Rh5CG386900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004869
Physical Location & Seq
Forward (+)
50993015 .. 50993347
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG386900.1

Sequence Viewer

Length: 333 bp
ATGGAATTGAAAGGCTTATCACATTTCTTGGCCGGCGGTGTCCCAAATCTGGGCCTTGACGATCTAATCATCGACGTGGATGCTCCGAGTGGCAAACTCGACGCCGATGGTAGACTTAGACTCGAGGTTGGACTCGTTGCGCAAGAACCTGGACAACAAATCGGATTTGCCGATGCCGGAATTGCCGATCAAGACGACCTTGAAGTGGTAGTCTTCGTCCGACCTGTAGGCCATGTCGAAGAGCCGGAGAGACTTTCCGGTTGGAGATTTTCGATTGGAGATGAAGAGGCTGTGGGCCTTGTCATCGTCGTAGGAGAATCAGTGCTCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.61

Weight (kDa)

4.12

Isoelectric Point (pI)

27.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 141
AccI GTMKAC 1 cut(s) 112
AciI CCGC 1 cut(s) 36
AcoI YGGCCR 1 cut(s) 30
AcyI GRCGYC 1 cut(s) 102
AfiI CCNNNNNNNGG 3 cut(s) 49, 50, 205
AgsI TTSAA 2 cut(s) 10, 203
AjiI CACGTC 1 cut(s) 76
AjnI CCWGG 1 cut(s) 148
Alw21I GWGCWC 1 cut(s) 327
Alw26I GTCTC 1 cut(s) 244
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 4 cut(s) 30, 52, 229, 295
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 2 cut(s) 52, 295
AvaI CYCGRG 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 327
BccI CCATC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BciT130I CCWGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 244
BfmI CTRYAG 1 cut(s) 225
Bme1390I CCNGG 1 cut(s) 150
BmeT110I CYCGRG 1 cut(s) 122
BmgBI CACGTC 1 cut(s) 76
BmgT120I GGNCC 2 cut(s) 52, 295
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 2 cut(s) 70, 163
BpiI GAAGAC 1 cut(s) 205
BsaHI GRCGYC 1 cut(s) 102
BsaWI WCCGGW 1 cut(s) 257
BsaXI ACNNNNNCTCC 1 cut(s) 306
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 50, 205
Bse118I RCCGGY 1 cut(s) 32
BseBI CCWGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 3 cut(s) 49, 50, 205
BshFI GGCC 4 cut(s) 32, 54, 231, 297
BsiHKAI GWGCWC 1 cut(s) 327
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 4 cut(s) 33, 177, 245, 258
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 3 cut(s) 49, 50, 205
BsmAI GTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 4 cut(s) 32, 54, 231, 297
BsoBI CYCGRG 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 327
Bsp143I GATC 2 cut(s) 61, 187
BspACI CCGC 1 cut(s) 36
BspANI GGCC 4 cut(s) 32, 54, 231, 297
BspQI GCTCTTC 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 32
BssAI RCCGGY 1 cut(s) 32
BssMI GATC 2 cut(s) 61, 187
BssNI GRCGYC 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 150
Bst6I CTCTTC 2 cut(s) 234, 279
BstACI GRCGYC 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 85
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 2 cut(s) 64, 190
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 2 cut(s) 61, 187
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 1 cut(s) 225
BstV2I GAAGAC 1 cut(s) 205
BsuRI GGCC 4 cut(s) 32, 54, 231, 297
BtrI CACGTC 1 cut(s) 76
BtsCI GGATG 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 1 cut(s) 34
CfoI GCGC 1 cut(s) 142
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 2 cut(s) 52, 295
CseI GACGC 1 cut(s) 110
CviAII CATG 1 cut(s) 233
CviJI RGCY 7 cut(s) 15, 32, 54, 231, 244, 290, 297
CviKI_1 RGCY 7 cut(s) 15, 32, 54, 231, 244, 290, 297
DdeI CTNAG 1 cut(s) 116
DpnI GATC 2 cut(s) 63, 189
DpnII GATC 2 cut(s) 61, 187
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 2 cut(s) 234, 279
EarI CTCTTC 2 cut(s) 234, 279
Eco88I CYCGRG 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 148
FaeI CATG 1 cut(s) 236
FaiI YATR 1 cut(s) 234
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FaqI GGGAC 1 cut(s) 26
FatI CATG 1 cut(s) 232
FblI GTMKAC 1 cut(s) 112
FokI GGATG 1 cut(s) 92
FspI TGCGCA 1 cut(s) 141
GlaI GCGC 1 cut(s) 141
HaeIII GGCC 4 cut(s) 32, 54, 231, 297
HapII CCGG 4 cut(s) 33, 177, 245, 258
HgaI GACGC 1 cut(s) 110
HhaI GCGC 1 cut(s) 142
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 1 cut(s) 236
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HinfI GANTC 3 cut(s) 120, 132, 317
HpaII CCGG 4 cut(s) 33, 177, 245, 258
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 3 cut(s) 87, 164, 221
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 113
Hpy99I CGWCG 3 cut(s) 77, 104, 311
HpyCH4IV ACGT 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 1 cut(s) 236
HspAI GCGC 1 cut(s) 140
KroI GCCGGC 1 cut(s) 32
KroNI GCCGGC 1 cut(s) 34
Kzo9I GATC 2 cut(s) 61, 187
LguI GCTCTTC 1 cut(s) 234
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 8 cut(s) 35, 46, 135, 162, 190, 237, 258, 271
LweI GCATC 2 cut(s) 70, 163
MaeII ACGT 1 cut(s) 75
MalI GATC 2 cut(s) 63, 189
MboI GATC 2 cut(s) 61, 187
MboII GAAGA 3 cut(s) 205, 251, 296
MhlI GDGCHC 1 cut(s) 327
MluCI AATT 2 cut(s) 5, 180
MlyI GAGTC 2 cut(s) 114, 126
MmeI TCCRAC 3 cut(s) 109, 242, 244
MnlI CCTC 2 cut(s) 118, 280
MroNI GCCGGC 1 cut(s) 32
MslI CAYNNNNRTG 1 cut(s) 74
MspI CCGG 4 cut(s) 33, 177, 245, 258
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 182
NaeI GCCGGC 1 cut(s) 34
NdeII GATC 2 cut(s) 61, 187
NgoMIV GCCGGC 1 cut(s) 32
NlaIII CATG 1 cut(s) 236
NsbI TGCGCA 1 cut(s) 141
PaeR7I CTCGAG 1 cut(s) 122
PciSI GCTCTTC 1 cut(s) 234
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PdiI GCCGGC 1 cut(s) 34
PfeI GAWTC 1 cut(s) 317
PleI GAGTC 2 cut(s) 114, 126
PpsI GAGTC 2 cut(s) 114, 126
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspPI GGNCC 2 cut(s) 52, 295
PspXI VCTCGAGB 1 cut(s) 122
RseI CAYNNNNRTG 1 cut(s) 74
SapI GCTCTTC 1 cut(s) 234
Sau3AI GATC 2 cut(s) 61, 187
Sau96I GGNCC 2 cut(s) 52, 295
SchI GAGTC 2 cut(s) 114, 126
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 1 cut(s) 327
SetI ASST 5 cut(s) 78, 129, 151, 201, 226
SfaNI GCATC 2 cut(s) 70, 163
SfcI CTRYAG 1 cut(s) 225
Sfr274I CTCGAG 1 cut(s) 122
SlaI CTCGAG 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 2 cut(s) 5, 180
SsiI CCGC 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 148
TaiI ACGT 1 cut(s) 78
TaqI TCGA 5 cut(s) 72, 99, 123, 237, 272
TasI AATT 2 cut(s) 5, 180
TfiI GAWTC 1 cut(s) 317
TscAI CASTG 1 cut(s) 327
TspDTI ATGAA 1 cut(s) 297
TspRI CASTG 1 cut(s) 327
XhoI CTCGAG 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.