RLG00000032712

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004869
Physical Location & Seq
Reverse (-)
18108164 .. 18111041
2878 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032712

Sequence Viewer

Length: 420 bp
ATGGGCCTTGATGATCTAATCATCGACGTGGAAGCTCCGGGTGCCGAACTCGATGCCGATTGTGGACTTAGACTCGAGGTAGAACTCGTTGCTCATGAACCTGGACAACAAGTCGGATTTTCCGATGCCGGAATTGCTGATCAAGACAACCTTGAAGTGGTAGTCGTCGTCCGACCTGCCATGTCGAAGAGCAGGAGAGACTTTTCGATTGGAGATGAAGAGGTCGCGGGCCTTGTCGTCGTCGTTGGAGAATTAAAGCACCAAGACTGCTCGATCTGCTTCTCGGACCCGGTGACGCCACGAGCTAACCCGACTTCATCTTCCGATTTCGACTACACCATCCACACCAAGATCATCAAGCCGAGCATCTCCATTGGGAAGGAGTGCTTTGAGCGCAACGTCGTCAACTGCGTCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.02

Weight (kDa)

4.34

Isoelectric Point (pI)

30.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 184
AccB1I GGYRCC 1 cut(s) 41
AccII CGCG 1 cut(s) 227
AciI CCGC 1 cut(s) 227
AcyI GRCGYC 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 157
AgsI TTSAA 1 cut(s) 155
AhdI GACNNNNNGTC 1 cut(s) 110
AjiI CACGTC 1 cut(s) 28
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 2 cut(s) 35, 305
AluI AGCT 2 cut(s) 35, 305
Alw26I GTCTC 1 cut(s) 192
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 2 cut(s) 4, 229
AspLEI GCGC 1 cut(s) 396
AspS9I GGNCC 3 cut(s) 4, 229, 286
AsuC2I CCSGG 2 cut(s) 39, 290
AsuHPI GGTGA 1 cut(s) 304
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 1 cut(s) 286
BanI GGYRCC 1 cut(s) 41
BauI CACGAG 1 cut(s) 300
BbsI GAAGAC 1 cut(s) 406
BccI CCATC 1 cut(s) 347
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BciT130I CCWGG 1 cut(s) 102
BclI TGATCA 1 cut(s) 139
BcnI CCSGG 2 cut(s) 39, 290
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 1 cut(s) 418
BfuAI ACCTGC 1 cut(s) 184
Bme1390I CCNGG 3 cut(s) 39, 102, 290
Bme18I GGWCC 1 cut(s) 286
BmeRI GACNNNNNGTC 1 cut(s) 110
BmeT110I CYCGRG 1 cut(s) 74
BmgBI CACGTC 1 cut(s) 28
BmgT120I GGNCC 3 cut(s) 4, 229, 286
BmiI GGNNCC 2 cut(s) 43, 288
BmrFI CCNGG 3 cut(s) 39, 102, 290
BmsI GCATC 3 cut(s) 43, 115, 375
BpiI GAAGAC 1 cut(s) 406
BpuMI CCSGG 2 cut(s) 39, 290
BsaHI GRCGYC 1 cut(s) 296
Bsc4I CCNNNNNNNGG 1 cut(s) 157
BseBI CCWGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 339
BseLI CCNNNNNNNGG 1 cut(s) 157
Bsh1236I CGCG 1 cut(s) 227
BshFI GGCC 2 cut(s) 6, 231
BshNI GGYRCC 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 3 cut(s) 38, 129, 290
BslI CCNNNNNNNGG 1 cut(s) 157
BsmAI GTCTC 1 cut(s) 192
BsnI GGCC 2 cut(s) 6, 231
BsoBI CYCGRG 1 cut(s) 74
Bsp143I GATC 4 cut(s) 13, 139, 273, 351
BspACI CCGC 1 cut(s) 227
BspANI GGCC 2 cut(s) 6, 231
BspFNI CGCG 1 cut(s) 227
BspHI TCATGA 1 cut(s) 94
BspLI GGNNCC 2 cut(s) 43, 288
BspMI ACCTGC 1 cut(s) 184
BspQI GCTCTTC 1 cut(s) 182
BspT107I GGYRCC 1 cut(s) 41
BssMI GATC 4 cut(s) 13, 139, 273, 351
BssNI GRCGYC 1 cut(s) 296
BssSI CACGAG 1 cut(s) 300
Bst2BI CACGAG 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 102
Bst6I CTCTTC 2 cut(s) 182, 213
BstACI GRCGYC 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 68
BstF5I GGATG 1 cut(s) 339
BstFNI CGCG 1 cut(s) 227
BstHHI GCGC 1 cut(s) 396
BstKTI GATC 4 cut(s) 16, 142, 276, 354
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 4 cut(s) 13, 139, 273, 351
BstMWI GCNNNNNNNGC 4 cut(s) 41, 134, 276, 393
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 3 cut(s) 37, 100, 288
BstUI CGCG 1 cut(s) 227
BstV2I GAAGAC 1 cut(s) 406
BsuRI GGCC 2 cut(s) 6, 231
BtrI CACGTC 1 cut(s) 28
BtsCI GGATG 1 cut(s) 339
BveI ACCTGC 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 229
CciI TCATGA 1 cut(s) 94
CfoI GCGC 1 cut(s) 396
Cfr13I GGNCC 3 cut(s) 4, 229, 286
CseI GACGC 2 cut(s) 304, 400
CviAII CATG 2 cut(s) 95, 181
CviJI RGCY 5 cut(s) 6, 35, 231, 305, 361
CviKI_1 RGCY 5 cut(s) 6, 35, 231, 305, 361
DdeI CTNAG 1 cut(s) 68
DpnI GATC 4 cut(s) 15, 141, 275, 353
DpnII GATC 4 cut(s) 13, 139, 273, 351
DriI GACNNNNNGTC 1 cut(s) 110
Eam1104I CTCTTC 2 cut(s) 182, 213
Eam1105I GACNNNNNGTC 1 cut(s) 110
EarI CTCTTC 2 cut(s) 182, 213
Eco47I GGWCC 1 cut(s) 286
Eco88I CYCGRG 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 100
FaeI CATG 2 cut(s) 98, 184
FaiI YATR 2 cut(s) 96, 182
FalI AAGNNNNNCTT 4 cut(s) 135, 167, 371, 403
FatI CATG 2 cut(s) 94, 180
FauI CCCGC 1 cut(s) 220
FbaI TGATCA 1 cut(s) 139
FokI GGATG 1 cut(s) 326
FspBI CTAG 1 cut(s) 418
GlaI GCGC 1 cut(s) 395
HaeIII GGCC 2 cut(s) 6, 231
HapII CCGG 3 cut(s) 38, 129, 290
HgaI GACGC 2 cut(s) 304, 400
HhaI GCGC 1 cut(s) 396
Hin1I GRCGYC 1 cut(s) 296
Hin1II CATG 2 cut(s) 98, 184
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 1 cut(s) 72
HpaII CCGG 3 cut(s) 38, 129, 290
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 2 cut(s) 65, 406
Hpy188I TCNGA 5 cut(s) 116, 124, 173, 286, 325
Hpy188III TCNNGA 2 cut(s) 95, 143
Hpy8I GTNNAC 2 cut(s) 65, 406
Hpy99I CGWCG 5 cut(s) 29, 170, 242, 245, 404
HpyAV CCTTC 1 cut(s) 373
HpyCH4IV ACGT 2 cut(s) 27, 399
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 134, 276, 393
HpyF3I CTNAG 1 cut(s) 68
HpySE526I ACGT 2 cut(s) 27, 399
Hsp92I GRCGYC 1 cut(s) 296
Hsp92II CATG 2 cut(s) 98, 184
HspAI GCGC 1 cut(s) 394
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 4 cut(s) 13, 139, 273, 351
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 7 cut(s) 51, 87, 114, 142, 178, 189, 303
LweI GCATC 3 cut(s) 43, 115, 375
MaeI CTAG 1 cut(s) 418
MaeII ACGT 2 cut(s) 27, 399
MaeIII GTNAC 1 cut(s) 292
MalI GATC 4 cut(s) 15, 141, 275, 353
MboI GATC 4 cut(s) 13, 139, 273, 351
MboII GAAGA 4 cut(s) 199, 230, 312, 406
MluCI AATT 2 cut(s) 132, 251
MlyI GAGTC 1 cut(s) 66
MmeI TCCRAC 3 cut(s) 94, 196, 226
MnlI CCTC 2 cut(s) 70, 214
MseI TTAA 1 cut(s) 254
MslI CAYNNNNRTG 1 cut(s) 26
MspI CCGG 3 cut(s) 38, 129, 290
MspR9I CCNGG 3 cut(s) 39, 102, 290
MvaI CCWGG 1 cut(s) 102
MvnI CGCG 1 cut(s) 227
MwoI GCNNNNNNNGC 4 cut(s) 41, 134, 276, 393
NciI CCSGG 2 cut(s) 39, 290
NdeII GATC 4 cut(s) 13, 139, 273, 351
NlaIII CATG 2 cut(s) 98, 184
NlaIV GGNNCC 2 cut(s) 43, 288
NmeAIII GCCGAG 1 cut(s) 387
NmuCI GTSAC 1 cut(s) 292
PaeR7I CTCGAG 1 cut(s) 74
PagI TCATGA 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 182
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 408
PleI GAGTC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 43, 288
PspPI GGNCC 3 cut(s) 4, 229, 286
PspXI VCTCGAGB 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 26
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 1 cut(s) 254
Sau3AI GATC 4 cut(s) 13, 139, 273, 351
Sau96I GGNCC 3 cut(s) 4, 229, 286
SchI GAGTC 1 cut(s) 66
ScrFI CCNGG 3 cut(s) 39, 102, 290
SetI ASST 9 cut(s) 30, 37, 81, 103, 153, 178, 225, 307, 402
SfaNI GCATC 3 cut(s) 43, 115, 375
Sfr274I CTCGAG 1 cut(s) 74
SinI GGWCC 1 cut(s) 286
SlaI CTCGAG 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 2 cut(s) 132, 251
SsiI CCGC 1 cut(s) 227
SspMI CTAG 1 cut(s) 418
StyD4I CCNGG 3 cut(s) 37, 100, 288
TaiI ACGT 2 cut(s) 30, 402
TaqI TCGA 7 cut(s) 24, 51, 75, 185, 206, 272, 330
TasI AATT 2 cut(s) 132, 251
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TseFI GTSAC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 3 cut(s) 111, 231, 306
VpaK11BI GGWCC 1 cut(s) 286
XhoI CTCGAG 1 cut(s) 74
XspI CTAG 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.