Rh1BG223000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0004869
Physical Location & Seq
Reverse (-)
34202349 .. 34202618
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG223000.1

Sequence Viewer

Length: 270 bp
ATGGAATTGAAAGGCTTATCACATTTCTTGGCCGGCGGTGTCCCAAATCTGGGCCTTGACGATCTAATCATTGACGTGAATGCTCCGGGTGGCAAACTCGACACCGATGGTGGACTTAAAATCGAGGTTGAACTCATTGCGCATGAACCTAGACAACAAATCAGATTTGCCGAAGCCGGAATGGCCGATCAAGACGACCTTGAAGTGGTAGTAGTCGTCCGACCTGTAGGCCATGTCGAAAAGCCGGAGAGAATTTCCGGTTGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.65

Weight (kDa)

4.73

Isoelectric Point (pI)

27.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 141
AciI CCGC 1 cut(s) 36
AcoI YGGCCR 2 cut(s) 30, 183
AcsI RAATTY 1 cut(s) 252
AfiI CCNNNNNNNGG 3 cut(s) 49, 50, 205
AgsI TTSAA 3 cut(s) 10, 131, 203
AjiI CACGTC 1 cut(s) 76
AjuI GAANNNNNNNTTGG 1 cut(s) 244
AoxI GGCC 4 cut(s) 30, 52, 183, 229
ApoI RAATTY 1 cut(s) 252
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 1 cut(s) 52
AsuC2I CCSGG 1 cut(s) 87
BccI CCATC 1 cut(s) 101
BcnI CCSGG 1 cut(s) 87
BfaI CTAG 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 225
BglI GCCNNNNNGGC 1 cut(s) 182
Bme1390I CCNGG 1 cut(s) 87
BmgBI CACGTC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 87
BsaWI WCCGGW 1 cut(s) 257
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 50, 205
Bse118I RCCGGY 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 135
BseLI CCNNNNNNNGG 3 cut(s) 49, 50, 205
BseMI GCAATG 1 cut(s) 135
BshFI GGCC 4 cut(s) 32, 54, 185, 231
BsiSI CCGG 5 cut(s) 33, 86, 177, 245, 258
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 3 cut(s) 49, 50, 205
BsmFI GGGAC 1 cut(s) 26
BsmI GAATGC 1 cut(s) 85
BsnI GGCC 4 cut(s) 32, 54, 185, 231
Bsp143I GATC 2 cut(s) 61, 187
BspACI CCGC 1 cut(s) 36
BspANI GGCC 4 cut(s) 32, 54, 185, 231
BsrDI GCAATG 1 cut(s) 135
BsrFI RCCGGY 1 cut(s) 32
BssAI RCCGGY 1 cut(s) 32
BssMI GATC 2 cut(s) 61, 187
BstC8I GCNNGC 1 cut(s) 34
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 2 cut(s) 64, 190
BstMBI GATC 2 cut(s) 61, 187
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 85
BstSFI CTRYAG 1 cut(s) 225
BsuRI GGCC 4 cut(s) 32, 54, 185, 231
BtrI CACGTC 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 34
CfoI GCGC 1 cut(s) 142
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 52
CviAII CATG 2 cut(s) 143, 233
CviJI RGCY 7 cut(s) 15, 32, 54, 176, 185, 231, 244
CviKI_1 RGCY 7 cut(s) 15, 32, 54, 176, 185, 231, 244
DpnI GATC 2 cut(s) 63, 189
DpnII GATC 2 cut(s) 61, 187
EaeI YGGCCR 2 cut(s) 30, 183
FaeI CATG 2 cut(s) 146, 236
FaiI YATR 2 cut(s) 144, 234
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FaqI GGGAC 1 cut(s) 26
FatI CATG 2 cut(s) 142, 232
FspBI CTAG 1 cut(s) 150
FspI TGCGCA 1 cut(s) 141
GlaI GCGC 1 cut(s) 141
HaeIII GGCC 4 cut(s) 32, 54, 185, 231
HapII CCGG 5 cut(s) 33, 86, 177, 245, 258
HhaI GCGC 1 cut(s) 142
Hin1II CATG 2 cut(s) 146, 236
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HpaII CCGG 5 cut(s) 33, 86, 177, 245, 258
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 164, 221
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 113
HpyCH4IV ACGT 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 2 cut(s) 146, 236
HspAI GCGC 1 cut(s) 140
KroI GCCGGC 1 cut(s) 32
KroNI GCCGGC 1 cut(s) 34
Kzo9I GATC 2 cut(s) 61, 187
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 6 cut(s) 35, 46, 99, 190, 237, 258
MaeI CTAG 1 cut(s) 150
MaeII ACGT 1 cut(s) 75
MalI GATC 2 cut(s) 63, 189
MboI GATC 2 cut(s) 61, 187
MluCI AATT 2 cut(s) 5, 252
MmeI TCCRAC 2 cut(s) 242, 244
MnlI CCTC 1 cut(s) 118
MroNI GCCGGC 1 cut(s) 32
MseI TTAA 1 cut(s) 117
MslI CAYNNNNRTG 1 cut(s) 74
MspI CCGG 5 cut(s) 33, 86, 177, 245, 258
MspR9I CCNGG 1 cut(s) 87
Mva1269I GAATGC 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 182
NaeI GCCGGC 1 cut(s) 34
NciI CCSGG 1 cut(s) 87
NdeII GATC 2 cut(s) 61, 187
NgoMIV GCCGGC 1 cut(s) 32
NlaIII CATG 2 cut(s) 146, 236
NsbI TGCGCA 1 cut(s) 141
PctI GAATGC 1 cut(s) 85
PdiI GCCGGC 1 cut(s) 34
PspPI GGNCC 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 1 cut(s) 117
Sau3AI GATC 2 cut(s) 61, 187
Sau96I GGNCC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 87
SetI ASST 5 cut(s) 78, 129, 151, 201, 226
SfcI CTRYAG 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 74
Sse9I AATT 2 cut(s) 5, 252
SsiI CCGC 1 cut(s) 36
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 85
TaiI ACGT 1 cut(s) 78
TaqI TCGA 3 cut(s) 99, 123, 237
TasI AATT 2 cut(s) 5, 252
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TspDTI ATGAA 1 cut(s) 159
XapI RAATTY 1 cut(s) 252
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.