Rh5DG398800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0004869
Physical Location & Seq
Reverse (-)
62864976 .. 62865308
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG398800.1

Sequence Viewer

Length: 333 bp
ATGGAATTAAAAGGCCTATCACCTTTCTTGGCCGACAGTGTCCCAAATCTGGGCTTTGATGATCTAATCATCGACGTGGATGCTTCGAGTGGCGAACTCGACGCCGATGGTGGAGCTAGACTCAAGGTTAAACTCATTGCACATGAACCTGGACAACAAGTTGGATTTGCCAACGCCGAAATCACCTATCAAGACGACCTTGAAGAGGCAGTCGTCATTCAACCTATAGGACATGTTGAAGAGTCGGAGAGACTTTCCGGTTGGAGATTTTCGATTGGAGTTGAAAAGGTCGCGGGCCTTGTCATCGTCGCCAGAGAATCAATGCTCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.8

Weight (kDa)

4.28

Isoelectric Point (pI)

31.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 293
AciI CCGC 1 cut(s) 293
AcoI YGGCCR 1 cut(s) 30
AcyI GRCGYC 1 cut(s) 102
AfiI CCNNNNNNNGG 3 cut(s) 49, 50, 205
AflIII ACRYGT 1 cut(s) 232
AgsI TTSAA 4 cut(s) 203, 221, 239, 284
AjiI CACGTC 1 cut(s) 76
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 244
AoxI GGCC 3 cut(s) 13, 30, 295
AspS9I GGNCC 1 cut(s) 295
AsuHPI GGTGA 2 cut(s) 12, 175
BccI CCATC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BciT130I CCWGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 1 cut(s) 117
BfmI CTRYAG 1 cut(s) 225
Bme1390I CCNGG 1 cut(s) 150
BmgBI CACGTC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 295
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 70
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BpuEI CTTGAG 1 cut(s) 107
BsaHI GRCGYC 1 cut(s) 102
BsaWI WCCGGW 1 cut(s) 257
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 50, 205
Bse3DI GCAATG 1 cut(s) 135
BseBI CCWGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 3 cut(s) 49, 50, 205
BseMI GCAATG 1 cut(s) 135
Bsh1236I CGCG 1 cut(s) 293
BshFI GGCC 3 cut(s) 15, 32, 297
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 3 cut(s) 49, 50, 205
BsmAI GTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 3 cut(s) 15, 32, 297
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 1 cut(s) 293
BspANI GGCC 3 cut(s) 15, 32, 297
BspFNI CGCG 1 cut(s) 293
BsrDI GCAATG 1 cut(s) 135
BssMI GATC 1 cut(s) 61
BssNI GRCGYC 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 38
Bst6I CTCTTC 2 cut(s) 198, 234
BstACI GRCGYC 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 295
BstENI CCTNNNNNAGG 1 cut(s) 203
BstF5I GGATG 1 cut(s) 85
BstFNI CGCG 1 cut(s) 293
BstKTI GATC 1 cut(s) 64
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 1 cut(s) 61
BstNI CCWGG 1 cut(s) 150
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 1 cut(s) 225
BstUI CGCG 1 cut(s) 293
BsuRI GGCC 3 cut(s) 15, 32, 297
BtrI CACGTC 1 cut(s) 76
BtsCI GGATG 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 295
Cfr13I GGNCC 1 cut(s) 295
CseI GACGC 1 cut(s) 110
CviAII CATG 2 cut(s) 143, 233
CviJI RGCY 5 cut(s) 15, 32, 54, 116, 297
CviKI_1 RGCY 5 cut(s) 15, 32, 54, 116, 297
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 2 cut(s) 198, 234
EarI CTCTTC 2 cut(s) 198, 234
Eco147I AGGCCT 1 cut(s) 15
EcoNI CCTNNNNNAGG 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 148
FaeI CATG 2 cut(s) 146, 236
FaiI YATR 3 cut(s) 144, 227, 234
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FaqI GGGAC 1 cut(s) 26
FatI CATG 2 cut(s) 142, 232
FauI CCCGC 1 cut(s) 286
FokI GGATG 1 cut(s) 92
FspBI CTAG 1 cut(s) 117
HaeIII GGCC 3 cut(s) 15, 32, 297
HapII CCGG 1 cut(s) 258
HgaI GACGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 2 cut(s) 146, 236
HinfI GANTC 3 cut(s) 120, 242, 317
HpaII CCGG 1 cut(s) 258
HphI GGTGA 2 cut(s) 12, 175
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 1 cut(s) 191
Hpy99I CGWCG 3 cut(s) 77, 104, 311
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 140
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 2 cut(s) 146, 236
Kzo9I GATC 1 cut(s) 61
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 5 cut(s) 35, 135, 162, 271, 325
LweI GCATC 1 cut(s) 70
MaeI CTAG 1 cut(s) 117
MaeII ACGT 1 cut(s) 75
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 2 cut(s) 215, 251
MluCI AATT 1 cut(s) 5
MlyI GAGTC 2 cut(s) 114, 251
MmeI TCCRAC 3 cut(s) 142, 225, 242
MnlI CCTC 1 cut(s) 199
MseI TTAA 3 cut(s) 8, 129, 331
MslI CAYNNNNRTG 1 cut(s) 74
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
MvnI CGCG 1 cut(s) 293
NdeII GATC 1 cut(s) 61
NlaIII CATG 2 cut(s) 146, 236
NspI RCATGY 1 cut(s) 236
PceI AGGCCT 1 cut(s) 15
PciI ACATGT 1 cut(s) 232
PfeI GAWTC 1 cut(s) 317
PflFI GACNNNGTC 1 cut(s) 38
PleI GAGTC 2 cut(s) 114, 250
PpsI GAGTC 2 cut(s) 114, 250
PscI ACATGT 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspPI GGNCC 1 cut(s) 295
PsyI GACNNNGTC 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 3 cut(s) 8, 129, 331
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 1 cut(s) 295
SchI GAGTC 2 cut(s) 114, 251
ScrFI CCNGG 1 cut(s) 150
SetI ASST 9 cut(s) 25, 78, 118, 129, 151, 188, 201, 226, 291
SfaNI GCATC 1 cut(s) 70
SfcI CTRYAG 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 1 cut(s) 5
SseBI AGGCCT 1 cut(s) 15
SsiI CCGC 1 cut(s) 293
SspMI CTAG 1 cut(s) 117
StuI AGGCCT 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 38
TaiI ACGT 1 cut(s) 78
TaqI TCGA 4 cut(s) 72, 86, 99, 272
TasI AATT 1 cut(s) 5
TfiI GAWTC 1 cut(s) 317
Tru1I TTAA 3 cut(s) 8, 129, 331
Tru9I TTAA 3 cut(s) 8, 129, 331
TscAI CASTG 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 159
TspRI CASTG 1 cut(s) 43
Tth111I GACNNNGTC 1 cut(s) 38
XagI CCTNNNNNAGG 1 cut(s) 203
XceI RCATGY 1 cut(s) 236
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.