Rh2CG507400

MO25-like protein At5g47540

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0004058
Physical Location & Seq
Reverse (-)
67919987 .. 67922985
2999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG507400.1

Sequence Viewer

Length: 807 bp
ATGAAGGGTCTTCTCAAGAAATCCAAGGCACGCAAGCCTTTGGAGCTCGTCAAGCACACGCGCGAGCTTCTCATCTTCTTCAATGGCAACATGGAAGTCCGCGAGCAGAAACGCAAAGACAAGATGGAAGAATTAACAAAATCAATGTTGGAGATAAGAACACTTCTGTATGGCGATGGTGAATCAGAGCCGAATAAAGACACTTGTGCACAGCTTACCCAGGAATTTTTCAAAGATGATACGTTCCGCCTTCTCATTGCTAGCCTTTCGAAGCTCAACCTTGGGACTCGTAAAAACGCAACACATATTGTCGCAAATTTGCAAAGGCAACAGGTTCAATCGCGATTGATTGCTTCTGAGTACTTGGAAAAGAATATTGATCTTATAGATATTCTGATACCTGGTTATGGAGACGGTGATATTGCTCTATCTTATGGTGCAATTTTAAGGGAATGCATTCGTCATCAGGTTGTTGCGAGGTACGTCCTGGAATCAGACCACATGAAGAAGTTCTTTGATTATATACAACTTCCAAATTTTGAAATAGCATCGGATGCTGCAGCCACTTTCAAGGAGCTTATGACCAGGCATAAGTCAACAGTTGCACAATTTTTGTCTAATAATTATGACTGGTTTTTCCAAGAATATAATTCGCAGTTGCTGGAGTCTCAGAATTACATCACCAAACGGCAGGCTATCAAGCTGTTAGGAAATATGTTACTGGATCGCTCAAACTCTGCTGTGATGGTTCGATACGTGTGCTCTTTGGATAACATGAGAATCCTAATGAACCTTCTCAGGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04150 ko04152 map04150 map04152
Pfam Domains
Protein Families
Mo25

Protein Analysis

268

Amino Acids

31.17

Weight (kDa)

9.08

Isoelectric Point (pI)

34.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mo25 PF08569 5 - 267 5.4e-92 Mo25-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 61, 63, 102, 343
AciI CCGC 2 cut(s) 100, 247
AclWI GGATC 1 cut(s) 732
AcsI RAATTY 3 cut(s) 224, 316, 535
AfaI GTAC 2 cut(s) 362, 482
AfiI CCNNNNNNNGG 2 cut(s) 407, 799
AflIII ACRYGT 1 cut(s) 756
AgsI TTSAA 5 cut(s) 82, 232, 338, 542, 571
AjnI CCWGG 4 cut(s) 219, 400, 486, 584
AluBI AGCT 6 cut(s) 46, 67, 214, 274, 577, 703
AluI AGCT 6 cut(s) 46, 67, 214, 274, 577, 703
Alw21I GWGCWC 3 cut(s) 48, 211, 764
Alw26I GTCTC 2 cut(s) 405, 672
Alw44I GTGCAC 1 cut(s) 207
AlwI GGATC 1 cut(s) 732
AlwNI CAGNNNCTG 1 cut(s) 661
ApaLI GTGCAC 1 cut(s) 207
ApeKI GCWGC 2 cut(s) 557, 560
ApoI RAATTY 3 cut(s) 224, 316, 535
Asp700I GAANNNNTTC 2 cut(s) 456, 509
AspLEI GCGC 1 cut(s) 63
AsuHPI GGTGA 3 cut(s) 191, 428, 673
AsuII TTCGAA 1 cut(s) 269
AsuNHI GCTAGC 1 cut(s) 260
BaeGI GKGCMC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 2
Bbv12I GWGCWC 3 cut(s) 48, 211, 764
BbvI GCAGC 2 cut(s) 544, 572
BccI CCATC 3 cut(s) 118, 170, 739
BceAI ACGGC 1 cut(s) 704
BcgI CGANNNNNNTGC 2 cut(s) 741, 775
BciT130I CCWGG 4 cut(s) 221, 402, 488, 586
BcoDI GTCTC 2 cut(s) 405, 672
BfaI CTAG 1 cut(s) 261
BfmI CTRYAG 1 cut(s) 558
BisI GCNGC 2 cut(s) 558, 561
BlsI GCNGC 2 cut(s) 559, 562
BmcAI AGTACT 1 cut(s) 362
Bme1390I CCNGG 4 cut(s) 221, 402, 488, 586
BmrFI CCNGG 4 cut(s) 221, 402, 488, 586
BmsI GCATC 2 cut(s) 544, 557
BmtI GCTAGC 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 2
BpmI CTGGAG 1 cut(s) 683
Bpu14I TTCGAA 1 cut(s) 269
BsaAI YACGTR 1 cut(s) 757
BsaJI CCNNGG 3 cut(s) 24, 219, 280
Bsc4I CCNNNNNNNGG 2 cut(s) 407, 799
Bse1I ACTGG 2 cut(s) 635, 726
Bse3DI GCAATG 1 cut(s) 255
BseBI CCWGG 4 cut(s) 221, 402, 488, 586
BseDI CCNNGG 3 cut(s) 24, 219, 280
BseGI GGATG 1 cut(s) 559
BseLI CCNNNNNNNGG 2 cut(s) 407, 799
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 2 cut(s) 348, 683
BseNI ACTGG 2 cut(s) 635, 726
BseSI GKGCMC 1 cut(s) 211
BseXI GCAGC 2 cut(s) 544, 572
Bsh1236I CGCG 4 cut(s) 61, 63, 102, 343
BsiHKAI GWGCWC 3 cut(s) 48, 211, 764
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 2 cut(s) 407, 799
BsmAI GTCTC 2 cut(s) 405, 672
BsmBI CGTCTC 1 cut(s) 405
BsmFI GGGAC 1 cut(s) 298
BsmI GAATGC 2 cut(s) 456, 458
Bsp119I TTCGAA 1 cut(s) 269
Bsp1286I GDGCHC 3 cut(s) 48, 211, 764
Bsp143I GATC 2 cut(s) 379, 724
Bsp68I TCGCGA 1 cut(s) 343
BspACI CCGC 2 cut(s) 100, 247
BspCNI CTCAG 2 cut(s) 349, 682
BspFNI CGCG 4 cut(s) 61, 63, 102, 343
BspMAI CTGCAG 1 cut(s) 562
BspOI GCTAGC 1 cut(s) 264
BspPI GGATC 1 cut(s) 732
BspT104I TTCGAA 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 255
BsrI ACTGG 2 cut(s) 635, 726
BssECI CCNNGG 3 cut(s) 24, 219, 280
BssMI GATC 2 cut(s) 379, 724
BssT1I CCWWGG 2 cut(s) 24, 280
Bst2UI CCWGG 4 cut(s) 221, 402, 488, 586
Bst4CI ACNGT 2 cut(s) 416, 601
BstAPI GCANNNNNTGC 1 cut(s) 554
BstBAI YACGTR 1 cut(s) 757
BstBI TTCGAA 1 cut(s) 269
BstC8I GCNNGC 6 cut(s) 31, 35, 65, 104, 262, 693
BstDEI CTNAG 3 cut(s) 357, 669, 797
BstF5I GGATG 1 cut(s) 559
BstFNI CGCG 4 cut(s) 61, 63, 102, 343
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 2 cut(s) 382, 727
BstMAI GTCTC 2 cut(s) 405, 672
BstMBI GATC 2 cut(s) 379, 724
BstMWI GCNNNNNNNGC 3 cut(s) 43, 52, 554
BstNI CCWGG 4 cut(s) 221, 402, 488, 586
BstSCI CCNGG 4 cut(s) 219, 400, 486, 584
BstSFI CTRYAG 1 cut(s) 558
BstSLI GKGCMC 1 cut(s) 211
BstUI CGCG 4 cut(s) 61, 63, 102, 343
BstV1I GCAGC 2 cut(s) 544, 572
BstV2I GAAGAC 1 cut(s) 2
BtgZI GCGATG 1 cut(s) 189
BtsCI GGATG 1 cut(s) 559
BtuMI TCGCGA 1 cut(s) 343
Cac8I GCNNGC 6 cut(s) 31, 35, 65, 104, 262, 693
CaiI CAGNNNCTG 1 cut(s) 661
CfoI GCGC 1 cut(s) 63
CsiI ACCWGGT 1 cut(s) 400
Csp6I GTAC 2 cut(s) 361, 481
CviAII CATG 3 cut(s) 91, 502, 775
CviQI GTAC 2 cut(s) 361, 481
DdeI CTNAG 3 cut(s) 357, 669, 797
DpnI GATC 2 cut(s) 381, 726
DpnII GATC 2 cut(s) 379, 724
EciI GGCGGA 1 cut(s) 236
Ecl136II GAGCTC 1 cut(s) 46
Eco130I CCWWGG 2 cut(s) 24, 280
Eco24I GRGCYC 1 cut(s) 48
Eco53kI GAGCTC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 46
EcoRII CCWGG 4 cut(s) 219, 400, 486, 584
EcoT14I CCWWGG 2 cut(s) 24, 280
EcoT22I ATGCAT 1 cut(s) 458
EcoT38I GRGCYC 1 cut(s) 48
ErhI CCWWGG 2 cut(s) 24, 280
Esp3I CGTCTC 1 cut(s) 405
FaeI CATG 3 cut(s) 94, 505, 778
FalI AAGNNNNNCTT 2 cut(s) 497, 529
FaqI GGGAC 1 cut(s) 298
FatI CATG 3 cut(s) 90, 501, 774
Fnu4HI GCNGC 2 cut(s) 558, 561
FokI GGATG 1 cut(s) 566
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 2 cut(s) 558, 561
FspBI CTAG 1 cut(s) 261
GlaI GCGC 1 cut(s) 62
GluI GCNGC 2 cut(s) 558, 561
GsuI CTGGAG 1 cut(s) 683
HhaI GCGC 1 cut(s) 63
Hin1II CATG 3 cut(s) 94, 505, 778
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HincII GTYRAC 1 cut(s) 597
HindII GTYRAC 1 cut(s) 597
HinfI GANTC 5 cut(s) 182, 286, 491, 665, 780
HphI GGTGA 3 cut(s) 191, 428, 673
Hpy166II GTNNAC 2 cut(s) 209, 597
Hpy188I TCNGA 6 cut(s) 187, 358, 396, 496, 553, 672
Hpy188III TCNNGA 2 cut(s) 16, 342
Hpy8I GTNNAC 2 cut(s) 209, 597
HpyAV CCTTC 2 cut(s) 260, 803
HpyCH4III ACNGT 2 cut(s) 416, 601
HpyCH4IV ACGT 3 cut(s) 242, 483, 756
HpyCH4V TGCA 6 cut(s) 209, 322, 440, 456, 560, 605
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 52, 554
HpyF3I CTNAG 3 cut(s) 357, 669, 797
HpySE526I ACGT 3 cut(s) 242, 483, 756
Hsp92II CATG 3 cut(s) 94, 505, 778
HspAI GCGC 1 cut(s) 61
Kzo9I GATC 2 cut(s) 379, 724
LmnI GCTCC 2 cut(s) 43, 574
Lsp1109I GCAGC 2 cut(s) 544, 572
LweI GCATC 2 cut(s) 544, 557
MabI ACCWGGT 1 cut(s) 400
MaeI CTAG 1 cut(s) 261
MaeII ACGT 3 cut(s) 242, 483, 756
MaeIII GTNAC 1 cut(s) 717
MalI GATC 2 cut(s) 381, 726
MboI GATC 2 cut(s) 379, 724
MboII GAAGA 4 cut(s) 67, 70, 140, 517
MhlI GDGCHC 3 cut(s) 48, 211, 764
MluCI AATT 9 cut(s) 131, 224, 316, 441, 535, 608, 622, 649, 673
MlyI GAGTC 2 cut(s) 280, 674
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 1 cut(s) 471
Mph1103I ATGCAT 1 cut(s) 458
MroXI GAANNNNTTC 2 cut(s) 456, 509
MseI TTAA 2 cut(s) 134, 446
MspR9I CCNGG 4 cut(s) 221, 402, 488, 586
Mva1269I GAATGC 2 cut(s) 456, 458
MvaI CCWGG 4 cut(s) 221, 402, 488, 586
MvnI CGCG 4 cut(s) 61, 63, 102, 343
MwoI GCNNNNNNNGC 3 cut(s) 43, 52, 554
NdeII GATC 2 cut(s) 379, 724
NheI GCTAGC 1 cut(s) 260
NlaIII CATG 3 cut(s) 94, 505, 778
NruI TCGCGA 1 cut(s) 343
NsiI ATGCAT 1 cut(s) 458
NspV TTCGAA 1 cut(s) 269
PctI GAATGC 2 cut(s) 456, 458
PdmI GAANNNNTTC 2 cut(s) 456, 509
PfeI GAWTC 3 cut(s) 182, 491, 780
PfoI TCCNGGA 1 cut(s) 486
PkrI GCNGC 2 cut(s) 559, 562
PleI GAGTC 2 cut(s) 280, 673
PpsI GAGTC 2 cut(s) 280, 673
Ppu21I YACGTR 1 cut(s) 757
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 4 cut(s) 219, 400, 486, 584
PspGI CCWGG 4 cut(s) 219, 400, 486, 584
PstI CTGCAG 1 cut(s) 562
PstNI CAGNNNCTG 1 cut(s) 661
RruI TCGCGA 1 cut(s) 343
RsaI GTAC 2 cut(s) 362, 482
RsaNI GTAC 2 cut(s) 361, 481
SacI GAGCTC 1 cut(s) 48
SaqAI TTAA 2 cut(s) 134, 446
SatI GCNGC 2 cut(s) 558, 561
Sau3AI GATC 2 cut(s) 379, 724
ScaI AGTACT 1 cut(s) 362
SchI GAGTC 2 cut(s) 280, 674
ScrFI CCNGG 4 cut(s) 221, 402, 488, 586
SduI GDGCHC 3 cut(s) 48, 211, 764
SexAI ACCWGGT 1 cut(s) 400
SfaNI GCATC 2 cut(s) 544, 557
SfcI CTRYAG 1 cut(s) 558
SfuI TTCGAA 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 9 cut(s) 131, 224, 316, 441, 535, 608, 622, 649, 673
SsiI CCGC 2 cut(s) 100, 247
SspI AATATT 1 cut(s) 376
SspMI CTAG 1 cut(s) 261
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 4 cut(s) 219, 400, 486, 584
StyI CCWWGG 2 cut(s) 24, 280
TaaI ACNGT 2 cut(s) 416, 601
TaiI ACGT 3 cut(s) 245, 486, 759
TaqI TCGA 2 cut(s) 269, 751
TasI AATT 9 cut(s) 131, 224, 316, 441, 535, 608, 622, 649, 673
TatI WGTACW 1 cut(s) 360
TfiI GAWTC 3 cut(s) 182, 491, 780
Tru1I TTAA 2 cut(s) 134, 446
Tru9I TTAA 2 cut(s) 134, 446
TseI GCWGC 2 cut(s) 557, 560
TspDTI ATGAA 3 cut(s) 17, 518, 803
VneI GTGCAC 1 cut(s) 207
XapI RAATTY 3 cut(s) 224, 316, 535
XmnI GAANNNNTTC 2 cut(s) 456, 509
XspI CTAG 1 cut(s) 261
ZrmI AGTACT 1 cut(s) 362
Zsp2I ATGCAT 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.