Rh5CG408800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004869
Physical Location & Seq
Reverse (-)
54877215 .. 54877478
264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG408800.1

Sequence Viewer

Length: 264 bp
ATGGAATTAAAAGGCCTATCACCTTTCTTGGCTGACAGTGTCCCAAATCTGGGCCTTGACAATCTAATCATCGACGTGGATGCTTCGAGTGGCGAACTCGACGCCGATGGTGGACCTAGACTCGAGGTTAAACTCGTTGCATATGAACCTGGACAACAAGTTGGATTTGCCAACGCCGGAATCACCTATCAAGATGACCTTGAAGAGGCAGTCGTCATTCGACCTATAGGCCATGTTGAAAAGCCGGAGAGACTTTCCGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.23

Weight (kDa)

4.16

Isoelectric Point (pI)

26.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 102
AfiI CCNNNNNNNGG 3 cut(s) 49, 50, 205
AgsI TTSAA 2 cut(s) 203, 239
AjiI CACGTC 1 cut(s) 76
AjnI CCWGG 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 244
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 3 cut(s) 13, 52, 229
AspS9I GGNCC 2 cut(s) 52, 113
AsuHPI GGTGA 2 cut(s) 12, 175
AvaI CYCGRG 1 cut(s) 122
AvaII GGWCC 1 cut(s) 113
BccI CCATC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BciT130I CCWGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 1 cut(s) 117
BfmI CTRYAG 1 cut(s) 225
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 113
BmeT110I CYCGRG 1 cut(s) 122
BmgBI CACGTC 1 cut(s) 76
BmgT120I GGNCC 2 cut(s) 52, 113
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 102
BsaWI WCCGGW 1 cut(s) 257
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 50, 205
BseBI CCWGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 3 cut(s) 49, 50, 205
BshFI GGCC 3 cut(s) 15, 54, 231
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 3 cut(s) 177, 245, 258
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 3 cut(s) 49, 50, 205
BsmAI GTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 3 cut(s) 15, 54, 231
BsoBI CYCGRG 1 cut(s) 122
BspANI GGCC 3 cut(s) 15, 54, 231
BssNI GRCGYC 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 38
Bst6I CTCTTC 1 cut(s) 198
BstACI GRCGYC 1 cut(s) 102
BstENI CCTNNNNNAGG 1 cut(s) 203
BstF5I GGATG 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 244
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 1 cut(s) 225
BsuRI GGCC 3 cut(s) 15, 54, 231
BtrI CACGTC 1 cut(s) 76
BtsCI GGATG 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 43
Cfr13I GGNCC 2 cut(s) 52, 113
CseI GACGC 1 cut(s) 110
CviAII CATG 1 cut(s) 233
CviJI RGCY 5 cut(s) 15, 32, 54, 231, 244
CviKI_1 RGCY 5 cut(s) 15, 32, 54, 231, 244
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco147I AGGCCT 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 113
Eco88I CYCGRG 1 cut(s) 122
EcoNI CCTNNNNNAGG 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 148
FaeI CATG 1 cut(s) 236
FaiI YATR 4 cut(s) 142, 144, 227, 234
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FaqI GGGAC 1 cut(s) 26
FatI CATG 1 cut(s) 232
FauNDI CATATG 1 cut(s) 142
FokI GGATG 1 cut(s) 92
FspBI CTAG 1 cut(s) 117
HaeIII GGCC 3 cut(s) 15, 54, 231
HapII CCGG 3 cut(s) 177, 245, 258
HgaI GACGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 1 cut(s) 236
HinfI GANTC 2 cut(s) 120, 180
HpaII CCGG 3 cut(s) 177, 245, 258
HphI GGTGA 2 cut(s) 12, 175
Hpy166II GTNNAC 1 cut(s) 113
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 113
Hpy99I CGWCG 2 cut(s) 77, 104
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 140
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 1 cut(s) 236
LpnPI CCDG 5 cut(s) 35, 135, 162, 190, 258
LweI GCATC 1 cut(s) 70
MaeI CTAG 1 cut(s) 117
MaeII ACGT 1 cut(s) 75
MboII GAAGA 1 cut(s) 215
MluCI AATT 1 cut(s) 5
MlyI GAGTC 1 cut(s) 114
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 2 cut(s) 118, 199
MseI TTAA 2 cut(s) 8, 129
MslI CAYNNNNRTG 1 cut(s) 74
MspI CCGG 3 cut(s) 177, 245, 258
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
NdeI CATATG 1 cut(s) 142
NlaIII CATG 1 cut(s) 236
PaeR7I CTCGAG 1 cut(s) 122
PceI AGGCCT 1 cut(s) 15
PfeI GAWTC 1 cut(s) 180
PflFI GACNNNGTC 1 cut(s) 38
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspPI GGNCC 2 cut(s) 52, 113
PspXI VCTCGAGB 1 cut(s) 122
PsyI GACNNNGTC 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 2 cut(s) 8, 129
Sau96I GGNCC 2 cut(s) 52, 113
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 150
SetI ASST 8 cut(s) 25, 78, 118, 129, 151, 188, 201, 226
SfaNI GCATC 1 cut(s) 70
SfcI CTRYAG 1 cut(s) 225
Sfr274I CTCGAG 1 cut(s) 122
SinI GGWCC 1 cut(s) 113
SlaI CTCGAG 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 1 cut(s) 5
SseBI AGGCCT 1 cut(s) 15
SspMI CTAG 1 cut(s) 117
StuI AGGCCT 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 38
TaiI ACGT 1 cut(s) 78
TaqI TCGA 5 cut(s) 72, 86, 99, 123, 220
TasI AATT 1 cut(s) 5
TfiI GAWTC 1 cut(s) 180
Tru1I TTAA 2 cut(s) 8, 129
Tru9I TTAA 2 cut(s) 8, 129
TscAI CASTG 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 159
TspRI CASTG 1 cut(s) 43
Tth111I GACNNNGTC 1 cut(s) 38
VpaK11BI GGWCC 1 cut(s) 113
XagI CCTNNNNNAGG 1 cut(s) 203
XhoI CTCGAG 1 cut(s) 122
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.