Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004869

Physical Location & Seq

Genomic Coordinates Reverse (-)

7655108 .. 7656808

Gene Structure 1701 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1092200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCACTGTTCGGGTGGCGAACTCGACTCCGATGGTGGATTTGGAGTCCAAGCAGAACTCATTCCTGGTAAACCTAGAGAGAATGTTAGATTTGCCCACACCAGAGTCACCGATCAACACGATCTTGAACAGGTAGTCGTACTCGTGGTCTACTCTACTCGCCATGCCGCCGTCTCCCCTCTCCGATCTCCACAACCTACACATACACACAAAAATTCGAACCCATCAAAAATCACACAAATCTCTCTTTCTCTGCAACCTATACATACACAAACAGTTGTATCTATAGATCTCGCTTACCCGGAGGCGAATCGACAGAGGAGAGAACGCGATCGGAGAGTTCGATCGGAGGAACCGAAGGAATTGGGGCGGAGAGCACGGTGGGGGGTTTTGGGGAAGGAGAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.36

Weight (kDa)

9.79

Isoelectric Point (pI)

62.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004869)

Species	Orthologous Gene IDs
malus_domestica	MD11G1092200.v1.1 MD14G1207400.v1.1
pyrus_communis	pycom04g09480
rosa_laevigata	RLG00000002647 RLG00000003273 RLG00000004832 RLG00000020604 RLG00000023106 RLG00000025072 RLG00000032712 RLG00000036050
rosa_multiflora	Rmu_sc0008535.1_g000001
rosa_rugosa	Rorug03G0293800
rosa_samantha	Rh1AG358000 Rh1AG401600 Rh1BG223000 Rh1DG249900 Rh2CG166900 Rh2CG363400 Rh2DG386200 Rh3AG118400 Rh3BG123400 Rh3CG125100 Rh4BG086300 Rh5CG386900 Rh5CG408800 Rh5DG398800 Rh7BG143300 Rh7BG206700 Rh7CG109800 Rh7DG395600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	1 cut(s)	330
AciI	CCGC	2 cut(s)	168, 370
AcsI	RAATTY	1 cut(s)	214
AfaI	GTAC	1 cut(s)	141
AgsI	TTSAA	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	64
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	214
Asp700I	GAANNNNTTC	1 cut(s)	60
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	100
AsuII	TTCGAA	1 cut(s)	218
BaeI	ACNNNNGTAYC	2 cut(s)	264, 297
BauI	CACGAG	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	379
BccI	CCATC	2 cut(s)	26, 232
BceAI	ACGGC	1 cut(s)	155
BciT130I	CCWGG	1 cut(s)	66
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	285
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	2 cut(s)	66, 302
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	2 cut(s)	66, 302
Bpu14I	TTCGAA	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	302
BsaXI	ACNNNNNCTCC	1 cut(s)	392
BseBI	CCWGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	334
Bsh1236I	CGCG	1 cut(s)	330
Bsh1285I	CGRYCG	2 cut(s)	334, 347
BsiEI	CGRYCG	2 cut(s)	334, 347
BsiHKAI	GWGCWC	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	302
BsmAI	GTCTC	1 cut(s)	178
BsmBI	CGTCTC	1 cut(s)	178
Bsp119I	TTCGAA	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp143I	GATC	6 cut(s)	112, 121, 185, 289, 331, 344
BspACI	CCGC	2 cut(s)	168, 370
BspFNI	CGCG	1 cut(s)	330
BspLI	GGNNCC	1 cut(s)	354
BspT104I	TTCGAA	1 cut(s)	218
BssMI	GATC	6 cut(s)	112, 121, 185, 289, 331, 344
BssSI	CACGAG	1 cut(s)	143
Bst2BI	CACGAG	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	3 cut(s)	8, 277, 381
BstBI	TTCGAA	1 cut(s)	218
BstFNI	CGCG	1 cut(s)	330
BstKTI	GATC	6 cut(s)	115, 124, 188, 292, 334, 347
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	6 cut(s)	112, 121, 185, 289, 331, 344
BstMCI	CGRYCG	2 cut(s)	334, 347
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	2 cut(s)	64, 300
BstSFI	CTRYAG	1 cut(s)	285
BstUI	CGCG	1 cut(s)	330
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	140
CviAII	CATG	1 cut(s)	164
CviQI	GTAC	1 cut(s)	140
DpnI	GATC	6 cut(s)	114, 123, 187, 291, 333, 346
DpnII	GATC	6 cut(s)	112, 121, 185, 289, 331, 344
EciI	GGCGGA	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	64
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	1 cut(s)	167
FaiI	YATR	5 cut(s)	165, 204, 263, 267, 287
FatI	CATG	1 cut(s)	163
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	1 cut(s)	168
HapII	CCGG	1 cut(s)	302
Hin1II	CATG	1 cut(s)	167
HinfI	GANTC	4 cut(s)	26, 45, 105, 310
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	2 cut(s)	71, 151
Hpy188I	TCNGA	4 cut(s)	31, 185, 336, 349
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	2 cut(s)	71, 151
HpyAV	CCTTC	2 cut(s)	352, 391
HpyCH4III	ACNGT	3 cut(s)	8, 277, 381
HpyCH4V	TGCA	2 cut(s)	4, 256
Hsp92II	CATG	1 cut(s)	167
Kzo9I	GATC	6 cut(s)	112, 121, 185, 289, 331, 344
LpnPI	CCDG	5 cut(s)	51, 78, 115, 116, 315
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	6 cut(s)	114, 123, 187, 291, 333, 346
MboI	GATC	6 cut(s)	112, 121, 185, 289, 331, 344
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	2 cut(s)	214, 362
MlyI	GAGTC	3 cut(s)	20, 54, 114
MnlI	CCTC	4 cut(s)	189, 298, 312, 343
MroXI	GAANNNNTTC	1 cut(s)	60
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	2 cut(s)	66, 302
MvaI	CCWGG	1 cut(s)	66
MvnI	CGCG	1 cut(s)	330
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	6 cut(s)	112, 121, 185, 289, 331, 344
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	1 cut(s)	106
NspV	TTCGAA	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	2 cut(s)	340, 353
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	169
Ple19I	CGATCG	2 cut(s)	334, 347
PleI	GAGTC	3 cut(s)	20, 53, 113
PpsI	GAGTC	3 cut(s)	20, 53, 113
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	289
PvuI	CGATCG	2 cut(s)	334, 347
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	6 cut(s)	112, 121, 185, 289, 331, 344
SchI	GAGTC	3 cut(s)	20, 54, 114
ScrFI	CCNGG	2 cut(s)	66, 302
SduI	GDGCHC	1 cut(s)	379
SetI	ASST	4 cut(s)	76, 135, 199, 262
SfcI	CTRYAG	1 cut(s)	285
SfuI	TTCGAA	1 cut(s)	218
Sse9I	AATT	2 cut(s)	214, 362
SsiI	CCGC	2 cut(s)	168, 370
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	64, 300
TaaI	ACNGT	3 cut(s)	8, 277, 381
TaqI	TCGA	4 cut(s)	24, 218, 313, 343
TasI	AATT	2 cut(s)	214, 362
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	106
XapI	RAATTY	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	150
XmnI	GAANNNNTTC	1 cut(s)	60
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.