Rh7BG143300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004869
Physical Location & Seq
Reverse (-)
10606178 .. 10606447
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG143300.1

Sequence Viewer

Length: 270 bp
ATGGAATTGAAAGGCTTATCACATTTCTTGGCCAGCGGTGTCCCAAATCTGGGCCTTGACGATCTAATCATTGACGTGAATGCTCCGGGTGGCAAACTCGACACCGATGGTGGACTTAGACTCAAGGTTGAACTCATTGCGCATGAACCTGGACAACAAATCAGATTTGCCGAAGTCGGAATGGCCGATCAAGACGACCTTGAAGTGGTAGTCGTTGTCCGACCTGTAGACCATGTCGAAAAGCCGGAGAGACTTTCCGGTTGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.69

Weight (kDa)

4.71

Isoelectric Point (pI)

20.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 141
AccI GTMKAC 1 cut(s) 228
AciI CCGC 1 cut(s) 36
AcoI YGGCCR 2 cut(s) 30, 183
AfiI CCNNNNNNNGG 3 cut(s) 49, 50, 205
AgsI TTSAA 3 cut(s) 10, 131, 203
AjiI CACGTC 1 cut(s) 76
AjnI CCWGG 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 244
AoxI GGCC 3 cut(s) 30, 52, 183
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 1 cut(s) 52
AsuC2I CCSGG 1 cut(s) 87
BalI TGGCCA 1 cut(s) 32
BccI CCATC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 150
BcnI CCSGG 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 244
BfmI CTRYAG 1 cut(s) 225
Bme1390I CCNGG 2 cut(s) 87, 150
BmgBI CACGTC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 52
BmrFI CCNGG 2 cut(s) 87, 150
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 87
BsaWI WCCGGW 1 cut(s) 257
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 50, 205
Bse3DI GCAATG 1 cut(s) 135
BseBI CCWGG 1 cut(s) 150
BseLI CCNNNNNNNGG 3 cut(s) 49, 50, 205
BseMI GCAATG 1 cut(s) 135
BshFI GGCC 3 cut(s) 32, 54, 185
BsiSI CCGG 3 cut(s) 86, 245, 258
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 3 cut(s) 49, 50, 205
BsmAI GTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 26
BsmI GAATGC 1 cut(s) 85
BsnI GGCC 3 cut(s) 32, 54, 185
Bsp143I GATC 2 cut(s) 61, 187
BspACI CCGC 1 cut(s) 36
BspANI GGCC 3 cut(s) 32, 54, 185
BsrDI GCAATG 1 cut(s) 135
BssMI GATC 2 cut(s) 61, 187
Bst2UI CCWGG 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 116
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 2 cut(s) 64, 190
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 2 cut(s) 61, 187
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 2 cut(s) 85, 148
BstSFI CTRYAG 1 cut(s) 225
BsuRI GGCC 3 cut(s) 32, 54, 185
BtrI CACGTC 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 34
CfoI GCGC 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 52
CviAII CATG 2 cut(s) 143, 233
CviJI RGCY 5 cut(s) 15, 32, 54, 185, 244
CviKI_1 RGCY 5 cut(s) 15, 32, 54, 185, 244
DdeI CTNAG 1 cut(s) 116
DpnI GATC 2 cut(s) 63, 189
DpnII GATC 2 cut(s) 61, 187
EaeI YGGCCR 2 cut(s) 30, 183
EcoRII CCWGG 1 cut(s) 148
FaeI CATG 2 cut(s) 146, 236
FaiI YATR 2 cut(s) 144, 234
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FaqI GGGAC 1 cut(s) 26
FatI CATG 2 cut(s) 142, 232
FblI GTMKAC 1 cut(s) 228
FspI TGCGCA 1 cut(s) 141
GlaI GCGC 1 cut(s) 141
HaeIII GGCC 3 cut(s) 32, 54, 185
HapII CCGG 3 cut(s) 86, 245, 258
HhaI GCGC 1 cut(s) 142
Hin1II CATG 2 cut(s) 146, 236
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HinfI GANTC 1 cut(s) 120
HpaII CCGG 3 cut(s) 86, 245, 258
Hpy166II GTNNAC 2 cut(s) 113, 229
Hpy188I TCNGA 3 cut(s) 164, 179, 221
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 2 cut(s) 113, 229
HpyCH4IV ACGT 1 cut(s) 75
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 2 cut(s) 146, 236
HspAI GCGC 1 cut(s) 140
Kzo9I GATC 2 cut(s) 61, 187
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 7 cut(s) 35, 46, 99, 135, 162, 237, 258
MaeII ACGT 1 cut(s) 75
MalI GATC 2 cut(s) 63, 189
MboI GATC 2 cut(s) 61, 187
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 32
MlyI GAGTC 1 cut(s) 114
MmeI TCCRAC 3 cut(s) 157, 242, 244
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MslI CAYNNNNRTG 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 36
MspI CCGG 3 cut(s) 86, 245, 258
MspR9I CCNGG 2 cut(s) 87, 150
Mva1269I GAATGC 1 cut(s) 85
MvaI CCWGG 1 cut(s) 150
NciI CCSGG 1 cut(s) 87
NdeII GATC 2 cut(s) 61, 187
NlaIII CATG 2 cut(s) 146, 236
NsbI TGCGCA 1 cut(s) 141
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PctI GAATGC 1 cut(s) 85
PflFI GACNNNGTC 1 cut(s) 233
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspPI GGNCC 1 cut(s) 52
PsyI GACNNNGTC 1 cut(s) 233
RseI CAYNNNNRTG 1 cut(s) 74
Sau3AI GATC 2 cut(s) 61, 187
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 2 cut(s) 87, 150
SetI ASST 5 cut(s) 78, 129, 151, 201, 226
SfcI CTRYAG 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 1 cut(s) 5
SsiI CCGC 1 cut(s) 36
StyD4I CCNGG 2 cut(s) 85, 148
TaiI ACGT 1 cut(s) 78
TaqI TCGA 2 cut(s) 99, 237
TasI AATT 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 159
Tth111I GACNNNGTC 1 cut(s) 233
XmiI GTMKAC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.