Rh4BG086300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0004869
Physical Location & Seq
Reverse (-)
14832558 .. 14832833
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG086300.1

Sequence Viewer

Length: 276 bp
ATGGAATTGAAAGGCTTATCACATTTCATGGTCGGCGATGTCCCAAATCTGGGCCTTGACGATCTAATCATCGACGTGGTTGCTCCGGGTGGCAAACTCGACACTGATGGTGGACTTAGACTCGAGGTTGAACTCGTTGTGCATGAACCTGGACAACAAATCGGATTTGCCGATGCCGGAATCGCCAATCAAGACAACCTTCAAGTGGTAGTCGTCGTCCGACCTGTAGGCCATGTCGAAGAGCCTTTCCGGTTGGAGATTTTCGATTGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.93

Weight (kDa)

4.35

Isoelectric Point (pI)

32.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 3 cut(s) 49, 50, 205
AgsI TTSAA 3 cut(s) 10, 131, 203
AjiI CACGTC 1 cut(s) 76
AjnI CCWGG 1 cut(s) 148
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 2 cut(s) 52, 229
AspS9I GGNCC 1 cut(s) 52
AsuC2I CCSGG 1 cut(s) 87
AvaI CYCGRG 1 cut(s) 122
BccI CCATC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BciT130I CCWGG 1 cut(s) 150
BcnI CCSGG 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 225
Bme1390I CCNGG 2 cut(s) 87, 150
BmeT110I CYCGRG 1 cut(s) 122
BmgBI CACGTC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 52
BmrFI CCNGG 2 cut(s) 87, 150
BmsI GCATC 1 cut(s) 163
BpuMI CCSGG 1 cut(s) 87
BsaWI WCCGGW 1 cut(s) 249
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 50, 205
BseBI CCWGG 1 cut(s) 150
BseLI CCNNNNNNNGG 3 cut(s) 49, 50, 205
BshFI GGCC 2 cut(s) 54, 231
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 3 cut(s) 86, 177, 250
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 3 cut(s) 49, 50, 205
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 2 cut(s) 54, 231
BsoBI CYCGRG 1 cut(s) 122
Bsp143I GATC 1 cut(s) 61
BspANI GGCC 2 cut(s) 54, 231
BspQI GCTCTTC 1 cut(s) 234
BssMI GATC 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 150
Bst6I CTCTTC 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 116
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 2 cut(s) 85, 148
BstSFI CTRYAG 1 cut(s) 225
BsuRI GGCC 2 cut(s) 54, 231
BtgZI GCGATG 1 cut(s) 51
BtrI CACGTC 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 102
Cfr13I GGNCC 1 cut(s) 52
CviAII CATG 3 cut(s) 28, 143, 233
CviJI RGCY 4 cut(s) 15, 54, 231, 244
CviKI_1 RGCY 4 cut(s) 15, 54, 231, 244
DdeI CTNAG 1 cut(s) 116
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 148
FaeI CATG 3 cut(s) 31, 146, 236
FaiI YATR 3 cut(s) 29, 144, 234
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FaqI GGGAC 1 cut(s) 26
FatI CATG 3 cut(s) 27, 142, 232
HaeIII GGCC 2 cut(s) 54, 231
HapII CCGG 3 cut(s) 86, 177, 250
Hin1II CATG 3 cut(s) 31, 146, 236
HinfI GANTC 2 cut(s) 120, 180
HpaII CCGG 3 cut(s) 86, 177, 250
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 164, 221
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 113
Hpy99I CGWCG 2 cut(s) 77, 218
HpyAV CCTTC 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 3 cut(s) 31, 146, 236
Kzo9I GATC 1 cut(s) 61
LguI GCTCTTC 1 cut(s) 234
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 7 cut(s) 35, 99, 135, 162, 190, 237, 263
LweI GCATC 1 cut(s) 163
MaeII ACGT 1 cut(s) 75
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 1 cut(s) 251
MluCI AATT 1 cut(s) 5
MlyI GAGTC 1 cut(s) 114
MmeI TCCRAC 2 cut(s) 234, 244
MnlI CCTC 1 cut(s) 118
MslI CAYNNNNRTG 1 cut(s) 74
MspI CCGG 3 cut(s) 86, 177, 250
MspR9I CCNGG 2 cut(s) 87, 150
MvaI CCWGG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 182
NciI CCSGG 1 cut(s) 87
NdeII GATC 1 cut(s) 61
NlaIII CATG 3 cut(s) 31, 146, 236
PaeR7I CTCGAG 1 cut(s) 122
PciSI GCTCTTC 1 cut(s) 234
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PfeI GAWTC 1 cut(s) 180
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspPI GGNCC 1 cut(s) 52
PspXI VCTCGAGB 1 cut(s) 122
RseI CAYNNNNRTG 1 cut(s) 74
SapI GCTCTTC 1 cut(s) 234
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 2 cut(s) 87, 150
SetI ASST 5 cut(s) 78, 129, 151, 201, 226
SfaNI GCATC 1 cut(s) 163
SfcI CTRYAG 1 cut(s) 225
Sfr274I CTCGAG 1 cut(s) 122
SlaI CTCGAG 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 1 cut(s) 5
StyD4I CCNGG 2 cut(s) 85, 148
TaiI ACGT 1 cut(s) 78
TaqI TCGA 5 cut(s) 72, 99, 123, 237, 264
TasI AATT 1 cut(s) 5
TfiI GAWTC 1 cut(s) 180
TscAI CASTG 1 cut(s) 109
TspDTI ATGAA 2 cut(s) 16, 159
TspRI CASTG 1 cut(s) 109
XhoI CTCGAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.