Rh1AG358000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004869
Physical Location & Seq
Reverse (-)
59296736 .. 59296957
222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG358000.1

Sequence Viewer

Length: 222 bp
ATGGAATTGAAAAGCTTATCACATTTCTTGGCTGACGGTGTCCCAAATCTGGGCCTTGACGATCTAATCATCGACGTGGATGCTCCGGGTGGCAAGCTCGACACCGATGGTGGACTTAGACTCGAGGTTGAACTCATTGCGCATGAACCTGGACAACAAATAGGATTTGCCGATACCGGAATGGCCAATCAAGAAGACCTTGAAGTGGTAGTCGTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

7.71

Weight (kDa)

4.05

Isoelectric Point (pI)

16.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 141
AcoI YGGCCR 1 cut(s) 183
AfiI CCNNNNNNNGG 3 cut(s) 49, 50, 205
AgsI TTSAA 3 cut(s) 10, 131, 203
AjiI CACGTC 1 cut(s) 76
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 2 cut(s) 15, 97
AluI AGCT 2 cut(s) 15, 97
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 2 cut(s) 52, 183
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 1 cut(s) 52
AsuC2I CCSGG 1 cut(s) 87
AvaI CYCGRG 1 cut(s) 122
BalI TGGCCA 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 201
BccI CCATC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BciT130I CCWGG 1 cut(s) 150
BcnI CCSGG 1 cut(s) 87
Bme1390I CCNGG 2 cut(s) 87, 150
BmeT110I CYCGRG 1 cut(s) 122
BmgBI CACGTC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 52
BmrFI CCNGG 2 cut(s) 87, 150
BmsI GCATC 1 cut(s) 70
BpiI GAAGAC 1 cut(s) 201
BpuMI CCSGG 1 cut(s) 87
BsaWI WCCGGW 1 cut(s) 176
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 50, 205
Bse3DI GCAATG 1 cut(s) 135
BseBI CCWGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 3 cut(s) 49, 50, 205
BseMI GCAATG 1 cut(s) 135
BshFI GGCC 2 cut(s) 54, 185
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 2 cut(s) 86, 177
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 3 cut(s) 49, 50, 205
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 2 cut(s) 54, 185
BsoBI CYCGRG 1 cut(s) 122
Bsp143I GATC 1 cut(s) 61
BspANI GGCC 2 cut(s) 54, 185
BsrDI GCAATG 1 cut(s) 135
BssMI GATC 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 85
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 2 cut(s) 85, 148
BstV2I GAAGAC 1 cut(s) 201
BsuRI GGCC 2 cut(s) 54, 185
BtrI CACGTC 1 cut(s) 76
BtsCI GGATG 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 95
CfoI GCGC 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 52
CviAII CATG 1 cut(s) 143
CviJI RGCY 5 cut(s) 15, 32, 54, 97, 185
CviKI_1 RGCY 5 cut(s) 15, 32, 54, 97, 185
DdeI CTNAG 1 cut(s) 116
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 148
FaeI CATG 1 cut(s) 146
FaiI YATR 1 cut(s) 144
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FaqI GGGAC 1 cut(s) 26
FatI CATG 1 cut(s) 142
FokI GGATG 1 cut(s) 92
FspI TGCGCA 1 cut(s) 141
GlaI GCGC 1 cut(s) 141
HaeIII GGCC 2 cut(s) 54, 185
HapII CCGG 2 cut(s) 86, 177
HhaI GCGC 1 cut(s) 142
Hin1II CATG 1 cut(s) 146
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 1 cut(s) 120
HpaII CCGG 2 cut(s) 86, 177
Hpy166II GTNNAC 1 cut(s) 113
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 113
Hpy99I CGWCG 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4IV ACGT 1 cut(s) 75
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 1 cut(s) 146
HspAI GCGC 1 cut(s) 140
Kzo9I GATC 1 cut(s) 61
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 5 cut(s) 35, 99, 135, 162, 190
LweI GCATC 1 cut(s) 70
MaeII ACGT 1 cut(s) 75
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 1 cut(s) 206
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 185
MlyI GAGTC 1 cut(s) 114
MnlI CCTC 1 cut(s) 118
Mox20I TGGCCA 1 cut(s) 185
MscI TGGCCA 1 cut(s) 185
MslI CAYNNNNRTG 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 185
MspI CCGG 2 cut(s) 86, 177
MspR9I CCNGG 2 cut(s) 87, 150
MvaI CCWGG 1 cut(s) 150
NciI CCSGG 1 cut(s) 87
NdeII GATC 1 cut(s) 61
NlaIII CATG 1 cut(s) 146
NsbI TGCGCA 1 cut(s) 141
PaeR7I CTCGAG 1 cut(s) 122
PflFI GACNNNGTC 1 cut(s) 38
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspPI GGNCC 1 cut(s) 52
PspXI VCTCGAGB 1 cut(s) 122
PsyI GACNNNGTC 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 74
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 2 cut(s) 87, 150
SetI ASST 6 cut(s) 17, 78, 99, 129, 151, 201
SfaNI GCATC 1 cut(s) 70
Sfr274I CTCGAG 1 cut(s) 122
SlaI CTCGAG 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 1 cut(s) 5
StyD4I CCNGG 2 cut(s) 85, 148
TaaI ACNGT 1 cut(s) 38
TaiI ACGT 1 cut(s) 78
TaqI TCGA 3 cut(s) 72, 99, 123
TasI AATT 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 159
Tth111I GACNNNGTC 1 cut(s) 38
XhoI CTCGAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.