Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004058

Physical Location & Seq

Genomic Coordinates Reverse (-)

21075792 .. 21079373

Gene Structure 3582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G203000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGCGAAAAAGTTGACAATGAAGGGTCTTTTCAAGCCAAAGGCGCGAAGCCCATTGGAGCTTGTAAAGCACACGCATGAGCTTCTCATGTTTCTTGATCGGAACATGGATGCGCGCGAGCAAAAGCGCAAAGAAAAGATGGATGAACTGAGCAAAGCAATCTTGGAGATAAGAACAGTTTTATATGGTGATGAGGAATCAGAGCCAAATAAAGACTCTTGTGCACAACTTACTCAGGAGTTTTTCAGAGGGGACACATTCAGGCTTCTCATTGTTTGCCTTCCAAAGCTCAACTTGGGGGCTCGTAAAAACACCACTCATGTCATTGCAAATTTGCTAAGGCAACGAGTTCAGTCCCAATTGCTTGCTTTAGAGTACTTGGAAAAGAATATAGATCTTATGGACATTCTGATAAAGGGCTATGAAGACAGCGGTGATGTTGCTCTGTCATATGGTGCAATTTCAAGGGAATGCATTCGTCACCAGAATGTTGCAAGGTATGTCTTGGAATCAGACCACATGAAGAAGTTTTTTGATTATATACAAACTCCAAATTTCGACATAGCATCAGATGCTGCAGCTACTTTCAAGGAGCTCATGACAAGGCACAAATCAACTGTTGCTCAATTTCTTTCTAAAAATTATGAGTGGTTTTTCCAAGAGTACAATTCTCAGTTGCTTGAGTCTTCAAATTATATCACCAAACGCCAGGCCATCAAGCTGTTAGGAGATGTGTTGCTTGATCGCTCCAACTCTGCTGTGATGGTTCAATATGTCTGCTCTCTGGATAACATGAGAATCCTGATGAACCTTCTTAGGGATCCAAAGAAGACAATCAAGTTAGAGACCTTTCATGTGTTCAAGCTATTTGTTGCAAACCAAAATAAGCCTCCTGAGATTGTTAATGTGCTTATCACAAATAGGACCAAGCTTCTCCGTTTCTTTGATGACTTCACCATTGAGAAAGAGGATGAGCAGTTTGAAACAGCCAAAGCTGATGTTATTAATGAGATTTCTGTTCTTGAACCCAAACCCAAGATATCTTCAATCCTCAGCTTTAGAAACAATTGTGAGGTCAAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04150 ko04152 map04150 map04152

Pfam Domains

Protein Families

Mo25

Protein Analysis

362

Amino Acids

42.0

Weight (kDa)

8.55

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03410 AT4G17270 AT5G47540
fragaria_vesca	FvH4_3g00790 FvH4_6g41330
malus_domestica	MD05G1359100.v1.1 MD09G1120500.v1.1 MD10G1334800.v1.1 MD17G1111400.v1.1
prunus_persica	Prupe.3G203000_v2.0.a1 Prupe.4G008800_v2.0.a1
pyrus_communis	pycom05g32450 pycom10g28460
rosa_chinensis	RchiOBHm_Chr2g0156881 RchiOBHm_Chr5g0001041
rosa_laevigata	RLG00000020949 RLG00000030916
rosa_multiflora	Rmu_sc0000255.1_g000032 Rmu_sc0004189.1_g000003 Rmu_sc0011756.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075250 Rroxscaffold_2G00092630
rosa_rugosa	Rorug02G0456900 Rorug04G0389200
rosa_samantha	Rh2AG522500 Rh2BG535800 Rh2CG507400 Rh2DG544800 Rh5AG008400 Rh5CG009100 Rh5DG009300
rosa_wichuraiana	Rw2G043150 Rw5G000860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	46, 115, 117
AciI	CCGC	1 cut(s)	432
AclWI	GGATC	2 cut(s)	815, 828
AcsI	RAATTY	2 cut(s)	331, 553
AfaI	GTAC	2 cut(s)	377, 665
AfiI	CCNNNNNNNGG	1 cut(s)	817
AgsI	TTSAA	9 cut(s)	34, 465, 589, 690, 770, 862, 983, 1025, 1047
AjnI	CCWGG	1 cut(s)	708
Alw21I	GWGCWC	2 cut(s)	226, 597
Alw26I	GTCTC	1 cut(s)	839
Alw44I	GTGCAC	1 cut(s)	222
AlwI	GGATC	2 cut(s)	815, 828
AlwNI	CAGNNNCTG	1 cut(s)	575
AoxI	GGCC	1 cut(s)	711
ApaLI	GTGCAC	1 cut(s)	222
ApeKI	GCWGC	2 cut(s)	575, 578
ApoI	RAATTY	2 cut(s)	331, 553
AseI	ATTAAT	1 cut(s)	1005
Asp700I	GAANNNNTTC	1 cut(s)	474
AspLEI	GCGC	4 cut(s)	46, 115, 117, 129
AspS9I	GGNCC	1 cut(s)	924
AsuHPI	GGTGA	5 cut(s)	200, 446, 473, 691, 946
AvaII	GGWCC	1 cut(s)	924
BaeGI	GKGCMC	1 cut(s)	226
BamHI	GGATCC	1 cut(s)	820
BanII	GRGCYC	2 cut(s)	304, 597
BbsI	GAAGAC	3 cut(s)	432, 678, 836
Bbv12I	GWGCWC	2 cut(s)	226, 597
BbvCI	CCTCAGC	1 cut(s)	1052
BbvI	GCAGC	2 cut(s)	562, 590
BccI	CCATC	3 cut(s)	133, 722, 757
BciT130I	CCWGG	1 cut(s)	710
BcoDI	GTCTC	1 cut(s)	839
BfmI	CTRYAG	1 cut(s)	576
BglII	AGATCT	1 cut(s)	394
BisI	GCNGC	2 cut(s)	576, 579
BlsI	GCNGC	2 cut(s)	577, 580
BmcAI	AGTACT	1 cut(s)	377
Bme1390I	CCNGG	1 cut(s)	710
Bme18I	GGWCC	1 cut(s)	924
BmgT120I	GGNCC	1 cut(s)	924
BmiI	GGNNCC	1 cut(s)	822
BmrFI	CCNGG	1 cut(s)	710
BmsI	GCATC	3 cut(s)	100, 562, 575
BpiI	GAAGAC	3 cut(s)	432, 678, 836
Bpu10I	CCTNAGC	2 cut(s)	338, 1052
BpuEI	CTTGAG	1 cut(s)	701
BsaI	GGTCTC	1 cut(s)	839
Bsc4I	CCNNNNNNNGG	1 cut(s)	817
Bse3DI	GCAATG	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	710
BseGI	GGATG	3 cut(s)	115, 148, 976
BseLI	CCNNNNNNNGG	1 cut(s)	817
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	5 cut(s)	140, 248, 686, 885, 1066
BsePI	GCGCGC	1 cut(s)	113
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	2 cut(s)	562, 590
Bsh1236I	CGCG	3 cut(s)	46, 115, 117
BshFI	GGCC	1 cut(s)	713
BsiHKAI	GWGCWC	2 cut(s)	226, 597
BslFI	GGGAC	2 cut(s)	266, 340
BslI	CCNNNNNNNGG	1 cut(s)	817
BsmAI	GTCTC	1 cut(s)	839
BsmFI	GGGAC	2 cut(s)	266, 340
BsmI	GAATGC	2 cut(s)	474, 476
BsnI	GGCC	1 cut(s)	713
Bso31I	GGTCTC	1 cut(s)	839
Bsp1286I	GDGCHC	3 cut(s)	226, 304, 597
Bsp143I	GATC	4 cut(s)	97, 394, 742, 820
BspACI	CCGC	1 cut(s)	432
BspANI	GGCC	1 cut(s)	713
BspCNI	CTCAG	5 cut(s)	141, 247, 685, 886, 1065
BspFNI	CGCG	3 cut(s)	46, 115, 117
BspHI	TCATGA	1 cut(s)	597
BspLI	GGNNCC	1 cut(s)	822
BspMAI	CTGCAG	1 cut(s)	580
BspPI	GGATC	2 cut(s)	815, 828
BspTNI	GGTCTC	1 cut(s)	839
BsrDI	GCAATG	1 cut(s)	324
BssHII	GCGCGC	1 cut(s)	113
BssMI	GATC	4 cut(s)	97, 394, 742, 820
Bst2UI	CCWGG	1 cut(s)	710
Bst4CI	ACNGT	2 cut(s)	178, 619
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstC8I	GCNNGC	3 cut(s)	115, 119, 366
BstDEI	CTNAG	7 cut(s)	149, 234, 338, 672, 815, 894, 1052
BstF5I	GGATG	3 cut(s)	115, 148, 976
BstFNI	CGCG	3 cut(s)	46, 115, 117
BstHHI	GCGC	4 cut(s)	46, 115, 117, 129
BstKTI	GATC	4 cut(s)	100, 397, 745, 823
BstMAI	GTCTC	1 cut(s)	839
BstMBI	GATC	4 cut(s)	97, 394, 742, 820
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 67, 572
BstNI	CCWGG	1 cut(s)	710
BstSCI	CCNGG	1 cut(s)	708
BstSFI	CTRYAG	1 cut(s)	576
BstSLI	GKGCMC	1 cut(s)	226
BstUI	CGCG	3 cut(s)	46, 115, 117
BstV1I	GCAGC	2 cut(s)	562, 590
BstV2I	GAAGAC	3 cut(s)	432, 678, 836
BstX2I	RGATCY	2 cut(s)	394, 820
BstYI	RGATCY	2 cut(s)	394, 820
BsuRI	GGCC	1 cut(s)	713
BtsCI	GGATG	3 cut(s)	115, 148, 976
Cac8I	GCNNGC	3 cut(s)	115, 119, 366
CaiI	CAGNNNCTG	1 cut(s)	575
CciI	TCATGA	1 cut(s)	597
CfoI	GCGC	4 cut(s)	46, 115, 117, 129
Cfr13I	GGNCC	1 cut(s)	924
Csp6I	GTAC	2 cut(s)	376, 664
CviAII	CATG	8 cut(s)	77, 88, 106, 320, 520, 598, 793, 854
CviQI	GTAC	2 cut(s)	376, 664
DdeI	CTNAG	7 cut(s)	149, 234, 338, 672, 815, 894, 1052
DpnI	GATC	4 cut(s)	99, 396, 744, 822
DpnII	GATC	4 cut(s)	97, 394, 742, 820
Ecl136II	GAGCTC	1 cut(s)	595
Eco24I	GRGCYC	2 cut(s)	304, 597
Eco31I	GGTCTC	1 cut(s)	839
Eco32I	GATATC	1 cut(s)	1041
Eco47I	GGWCC	1 cut(s)	924
Eco53kI	GAGCTC	1 cut(s)	595
EcoICRI	GAGCTC	1 cut(s)	595
EcoRII	CCWGG	1 cut(s)	708
EcoRV	GATATC	1 cut(s)	1041
EcoT22I	ATGCAT	1 cut(s)	476
EcoT38I	GRGCYC	2 cut(s)	304, 597
FaeI	CATG	8 cut(s)	80, 91, 109, 323, 523, 601, 796, 857
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FaqI	GGGAC	2 cut(s)	266, 340
FatI	CATG	8 cut(s)	76, 87, 105, 319, 519, 597, 792, 853
FauNDI	CATATG	1 cut(s)	451
Fnu4HI	GCNGC	2 cut(s)	576, 579
FokI	GGATG	3 cut(s)	122, 155, 983
FriOI	GRGCYC	2 cut(s)	304, 597
Fsp4HI	GCNGC	2 cut(s)	576, 579
GlaI	GCGC	4 cut(s)	45, 114, 116, 128
GluI	GCNGC	2 cut(s)	576, 579
HaeIII	GGCC	1 cut(s)	713
HhaI	GCGC	4 cut(s)	46, 115, 117, 129
Hin1II	CATG	8 cut(s)	80, 91, 109, 323, 523, 601, 796, 857
Hin6I	GCGC	4 cut(s)	44, 113, 115, 127
HinP1I	GCGC	4 cut(s)	44, 113, 115, 127
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HindIII	AAGCTT	1 cut(s)	929
HinfI	GANTC	5 cut(s)	197, 215, 509, 683, 798
HphI	GGTGA	5 cut(s)	200, 446, 473, 691, 946
Hpy166II	GTNNAC	2 cut(s)	15, 224
Hpy188I	TCNGA	6 cut(s)	102, 202, 248, 411, 514, 571
Hpy188III	TCNNGA	7 cut(s)	95, 236, 598, 785, 802, 893, 1022
Hpy8I	GTNNAC	2 cut(s)	15, 224
HpyAV	CCTTC	3 cut(s)	16, 290, 821
HpyCH4III	ACNGT	2 cut(s)	178, 619
HpyCH4V	TGCA	7 cut(s)	224, 329, 458, 474, 494, 578, 875
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 67, 572
HpyF3I	CTNAG	7 cut(s)	149, 234, 338, 672, 815, 894, 1052
Hsp92II	CATG	8 cut(s)	80, 91, 109, 323, 523, 601, 796, 857
HspAI	GCGC	4 cut(s)	44, 113, 115, 127
Kzo9I	GATC	4 cut(s)	97, 394, 742, 820
LmnI	GCTCC	3 cut(s)	58, 592, 752
LpnPI	CCDG	8 cut(s)	221, 247, 497, 695, 722, 770, 815, 906
Lsp1109I	GCAGC	2 cut(s)	562, 590
LweI	GCATC	3 cut(s)	100, 562, 575
MaeIII	GTNAC	1 cut(s)	479
MalI	GATC	4 cut(s)	99, 396, 744, 822
MboI	GATC	4 cut(s)	97, 394, 742, 820
MboII	GAAGA	5 cut(s)	437, 535, 678, 841, 1035
MfeI	CAATTG	2 cut(s)	359, 1066
MflI	RGATCY	2 cut(s)	394, 820
MhlI	GDGCHC	3 cut(s)	226, 304, 597
MluCI	AATT	9 cut(s)	331, 359, 459, 553, 626, 640, 667, 691, 1066
MlyI	GAGTC	2 cut(s)	209, 692
MmeI	TCCRAC	1 cut(s)	774
MnlI	CCTC	6 cut(s)	187, 242, 900, 961, 1061, 1066
Mph1103I	ATGCAT	1 cut(s)	476
MroXI	GAANNNNTTC	1 cut(s)	474
MseI	TTAA	3 cut(s)	903, 1005, 1084
MslI	CAYNNNNRTG	2 cut(s)	75, 486
MspA1I	CMGCKG	1 cut(s)	432
MspR9I	CCNGG	1 cut(s)	710
MunI	CAATTG	2 cut(s)	359, 1066
Mva1269I	GAATGC	2 cut(s)	474, 476
MvaI	CCWGG	1 cut(s)	710
MvnI	CGCG	3 cut(s)	46, 115, 117
MwoI	GCNNNNNNNGC	3 cut(s)	43, 67, 572
NdeI	CATATG	1 cut(s)	451
NdeII	GATC	4 cut(s)	97, 394, 742, 820
NlaIII	CATG	8 cut(s)	80, 91, 109, 323, 523, 601, 796, 857
NlaIV	GGNNCC	1 cut(s)	822
NmuCI	GTSAC	1 cut(s)	479
NsiI	ATGCAT	1 cut(s)	476
PagI	TCATGA	1 cut(s)	597
PauI	GCGCGC	1 cut(s)	113
PctI	GAATGC	2 cut(s)	474, 476
PdmI	GAANNNNTTC	1 cut(s)	474
PfeI	GAWTC	3 cut(s)	197, 509, 798
PkrI	GCNGC	2 cut(s)	577, 580
PleI	GAGTC	2 cut(s)	209, 691
PpsI	GAGTC	2 cut(s)	209, 691
PshBI	ATTAAT	1 cut(s)	1005
Psp124BI	GAGCTC	1 cut(s)	597
Psp6I	CCWGG	1 cut(s)	708
PspGI	CCWGG	1 cut(s)	708
PspN4I	GGNNCC	1 cut(s)	822
PspPI	GGNCC	1 cut(s)	924
PstI	CTGCAG	1 cut(s)	580
PstNI	CAGNNNCTG	1 cut(s)	575
PsuI	RGATCY	2 cut(s)	394, 820
PteI	GCGCGC	1 cut(s)	113
RsaI	GTAC	2 cut(s)	377, 665
RsaNI	GTAC	2 cut(s)	376, 664
RseI	CAYNNNNRTG	2 cut(s)	75, 486
SacI	GAGCTC	1 cut(s)	597
SaqAI	TTAA	3 cut(s)	903, 1005, 1084
SatI	GCNGC	2 cut(s)	576, 579
Sau3AI	GATC	4 cut(s)	97, 394, 742, 820
Sau96I	GGNCC	1 cut(s)	924
ScaI	AGTACT	1 cut(s)	377
SchI	GAGTC	2 cut(s)	209, 692
ScrFI	CCNGG	1 cut(s)	710
SduI	GDGCHC	3 cut(s)	226, 304, 597
SfaNI	GCATC	3 cut(s)	100, 562, 575
SfcI	CTRYAG	1 cut(s)	576
SinI	GGWCC	1 cut(s)	924
SmiMI	CAYNNNNRTG	2 cut(s)	75, 486
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
Sse9I	AATT	9 cut(s)	331, 359, 459, 553, 626, 640, 667, 691, 1066
SsiI	CCGC	1 cut(s)	432
SstI	GAGCTC	1 cut(s)	597
StyD4I	CCNGG	1 cut(s)	708
TaaI	ACNGT	2 cut(s)	178, 619
TaqI	TCGA	1 cut(s)	558
TasI	AATT	9 cut(s)	331, 359, 459, 553, 626, 640, 667, 691, 1066
TatI	WGTACW	2 cut(s)	375, 663
TfiI	GAWTC	3 cut(s)	197, 509, 798
Tru1I	TTAA	3 cut(s)	903, 1005, 1084
Tru9I	TTAA	3 cut(s)	903, 1005, 1084
TseFI	GTSAC	1 cut(s)	479
TseI	GCWGC	2 cut(s)	575, 578
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	6 cut(s)	35, 159, 438, 536, 821, 842
TspGWI	ACGGA	1 cut(s)	926
VneI	GTGCAC	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	924
VspI	ATTAAT	1 cut(s)	1005
XapI	RAATTY	2 cut(s)	331, 553
XmnI	GAANNNNTTC	1 cut(s)	474
ZrmI	AGTACT	1 cut(s)	377
Zsp2I	ATGCAT	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.