No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD11G1092200.v1.1 MD14G1207400.v1.1 |
| pyrus_communis | pycom04g09480 |
| rosa_laevigata | RLG00000002647 RLG00000003273 RLG00000004832 RLG00000020604 RLG00000023106 RLG00000025072 RLG00000032712 RLG00000036050 |
| rosa_multiflora | Rmu_sc0008535.1_g000001 |
| rosa_rugosa | Rorug03G0293800 |
| rosa_samantha | Rh1AG358000 Rh1AG401600 Rh1BG223000 Rh1DG249900 Rh2CG166900 Rh2CG363400 Rh2DG386200 Rh3AG118400 Rh3BG123400 Rh3CG125100 Rh4BG086300 Rh5CG386900 Rh5CG408800 Rh5DG398800 Rh7BG143300 Rh7BG206700 Rh7CG109800 Rh7DG395600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 141 |
| AciI | CCGC | 1 cut(s) | 36 |
| AcoI | YGGCCR | 2 cut(s) | 30, 183 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 49, 50, 205 |
| AgsI | TTSAA | 3 cut(s) | 10, 131, 203 |
| AluBI | AGCT | 1 cut(s) | 15 |
| AluI | AGCT | 1 cut(s) | 15 |
| Ama87I | CYCGRG | 1 cut(s) | 122 |
| AoxI | GGCC | 3 cut(s) | 30, 52, 183 |
| AspLEI | GCGC | 1 cut(s) | 142 |
| AspS9I | GGNCC | 1 cut(s) | 52 |
| AsuC2I | CCSGG | 1 cut(s) | 87 |
| AvaI | CYCGRG | 1 cut(s) | 122 |
| BccI | CCATC | 1 cut(s) | 101 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 62, 96 |
| BcnI | CCSGG | 1 cut(s) | 87 |
| BfaI | CTAG | 1 cut(s) | 150 |
| Bme1390I | CCNGG | 1 cut(s) | 87 |
| BmeT110I | CYCGRG | 1 cut(s) | 122 |
| BmgT120I | GGNCC | 1 cut(s) | 52 |
| BmrFI | CCNGG | 1 cut(s) | 87 |
| BmsI | GCATC | 1 cut(s) | 70 |
| BpuMI | CCSGG | 1 cut(s) | 87 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 49, 50, 205 |
| Bse118I | RCCGGY | 2 cut(s) | 32, 176 |
| Bse3DI | GCAATG | 1 cut(s) | 135 |
| BseGI | GGATG | 1 cut(s) | 85 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 49, 50, 205 |
| BseMI | GCAATG | 1 cut(s) | 135 |
| BshFI | GGCC | 3 cut(s) | 32, 54, 185 |
| BsiHKCI | CYCGRG | 1 cut(s) | 122 |
| BsiSI | CCGG | 3 cut(s) | 33, 86, 177 |
| BslFI | GGGAC | 1 cut(s) | 26 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 49, 50, 205 |
| BsmFI | GGGAC | 1 cut(s) | 26 |
| BsnI | GGCC | 3 cut(s) | 32, 54, 185 |
| BsoBI | CYCGRG | 1 cut(s) | 122 |
| Bsp143I | GATC | 1 cut(s) | 187 |
| BspACI | CCGC | 1 cut(s) | 36 |
| BspANI | GGCC | 3 cut(s) | 32, 54, 185 |
| BsrDI | GCAATG | 1 cut(s) | 135 |
| BsrFI | RCCGGY | 2 cut(s) | 32, 176 |
| BssAI | RCCGGY | 2 cut(s) | 32, 176 |
| BssMI | GATC | 1 cut(s) | 187 |
| BstC8I | GCNNGC | 1 cut(s) | 34 |
| BstDEI | CTNAG | 1 cut(s) | 116 |
| BstF5I | GGATG | 1 cut(s) | 85 |
| BstHHI | GCGC | 1 cut(s) | 142 |
| BstKTI | GATC | 1 cut(s) | 190 |
| BstMBI | GATC | 1 cut(s) | 187 |
| BstSCI | CCNGG | 1 cut(s) | 85 |
| BsuRI | GGCC | 3 cut(s) | 32, 54, 185 |
| BtsCI | GGATG | 1 cut(s) | 85 |
| Cac8I | GCNNGC | 1 cut(s) | 34 |
| CfoI | GCGC | 1 cut(s) | 142 |
| Cfr10I | RCCGGY | 2 cut(s) | 32, 176 |
| Cfr13I | GGNCC | 1 cut(s) | 52 |
| CviAII | CATG | 3 cut(s) | 76, 143, 181 |
| CviJI | RGCY | 4 cut(s) | 15, 32, 54, 185 |
| CviKI_1 | RGCY | 4 cut(s) | 15, 32, 54, 185 |
| DdeI | CTNAG | 1 cut(s) | 116 |
| DpnI | GATC | 1 cut(s) | 189 |
| DpnII | GATC | 1 cut(s) | 187 |
| EaeI | YGGCCR | 2 cut(s) | 30, 183 |
| Eco88I | CYCGRG | 1 cut(s) | 122 |
| FaeI | CATG | 3 cut(s) | 79, 146, 184 |
| FaiI | YATR | 3 cut(s) | 77, 144, 182 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 183, 215 |
| FaqI | GGGAC | 1 cut(s) | 26 |
| FatI | CATG | 3 cut(s) | 75, 142, 180 |
| FokI | GGATG | 1 cut(s) | 92 |
| FspBI | CTAG | 1 cut(s) | 150 |
| FspI | TGCGCA | 1 cut(s) | 141 |
| GlaI | GCGC | 1 cut(s) | 141 |
| HaeIII | GGCC | 3 cut(s) | 32, 54, 185 |
| HapII | CCGG | 3 cut(s) | 33, 86, 177 |
| HhaI | GCGC | 1 cut(s) | 142 |
| Hin1II | CATG | 3 cut(s) | 79, 146, 184 |
| Hin6I | GCGC | 1 cut(s) | 140 |
| HinP1I | GCGC | 1 cut(s) | 140 |
| HindIII | AAGCTT | 1 cut(s) | 13 |
| HinfI | GANTC | 1 cut(s) | 120 |
| HpaII | CCGG | 3 cut(s) | 33, 86, 177 |
| Hpy166II | GTNNAC | 1 cut(s) | 113 |
| Hpy188I | TCNGA | 2 cut(s) | 164, 221 |
| Hpy188III | TCNNGA | 1 cut(s) | 191 |
| Hpy8I | GTNNAC | 1 cut(s) | 113 |
| HpyF3I | CTNAG | 1 cut(s) | 116 |
| Hsp92II | CATG | 3 cut(s) | 79, 146, 184 |
| HspAI | GCGC | 1 cut(s) | 140 |
| KroI | GCCGGC | 1 cut(s) | 32 |
| KroNI | GCCGGC | 1 cut(s) | 34 |
| Kzo9I | GATC | 1 cut(s) | 187 |
| LmnI | GCTCC | 1 cut(s) | 88 |
| LpnPI | CCDG | 4 cut(s) | 35, 46, 99, 190 |
| LweI | GCATC | 1 cut(s) | 70 |
| MaeI | CTAG | 1 cut(s) | 150 |
| MalI | GATC | 1 cut(s) | 189 |
| MboI | GATC | 1 cut(s) | 187 |
| MluCI | AATT | 1 cut(s) | 5 |
| MlyI | GAGTC | 1 cut(s) | 114 |
| MnlI | CCTC | 1 cut(s) | 118 |
| MroNI | GCCGGC | 1 cut(s) | 32 |
| MslI | CAYNNNNRTG | 1 cut(s) | 74 |
| MspI | CCGG | 3 cut(s) | 33, 86, 177 |
| MspR9I | CCNGG | 1 cut(s) | 87 |
| NaeI | GCCGGC | 1 cut(s) | 34 |
| NciI | CCSGG | 1 cut(s) | 87 |
| NdeII | GATC | 1 cut(s) | 187 |
| NgoMIV | GCCGGC | 1 cut(s) | 32 |
| NlaIII | CATG | 3 cut(s) | 79, 146, 184 |
| NsbI | TGCGCA | 1 cut(s) | 141 |
| PaeR7I | CTCGAG | 1 cut(s) | 122 |
| PdiI | GCCGGC | 1 cut(s) | 34 |
| PleI | GAGTC | 1 cut(s) | 114 |
| PpsI | GAGTC | 1 cut(s) | 114 |
| PspPI | GGNCC | 1 cut(s) | 52 |
| PspXI | VCTCGAGB | 1 cut(s) | 122 |
| RseI | CAYNNNNRTG | 1 cut(s) | 74 |
| Sau3AI | GATC | 1 cut(s) | 187 |
| Sau96I | GGNCC | 1 cut(s) | 52 |
| SchI | GAGTC | 1 cut(s) | 114 |
| ScrFI | CCNGG | 1 cut(s) | 87 |
| SetI | ASST | 4 cut(s) | 17, 129, 151, 201 |
| SfaNI | GCATC | 1 cut(s) | 70 |
| Sfr274I | CTCGAG | 1 cut(s) | 122 |
| SlaI | CTCGAG | 1 cut(s) | 122 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 74 |
| SmlI | CTYRAG | 1 cut(s) | 122 |
| SmoI | CTYRAG | 1 cut(s) | 122 |
| Sse9I | AATT | 1 cut(s) | 5 |
| SsiI | CCGC | 1 cut(s) | 36 |
| SspMI | CTAG | 1 cut(s) | 150 |
| StyD4I | CCNGG | 1 cut(s) | 85 |
| TaqI | TCGA | 3 cut(s) | 72, 99, 123 |
| TasI | AATT | 1 cut(s) | 5 |
| TspDTI | ATGAA | 1 cut(s) | 159 |
| XhoI | CTCGAG | 1 cut(s) | 122 |
| XspI | CTAG | 1 cut(s) | 150 |