RLG00000002647

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004869
Physical Location & Seq
Forward (+)
37498968 .. 37503136
4169 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002647

Sequence Viewer

Length: 606 bp
ATGGAATTGAAAGGCTTATCACCTTTCTTGGCCGACTGTGTCCCAAATCTGGGCCTTGACGATCTTATCATCGAAGTGGATGCTCCGAGTGGCGAACTCAACGCCGATGGTGGATATAGACTCGAGGTTGAATTCGTTGCGCATGAACCTGGACAAGAGGTTGGATTTGCTGACGCCAGAATCACCGATGAAGACGACCTTGAAGAGGTAGTCATAGTCATAGTCCGATCTATAGGCCATCTCGAAGAGTCGGAGAGACTTTTCGGTTGGGATTTTCGATTGGGGATGAAGAAGCCGAGGGCCTTGTCGTTGTCACCGGAGAAGAAGTCCTCATTTAGGGTTCCGATGCGATGCAGGGATGAGACGATAGCCTCTGAGAAAGTAGATTTGGCCTTCCTCCCGTTCTCTTTTGCAATACTGCAAGTCTGCAATCATGGATTCCTCAAGGTCTTTGACGACCAGGCTCTTTCTCTCCCTCTCCAAGAAGAGGAAAAGAAGCTCCAAACGAAGGAGGAGAAGAAGAGAAGAGAAGAGAAGAGAGGAGAAGAACGTACCGGAAGCTTCAGCTGTTTTTCAAAGTCTAATCGAAGAAAGTCTGTATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

22.76

Weight (kDa)

5.05

Isoelectric Point (pI)

51.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 141
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 547
AcyI GRCGYC 1 cut(s) 174
AfaI GTAC 1 cut(s) 553
AfiI CCNNNNNNNGG 6 cut(s) 49, 50, 205, 336, 487, 508
AgsI TTSAA 4 cut(s) 10, 131, 203, 576
AjnI CCWGG 2 cut(s) 148, 459
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AluBI AGCT 3 cut(s) 499, 561, 567
AluI AGCT 3 cut(s) 499, 561, 567
Alw26I GTCTC 2 cut(s) 250, 356
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 5 cut(s) 30, 52, 235, 300, 390
ApoI RAATTY 1 cut(s) 131
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 2 cut(s) 52, 300
AsuHPI GGTGA 3 cut(s) 12, 175, 306
AvaI CYCGRG 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 198
BccI CCATC 2 cut(s) 101, 246
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BciT130I CCWGG 2 cut(s) 150, 461
BcoDI GTCTC 2 cut(s) 250, 356
BfmI CTRYAG 1 cut(s) 231
Bme1390I CCNGG 2 cut(s) 150, 461
BmeT110I CYCGRG 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 52, 300
BmiI GGNNCC 1 cut(s) 342
BmrFI CCNGG 2 cut(s) 150, 461
BmsI GCATC 3 cut(s) 70, 336, 341
BpiI GAAGAC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 428
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 296
BsaWI WCCGGW 2 cut(s) 316, 554
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 6 cut(s) 49, 50, 205, 336, 487, 508
BseBI CCWGG 2 cut(s) 150, 461
BseDI CCNNGG 1 cut(s) 296
BseGI GGATG 3 cut(s) 85, 291, 364
BseLI CCNNNNNNNGG 6 cut(s) 49, 50, 205, 336, 487, 508
BseMII CTCAG 1 cut(s) 366
BseRI GAGGAG 2 cut(s) 527, 555
BshFI GGCC 5 cut(s) 32, 54, 237, 302, 392
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 2 cut(s) 317, 555
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 6 cut(s) 49, 50, 205, 336, 487, 508
BsmAI GTCTC 2 cut(s) 250, 356
BsmBI CGTCTC 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 5 cut(s) 32, 54, 237, 302, 392
BsoBI CYCGRG 1 cut(s) 122
Bsp143I GATC 2 cut(s) 61, 227
BspANI GGCC 5 cut(s) 32, 54, 237, 302, 392
BspCNI CTCAG 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 342
BssECI CCNNGG 1 cut(s) 296
BssMI GATC 2 cut(s) 61, 227
BssNI GRCGYC 1 cut(s) 174
Bst2UI CCWGG 2 cut(s) 150, 461
Bst4CI ACNGT 1 cut(s) 38
Bst6I CTCTTC 7 cut(s) 198, 240, 480, 515, 520, 525, 530
BstACI GRCGYC 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 375
BstENI CCTNNNNNAGG 2 cut(s) 203, 334
BstF5I GGATG 3 cut(s) 85, 291, 364
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 2 cut(s) 64, 230
BstMAI GTCTC 2 cut(s) 250, 356
BstMBI GATC 2 cut(s) 61, 227
BstNI CCWGG 2 cut(s) 150, 461
BstSCI CCNGG 2 cut(s) 148, 459
BstSFI CTRYAG 1 cut(s) 231
BstV2I GAAGAC 1 cut(s) 198
BsuRI GGCC 5 cut(s) 32, 54, 237, 302, 392
BtgZI GCGATG 1 cut(s) 364
BtsCI GGATG 3 cut(s) 85, 291, 364
CfoI GCGC 1 cut(s) 142
Cfr13I GGNCC 2 cut(s) 52, 300
CseI GACGC 1 cut(s) 182
Csp6I GTAC 1 cut(s) 552
CviAII CATG 2 cut(s) 143, 434
CviQI GTAC 1 cut(s) 552
DdeI CTNAG 1 cut(s) 375
DpnI GATC 2 cut(s) 63, 229
DpnII GATC 2 cut(s) 61, 227
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 7 cut(s) 198, 240, 480, 515, 520, 525, 530
EarI CTCTTC 7 cut(s) 198, 240, 480, 515, 520, 525, 530
Eco57I CTGAAG 1 cut(s) 547
Eco88I CYCGRG 1 cut(s) 122
EcoNI CCTNNNNNAGG 2 cut(s) 203, 334
EcoO109I RGGNCCY 1 cut(s) 300
EcoRI GAATTC 1 cut(s) 131
EcoRII CCWGG 2 cut(s) 148, 459
Esp3I CGTCTC 1 cut(s) 356
FaeI CATG 2 cut(s) 146, 437
FaiI YATR 6 cut(s) 117, 144, 215, 221, 233, 435
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FaqI GGGAC 1 cut(s) 26
FatI CATG 2 cut(s) 142, 433
FokI GGATG 3 cut(s) 92, 298, 371
FspI TGCGCA 1 cut(s) 141
GlaI GCGC 1 cut(s) 141
HaeIII GGCC 5 cut(s) 32, 54, 237, 302, 392
HapII CCGG 2 cut(s) 317, 555
HgaI GACGC 1 cut(s) 182
HhaI GCGC 1 cut(s) 142
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 2 cut(s) 146, 437
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HindIII AAGCTT 1 cut(s) 559
HinfI GANTC 4 cut(s) 120, 180, 248, 438
HpaII CCGG 2 cut(s) 317, 555
HphI GGTGA 3 cut(s) 12, 175, 306
Hpy188I TCNGA 5 cut(s) 87, 227, 253, 345, 376
Hpy188III TCNNGA 2 cut(s) 242, 603
HpyAV CCTTC 2 cut(s) 403, 502
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4IV ACGT 1 cut(s) 550
HpyCH4V TGCA 4 cut(s) 354, 413, 421, 429
HpyF3I CTNAG 1 cut(s) 375
HpySE526I ACGT 1 cut(s) 550
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 2 cut(s) 146, 437
HspAI GCGC 1 cut(s) 140
Kzo9I GATC 2 cut(s) 61, 227
LmnI GCTCC 2 cut(s) 88, 504
LpnPI CCDG 9 cut(s) 35, 135, 162, 190, 330, 340, 446, 473, 568
LweI GCATC 3 cut(s) 70, 336, 341
MaeII ACGT 1 cut(s) 550
MaeIII GTNAC 1 cut(s) 312
MalI GATC 2 cut(s) 63, 229
MboI GATC 2 cut(s) 61, 227
MluCI AATT 2 cut(s) 5, 131
MlyI GAGTC 2 cut(s) 114, 257
MmeI TCCRAC 2 cut(s) 142, 231
MslI CAYNNNNRTG 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 567
MspI CCGG 2 cut(s) 317, 555
MspR9I CCNGG 2 cut(s) 150, 461
MvaI CCWGG 2 cut(s) 150, 461
NdeII GATC 2 cut(s) 61, 227
NlaIII CATG 2 cut(s) 146, 437
NlaIV GGNNCC 1 cut(s) 342
NmeAIII GCCGAG 1 cut(s) 321
NmuCI GTSAC 1 cut(s) 312
NsbI TGCGCA 1 cut(s) 141
PaeR7I CTCGAG 1 cut(s) 122
PfeI GAWTC 2 cut(s) 180, 438
PflFI GACNNNGTC 1 cut(s) 38
PleI GAGTC 2 cut(s) 114, 256
PpsI GAGTC 2 cut(s) 114, 256
Psp6I CCWGG 2 cut(s) 148, 459
PspGI CCWGG 2 cut(s) 148, 459
PspN4I GGNNCC 1 cut(s) 342
PspPI GGNCC 2 cut(s) 52, 300
PspXI VCTCGAGB 1 cut(s) 122
PsyI GACNNNGTC 1 cut(s) 38
PvuII CAGCTG 1 cut(s) 567
RsaI GTAC 1 cut(s) 553
RsaNI GTAC 1 cut(s) 552
RseI CAYNNNNRTG 1 cut(s) 74
Sau3AI GATC 2 cut(s) 61, 227
Sau96I GGNCC 2 cut(s) 52, 300
SchI GAGTC 2 cut(s) 114, 257
ScrFI CCNGG 2 cut(s) 150, 461
SfaNI GCATC 3 cut(s) 70, 336, 341
SfcI CTRYAG 1 cut(s) 231
Sfr274I CTCGAG 1 cut(s) 122
SlaI CTCGAG 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 2 cut(s) 122, 443
SmoI CTYRAG 2 cut(s) 122, 443
Sse9I AATT 2 cut(s) 5, 131
StyD4I CCNGG 2 cut(s) 148, 459
TaaI ACNGT 1 cut(s) 38
TaiI ACGT 1 cut(s) 553
TaqI TCGA 5 cut(s) 72, 123, 243, 277, 586
TasI AATT 2 cut(s) 5, 131
TfiI GAWTC 2 cut(s) 180, 438
TseFI GTSAC 1 cut(s) 312
Tsp45I GTSAC 1 cut(s) 312
TspDTI ATGAA 3 cut(s) 159, 204, 302
Tth111I GACNNNGTC 1 cut(s) 38
XagI CCTNNNNNAGG 2 cut(s) 203, 334
XapI RAATTY 1 cut(s) 131
XhoI CTCGAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.