	3 cut(s)	669, 997, 1053
NgoMIV	GCCGGC	1 cut(s)	181
NlaIII	CATG	7 cut(s)	497, 537, 697, 778, 1112, 1279, 1296
NlaIV	GGNNCC	2 cut(s)	1055, 1281
NmuCI	GTSAC	1 cut(s)	734
NruI	TCGCGA	1 cut(s)	375
NspI	RCATGY	1 cut(s)	537
OliI	CACNNNNGTG	1 cut(s)	741
PagI	TCATGA	1 cut(s)	1292
PauI	GCGCGC	1 cut(s)	358
PciI	ACATGT	1 cut(s)	533
PctI	GAATGC	1 cut(s)	1089
PdiI	GCCGGC	1 cut(s)	183
PdmI	GAANNNNTTC	2 cut(s)	782, 1104
PfeI	GAWTC	6 cut(s)	5, 123, 368, 436, 764, 938
PleI	GAGTC	5 cut(s)	104, 463, 1015, 1084, 1283
PpsI	GAGTC	5 cut(s)	104, 463, 1015, 1084, 1283
PscI	ACATGT	1 cut(s)	533
Psp124BI	GAGCTC	1 cut(s)	852
PspFI	CCCAGC	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	1055, 1281
PspPI	GGNCC	1 cut(s)	192
PstNI	CAGNNNCTG	1 cut(s)	830
PsuI	RGATCY	1 cut(s)	1053
PteI	GCGCGC	1 cut(s)	358
PvuII	CAGCTG	1 cut(s)	1013
RruI	TCGCGA	1 cut(s)	375
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
RseI	CAYNNNNRTG	3 cut(s)	692, 708, 741
SacI	GAGCTC	1 cut(s)	852
SaqAI	TTAA	4 cut(s)	504, 843, 972, 1209
Sau3AI	GATC	3 cut(s)	669, 997, 1053
Sau96I	GGNCC	1 cut(s)	192
SchI	GAGTC	5 cut(s)	105, 464, 1015, 1085, 1283
ScrFI	CCNGG	2 cut(s)	334, 335
SduI	GDGCHC	2 cut(s)	484, 852
SfaNI	GCATC	4 cut(s)	238, 559, 635, 817
SfcI	CTRYAG	1 cut(s)	873
SmaI	CCCGGG	1 cut(s)	335
SmiMI	CAYNNNNRTG	3 cut(s)	692, 708, 741
SmlI	CTYRAG	3 cut(s)	576, 1048, 1251
SmoI	CTYRAG	3 cut(s)	576, 1048, 1251
Sse9I	AATT	9 cut(s)	31, 47, 69, 117, 545, 589, 808, 946, 1232
SspMI	CTAG	1 cut(s)	168
SstI	GAGCTC	1 cut(s)	852
StyD4I	CCNGG	2 cut(s)	332, 333
StyI	CCWWGG	3 cut(s)	139, 673, 1275
TaaI	ACNGT	2 cut(s)	874, 1197
TaiI	ACGT	2 cut(s)	134, 736
TaqI	TCGA	4 cut(s)	434, 520, 562, 1024
TaqII	GACCGA	1 cut(s)	990
TasI	AATT	9 cut(s)	31, 47, 69, 117, 545, 589, 808, 946, 1232
TauI	GCSGC	4 cut(s)	164, 214, 223, 824
TfiI	GAWTC	6 cut(s)	5, 123, 368, 436, 764, 938
Tru1I	TTAA	4 cut(s)	504, 843, 972, 1209
Tru9I	TTAA	4 cut(s)	504, 843, 972, 1209
TseFI	GTSAC	1 cut(s)	734
TseI	GCWGC	8 cut(s)	151, 223, 226, 252, 830, 833, 1127, 1271
Tsp45I	GTSAC	1 cut(s)	734
TspDTI	ATGAA	5 cut(s)	293, 791, 1076, 1097, 1242
TspMI	CCCGGG	1 cut(s)	333
XapI	RAATTY	1 cut(s)	589
XceI	RCATGY	1 cut(s)	537
XcmI	CCANNNNNNNNNTGG	1 cut(s)	580
XmaI	CCCGGG	1 cut(s)	333
XmnI	GAANNNNTTC	2 cut(s)	782, 1104
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.