RLG00000023106

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0004869
Physical Location & Seq
Forward (+)
18168300 .. 18171583
3284 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023106

Sequence Viewer

Length: 336 bp
ATGGAATTGAAAGGCTTGTCACCTTTCTTGGCCGACTGTGTCCCAAATCTTGGCCTTGACGATCTTATCATCGACGTGGATGCTCCGAGTGGCGAACTCGATGCCGATGGTGGATATAGACTCGAGGTTGAACTCGTTGCGCATGAACCTGGACAAGAGGTTGGATTTGCCGATGCCGGAATCACCGATGAAGACGACCTTGAAGAGGTACTGCTTGGCAGTGAATGTGCTAAGATTTTGACCTACCTTGTGATATCGACATCTTCATCAGCAGCGACTCAGGTTGAAGATTGGGAGTCGAATTGGGGCAAAGACAAGTTCCATGATATGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

11.93

Weight (kDa)

4.05

Isoelectric Point (pI)

28.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 141
AccB7I CCANNNNNTGG 2 cut(s) 50, 328
AcoI YGGCCR 1 cut(s) 30
AfaI GTAC 1 cut(s) 210
AfiI CCNNNNNNNGG 3 cut(s) 50, 205, 328
AgsI TTSAA 4 cut(s) 10, 131, 203, 287
AjiI CACGTC 1 cut(s) 76
AjnI CCWGG 1 cut(s) 148
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 2 cut(s) 30, 52
ApeKI GCWGC 1 cut(s) 272
AspLEI GCGC 1 cut(s) 142
AsuHPI GGTGA 2 cut(s) 12, 175
AvaI CYCGRG 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 284
BccI CCATC 1 cut(s) 101
BcgI CGANNNNNNTGC 4 cut(s) 62, 83, 96, 117
BciT130I CCWGG 1 cut(s) 150
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
Bme1390I CCNGG 1 cut(s) 150
BmeT110I CYCGRG 1 cut(s) 122
BmgBI CACGTC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 3 cut(s) 70, 91, 163
BpiI GAAGAC 1 cut(s) 198
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 205, 328
BseBI CCWGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 3 cut(s) 50, 205, 328
BseMII CTCAG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 284
BshFI GGCC 2 cut(s) 32, 54
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 1 cut(s) 177
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 3 cut(s) 50, 205, 328
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 2 cut(s) 32, 54
BsoBI CYCGRG 1 cut(s) 122
Bsp143I GATC 1 cut(s) 61
BspANI GGCC 2 cut(s) 32, 54
BspCNI CTCAG 1 cut(s) 292
BssMI GATC 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 38
Bst6I CTCTTC 1 cut(s) 198
BstDEI CTNAG 2 cut(s) 231, 279
BstENI CCTNNNNNAGG 1 cut(s) 203
BstF5I GGATG 1 cut(s) 85
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 284
BstV2I GAAGAC 1 cut(s) 198
BsuRI GGCC 2 cut(s) 32, 54
BtrI CACGTC 1 cut(s) 76
BtsCI GGATG 1 cut(s) 85
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 226
CfoI GCGC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 209
CviAII CATG 3 cut(s) 143, 323, 333
CviJI RGCY 3 cut(s) 15, 32, 54
CviKI_1 RGCY 3 cut(s) 15, 32, 54
CviQI GTAC 1 cut(s) 209
DdeI CTNAG 2 cut(s) 231, 279
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco32I GATATC 1 cut(s) 255
Eco88I CYCGRG 1 cut(s) 122
EcoNI CCTNNNNNAGG 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 148
EcoRV GATATC 1 cut(s) 255
FaeI CATG 3 cut(s) 146, 326, 336
FaiI YATR 5 cut(s) 117, 144, 324, 329, 334
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FaqI GGGAC 1 cut(s) 26
FatI CATG 3 cut(s) 142, 322, 332
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 1 cut(s) 273
FspI TGCGCA 1 cut(s) 141
GlaI GCGC 1 cut(s) 141
GluI GCNGC 1 cut(s) 273
HaeIII GGCC 2 cut(s) 32, 54
HapII CCGG 1 cut(s) 177
HhaI GCGC 1 cut(s) 142
Hin1II CATG 3 cut(s) 146, 326, 336
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HinfI GANTC 4 cut(s) 120, 180, 277, 296
HpaII CCGG 1 cut(s) 177
HphI GGTGA 2 cut(s) 12, 175
Hpy188I TCNGA 1 cut(s) 87
Hpy99I CGWCG 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4IV ACGT 1 cut(s) 75
HpyF3I CTNAG 2 cut(s) 231, 279
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 3 cut(s) 146, 326, 336
HspAI GCGC 1 cut(s) 140
Kzo9I GATC 1 cut(s) 61
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 4 cut(s) 135, 162, 190, 266
Lsp1109I GCAGC 1 cut(s) 284
LweI GCATC 3 cut(s) 70, 91, 163
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 18
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 4 cut(s) 203, 215, 255, 299
MluCI AATT 2 cut(s) 5, 301
MlyI GAGTC 3 cut(s) 114, 271, 305
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 3 cut(s) 118, 151, 199
MslI CAYNNNNRTG 1 cut(s) 74
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
NdeII GATC 1 cut(s) 61
NlaIII CATG 3 cut(s) 146, 326, 336
NmuCI GTSAC 1 cut(s) 18
NsbI TGCGCA 1 cut(s) 141
PaeR7I CTCGAG 1 cut(s) 122
PfeI GAWTC 1 cut(s) 180
PflFI GACNNNGTC 1 cut(s) 38
PflMI CCANNNNNTGG 2 cut(s) 50, 328
PkrI GCNGC 1 cut(s) 274
PleI GAGTC 3 cut(s) 114, 271, 304
PpsI GAGTC 3 cut(s) 114, 271, 304
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspXI VCTCGAGB 1 cut(s) 122
PsyI GACNNNGTC 1 cut(s) 38
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
RseI CAYNNNNRTG 1 cut(s) 74
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 1 cut(s) 61
SchI GAGTC 3 cut(s) 114, 271, 305
ScrFI CCNGG 1 cut(s) 150
SfaNI GCATC 3 cut(s) 70, 91, 163
Sfr274I CTCGAG 1 cut(s) 122
SlaI CTCGAG 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 2 cut(s) 5, 301
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 38
TaiI ACGT 1 cut(s) 78
TaqI TCGA 5 cut(s) 72, 99, 123, 257, 299
TasI AATT 2 cut(s) 5, 301
TfiI GAWTC 1 cut(s) 180
TscAI CASTG 1 cut(s) 226
TseFI GTSAC 1 cut(s) 18
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 18
TspDTI ATGAA 3 cut(s) 159, 204, 255
TspRI CASTG 1 cut(s) 226
Tth111I GACNNNGTC 1 cut(s) 38
Van91I CCANNNNNTGG 2 cut(s) 50, 328
XagI CCTNNNNNAGG 1 cut(s) 203
XhoI CTCGAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.