Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004869

Physical Location & Seq

Genomic Coordinates Reverse (-)

49238989 .. 49246393

Gene Structure 7405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG363400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGACCGATTTGGCCAGCGAACTCGACAGCAATGGTGGACTTGGACTCATGGTTGAACTCGTTCTTGGTGAACCTGGAGATGAGATTGGACTTGCCGACGCCGGAGTCGCCAATCAAGACCACCTTGGTGTACCTGGTAGGCAGAGACGCAGACCGATTGTGAGAGCTGAGAGGAAGCTGAAGAATGTGAATGACTTCTACGTGCTGACACATGCAAGAGATTGGTGCACATCTTCTTTGCTCAATGTGGAACATCAAAGAGGAATCGCAAATTGGATACAAGATAAAGAACAAGTAGAGAAGCTATGCTCAGCTTCATTTAGATTTGGGACTAAGAATGGAATTCTCCGGAAATGGATTTCAAGGTTTGATGTCTGGCCTTACTTGGAGACCTTTGCAGAGGATGCATCAAATGAAATTGCTGCTGAGCTACAGGGTGTTCCAGATCTGATCATTGGAAACTGCAGTGATGGAAATCTTGTTGCAACTTTGTTATCTTATAAACTAGGAATCACACAGTGCAACATTGCTCATGCATTGGAGAAGACAAAGTACCCAGATTCTGATATATTTTGGAAAAGCTATGAGGACAAGTTGGTGTGCGAGGACATAACTGGGGGTCTAGAGGATATTGCCATTCCAGCTAGCAATTTGGTCGATGATCCGCCTGTTGCTTTGCCAGTTGATGTTGTAAATATGGTTATCTTATCAAGCATAAAGGAGTTAAGGCTTAAAGATGCTGGTGCATTGTTTTCACTTATTTGTGAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0006073 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009311 GO:0009505 GO:0009628 GO:0009791 GO:0009987 GO:0010154 GO:0010431 GO:0016020 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0021700 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0035251 GO:0036293 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070482 GO:0071695 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

257

Amino Acids

28.32

Weight (kDa)

4.71

Isoelectric Point (pI)

31.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GT-B_Sucrose_synth	PF00862	108 - 199	6.7e-44	Sucrose synthase first GT-B domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004869)

Species	Orthologous Gene IDs
malus_domestica	MD11G1092200.v1.1 MD14G1207400.v1.1
pyrus_communis	pycom04g09480
rosa_laevigata	RLG00000002647 RLG00000003273 RLG00000004832 RLG00000020604 RLG00000023106 RLG00000025072 RLG00000032712 RLG00000036050
rosa_multiflora	Rmu_sc0008535.1_g000001
rosa_rugosa	Rorug03G0293800
rosa_samantha	Rh1AG358000 Rh1AG401600 Rh1BG223000 Rh1DG249900 Rh2CG166900 Rh2CG363400 Rh2DG386200 Rh3AG118400 Rh3BG123400 Rh3CG125100 Rh4BG086300 Rh5CG386900 Rh5CG408800 Rh5DG398800 Rh7BG143300 Rh7BG206700 Rh7CG109800 Rh7DG395600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	501
AasI	GACNNNNNNGTC	1 cut(s)	104
AccIII	TCCGGA	1 cut(s)	348
AciI	CCGC	1 cut(s)	665
AclWI	GGATC	1 cut(s)	656
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	342
AcuI	CTGAAG	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	99
AdeI	CACNNNGTG	1 cut(s)	519
AfaI	GTAC	2 cut(s)	132, 554
AgsI	TTSAA	2 cut(s)	56, 363
AjnI	CCWGG	2 cut(s)	73, 133
AjuI	GAANNNNNNNTTGG	4 cut(s)	48, 80, 256, 288
AleI	CACNNNNGTG	1 cut(s)	126
AluBI	AGCT	7 cut(s)	167, 178, 304, 314, 430, 582, 644
AluI	AGCT	7 cut(s)	167, 178, 304, 314, 430, 582, 644
Alw21I	GWGCWC	1 cut(s)	230
Alw26I	GTCTC	2 cut(s)	139, 383
Alw44I	GTGCAC	1 cut(s)	226
AlwI	GGATC	1 cut(s)	656
AlwNI	CAGNNNCTG	1 cut(s)	563
Aor13HI	TCCGGA	1 cut(s)	348
AoxI	GGCC	2 cut(s)	12, 377
ApaLI	GTGCAC	1 cut(s)	226
ApeKI	GCWGC	1 cut(s)	422
ApoI	RAATTY	1 cut(s)	342
Asp700I	GAANNNNTTC	2 cut(s)	60, 194
AsuHPI	GGTGA	1 cut(s)	80
AsuNHI	GCTAGC	1 cut(s)	644
BaeGI	GKGCMC	1 cut(s)	230
BalI	TGGCCA	1 cut(s)	14
BarI	GAAGNNNNNNTAC	2 cut(s)	536, 568
BbsI	GAAGAC	1 cut(s)	551
Bbv12I	GWGCWC	1 cut(s)	230
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	1 cut(s)	464
BcgI	CGANNNNNNTGC	2 cut(s)	637, 671
BciT130I	CCWGG	2 cut(s)	75, 135
BciVI	GTATCC	1 cut(s)	270
BclI	TGATCA	1 cut(s)	450
BcoDI	GTCTC	2 cut(s)	139, 383
BfaI	CTAG	3 cut(s)	506, 623, 645
BfmI	CTRYAG	2 cut(s)	431, 463
BfuI	GTATCC	1 cut(s)	270
BglII	AGATCT	1 cut(s)	445
BisI	GCNGC	1 cut(s)	423
BlpI	GCTNAGC	2 cut(s)	310, 426
BlsI	GCNGC	1 cut(s)	424
Bme1390I	CCNGG	2 cut(s)	75, 135
BmrFI	CCNGG	2 cut(s)	75, 135
BmrI	ACTGGG	1 cut(s)	624
BmsI	GCATC	3 cut(s)	394, 416, 727
BmtI	GCTAGC	1 cut(s)	648
BmuI	ACTGGG	1 cut(s)	624
BpiI	GAAGAC	1 cut(s)	551
BpmI	CTGGAG	1 cut(s)	96
Bpu1102I	GCTNAGC	2 cut(s)	310, 426
BsaAI	YACGTR	1 cut(s)	202
BsaBI	GATNNNNATC	1 cut(s)	474
BsaHI	GRCGYC	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	1 cut(s)	124
BsaWI	WCCGGW	1 cut(s)	348
Bse1I	ACTGG	2 cut(s)	619, 680
Bse3DI	GCAATG	2 cut(s)	37, 525
Bse8I	GATNNNNATC	1 cut(s)	474
BseAI	TCCGGA	1 cut(s)	348
BseBI	CCWGG	2 cut(s)	75, 135
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	1 cut(s)	409
BseJI	GATNNNNATC	1 cut(s)	474
BseMI	GCAATG	2 cut(s)	37, 525
BseMII	CTCAG	3 cut(s)	159, 324, 417
BseNI	ACTGG	2 cut(s)	619, 680
BseSI	GKGCMC	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	409
BshFI	GGCC	2 cut(s)	14, 379
BsiHKAI	GWGCWC	1 cut(s)	230
BsiSI	CCGG	2 cut(s)	102, 349
BslFI	GGGAC	1 cut(s)	343
BsmAI	GTCTC	2 cut(s)	139, 383
BsmBI	CGTCTC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	343
BsnI	GGCC	2 cut(s)	14, 379
Bso31I	GGTCTC	1 cut(s)	383
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp13I	TCCGGA	1 cut(s)	348
Bsp143I	GATC	3 cut(s)	445, 450, 661
Bsp1720I	GCTNAGC	2 cut(s)	310, 426
BspACI	CCGC	1 cut(s)	665
BspANI	GGCC	2 cut(s)	14, 379
BspCNI	CTCAG	3 cut(s)	160, 323, 418
BspEI	TCCGGA	1 cut(s)	348
BspMAI	CTGCAG	1 cut(s)	467
BspOI	GCTAGC	1 cut(s)	648
BspPI	GGATC	1 cut(s)	656
BspTNI	GGTCTC	1 cut(s)	383
BsrDI	GCAATG	2 cut(s)	37, 525
BsrI	ACTGG	2 cut(s)	619, 680
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	3 cut(s)	445, 450, 661
BssNI	GRCGYC	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	124
Bst2UI	CCWGG	2 cut(s)	75, 135
Bst4CI	ACNGT	1 cut(s)	519
BstACI	GRCGYC	1 cut(s)	99
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstBAI	YACGTR	1 cut(s)	202
BstC8I	GCNNGC	2 cut(s)	16, 646
BstDEI	CTNAG	4 cut(s)	168, 310, 333, 426
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	3 cut(s)	448, 453, 664
BstMAI	GTCTC	2 cut(s)	139, 383
BstMBI	GATC	3 cut(s)	445, 450, 661
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 404, 641
BstNI	CCWGG	2 cut(s)	75, 135
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	2 cut(s)	73, 133
BstSFI	CTRYAG	2 cut(s)	431, 463
BstSLI	GKGCMC	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	409
BstV2I	GAAGAC	1 cut(s)	551
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BsuI	GTATCC	1 cut(s)	270
BsuRI	GGCC	2 cut(s)	14, 379
BtsCI	GGATG	1 cut(s)	409
BtsI	GCAGTG	1 cut(s)	472
BtsIMutI	CAGTG	2 cut(s)	472, 524
Cac8I	GCNNGC	2 cut(s)	16, 646
CaiI	CAGNNNCTG	1 cut(s)	563
CseI	GACGC	2 cut(s)	107, 156
CsiI	ACCWGGT	1 cut(s)	133
Csp6I	GTAC	2 cut(s)	131, 553
CviAII	CATG	3 cut(s)	49, 212, 533
CviQI	GTAC	2 cut(s)	131, 553
DdeI	CTNAG	4 cut(s)	168, 310, 333, 426
DpnI	GATC	3 cut(s)	447, 452, 663
DpnII	GATC	3 cut(s)	445, 450, 661
DraIII	CACNNNGTG	1 cut(s)	519
DrdI	GACNNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	104
EaeI	YGGCCR	1 cut(s)	12
EciI	GGCGGA	1 cut(s)	654
Eco130I	CCWWGG	1 cut(s)	124
Eco31I	GGTCTC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	200
EcoRI	GAATTC	1 cut(s)	342
EcoRII	CCWGG	2 cut(s)	73, 133
EcoT14I	CCWWGG	1 cut(s)	124
EcoT22I	ATGCAT	2 cut(s)	409, 538
ErhI	CCWWGG	1 cut(s)	124
Esp3I	CGTCTC	1 cut(s)	139
FaeI	CATG	3 cut(s)	52, 215, 536
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	3 cut(s)	48, 211, 532
FbaI	TGATCA	1 cut(s)	450
Fnu4HI	GCNGC	1 cut(s)	423
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	1 cut(s)	423
FspBI	CTAG	3 cut(s)	506, 623, 645
GluI	GCNGC	1 cut(s)	423
GsuI	CTGGAG	1 cut(s)	96
HaeIII	GGCC	2 cut(s)	14, 379
HapII	CCGG	2 cut(s)	102, 349
HgaI	GACGC	2 cut(s)	107, 156
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	3 cut(s)	52, 215, 536
HinfI	GANTC	5 cut(s)	45, 105, 264, 510, 560
HpaII	CCGG	2 cut(s)	102, 349
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	4 cut(s)	38, 71, 131, 228
Hpy188I	TCNGA	2 cut(s)	450, 565
Hpy188III	TCNNGA	4 cut(s)	116, 349, 443, 623
Hpy8I	GTNNAC	4 cut(s)	38, 71, 131, 228
Hpy99I	CGWCG	1 cut(s)	101
HpyCH4III	ACNGT	1 cut(s)	519
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	9 cut(s)	215, 228, 398, 407, 465, 485, 522, 536, 746
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 404, 641
HpyF3I	CTNAG	4 cut(s)	168, 310, 333, 426
HpySE526I	ACGT	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	3 cut(s)	52, 215, 536
Kpn2I	TCCGGA	1 cut(s)	348
Ksp22I	TGATCA	1 cut(s)	450
Kzo9I	GATC	3 cut(s)	445, 450, 661
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	3 cut(s)	394, 416, 727
MabI	ACCWGGT	1 cut(s)	133
MaeI	CTAG	3 cut(s)	506, 623, 645
MaeII	ACGT	1 cut(s)	201
MalI	GATC	3 cut(s)	447, 452, 663
MboI	GATC	3 cut(s)	445, 450, 661
MboII	GAAGA	3 cut(s)	193, 225, 556
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	1 cut(s)	230
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	4 cut(s)	271, 342, 417, 649
MluNI	TGGCCA	1 cut(s)	14
MlyI	GAGTC	2 cut(s)	39, 114
MnlI	CCTC	7 cut(s)	165, 254, 394, 580, 598, 619, 760
Mox20I	TGGCCA	1 cut(s)	14
Mph1103I	ATGCAT	2 cut(s)	409, 538
MroI	TCCGGA	1 cut(s)	348
MroXI	GAANNNNTTC	2 cut(s)	60, 194
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	2 cut(s)	725, 732
MslI	CAYNNNNRTG	1 cut(s)	126
Msp20I	TGGCCA	1 cut(s)	14
MspI	CCGG	2 cut(s)	102, 349
MspR9I	CCNGG	2 cut(s)	75, 135
MvaI	CCWGG	2 cut(s)	75, 135
MwoI	GCNNNNNNNGC	3 cut(s)	107, 404, 641
NdeII	GATC	3 cut(s)	445, 450, 661
NheI	GCTAGC	1 cut(s)	644
NlaIII	CATG	3 cut(s)	52, 215, 536
NsiI	ATGCAT	2 cut(s)	409, 538
NspI	RCATGY	1 cut(s)	215
OliI	CACNNNNGTG	1 cut(s)	126
PdmI	GAANNNNTTC	2 cut(s)	60, 194
PfeI	GAWTC	3 cut(s)	264, 510, 560
PkrI	GCNGC	1 cut(s)	424
PleI	GAGTC	2 cut(s)	39, 113
PpsI	GAGTC	2 cut(s)	39, 113
Ppu21I	YACGTR	1 cut(s)	202
PsiI	TTATAA	1 cut(s)	501
Psp6I	CCWGG	2 cut(s)	73, 133
PspGI	CCWGG	2 cut(s)	73, 133
PstI	CTGCAG	1 cut(s)	467
PstNI	CAGNNNCTG	1 cut(s)	563
PsuI	RGATCY	1 cut(s)	445
RsaI	GTAC	2 cut(s)	132, 554
RsaNI	GTAC	2 cut(s)	131, 553
RseI	CAYNNNNRTG	1 cut(s)	126
SaqAI	TTAA	2 cut(s)	725, 732
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	3 cut(s)	445, 450, 661
SchI	GAGTC	2 cut(s)	39, 114
ScrFI	CCNGG	2 cut(s)	75, 135
SduI	GDGCHC	1 cut(s)	230
SexAI	ACCWGGT	1 cut(s)	133
SfaNI	GCATC	3 cut(s)	394, 416, 727
SfcI	CTRYAG	2 cut(s)	431, 463
SmiMI	CAYNNNNRTG	1 cut(s)	126
Sse9I	AATT	4 cut(s)	271, 342, 417, 649
SsiI	CCGC	1 cut(s)	665
SspMI	CTAG	3 cut(s)	506, 623, 645
StyD4I	CCNGG	2 cut(s)	73, 133
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	1 cut(s)	519
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	2 cut(s)	24, 657
TaqII	GACCGA	2 cut(s)	20, 169
TasI	AATT	4 cut(s)	271, 342, 417, 649
TfiI	GAWTC	3 cut(s)	264, 510, 560
Tru1I	TTAA	2 cut(s)	725, 732
Tru9I	TTAA	2 cut(s)	725, 732
TscAI	CASTG	2 cut(s)	472, 524
TseI	GCWGC	1 cut(s)	422
TspDTI	ATGAA	2 cut(s)	306, 429
TspRI	CASTG	2 cut(s)	472, 524
VneI	GTGCAC	1 cut(s)	226
XapI	RAATTY	1 cut(s)	342
XbaI	TCTAGA	1 cut(s)	622
XceI	RCATGY	1 cut(s)	215
XmnI	GAANNNNTTC	2 cut(s)	60, 194
XspI	CTAG	3 cut(s)	506, 623, 645
Zsp2I	ATGCAT	2 cut(s)	409, 538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.