pycom04g09480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0004869
Physical Location & Seq
Reverse (-)
12097280 .. 12097748
469 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g09480.3

Sequence Viewer

Length: 273 bp
ATGCAATCTATGCATACAGCTCACCAAAAAAGGTTGTATGCTACAGCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTGTTCTTGTGCTCGATGAGGAGGGTCCGAGTCTGAAACTTGACACTGATGGTGGCCATGGAGTCCAAGCTAAACTCGTTTCGATAATATCTAGCCAGAATCTGAAACTTGCCCACCGCAGAGTCACCTATCAGTACCACCTTGAACACATACGGAGATGCAGATCGATCGAACCTGGAGATGCAGAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.43

Weight (kDa)

6.59

Isoelectric Point (pI)

60.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 196
AcoI YGGCCR 1 cut(s) 133
AcuI CTGAAG 1 cut(s) 69
AfaI GTAC 1 cut(s) 215
AgsI TTSAA 1 cut(s) 224
AjnI CCWGG 1 cut(s) 253
AluBI AGCT 4 cut(s) 20, 47, 149, 268
AluI AGCT 4 cut(s) 20, 47, 149, 268
Alw21I GWGCWC 1 cut(s) 93
AlwNI CAGNNNCTG 1 cut(s) 181
AoxI GGCC 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 14, 196
AvaII GGWCC 1 cut(s) 104
BalI TGGCCA 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 93
BccI CCATC 1 cut(s) 122
BcgI CGANNNNNNTGC 2 cut(s) 229, 263
BciT130I CCWGG 1 cut(s) 255
BfaI CTAG 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 255
BmsI GCATC 2 cut(s) 227, 250
Bsa29I ATCGAT 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 136
Bse8I GATNNNNATC 1 cut(s) 241
BseBI CCWGG 1 cut(s) 255
BseCI ATCGAT 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 136
BseJI GATNNNNATC 1 cut(s) 241
BseRI GAGGAG 1 cut(s) 113
Bsh1285I CGRYCG 1 cut(s) 249
BshFI GGCC 1 cut(s) 135
BshVI ATCGAT 1 cut(s) 245
BsiEI CGRYCG 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 93
BsnI GGCC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 2 cut(s) 242, 246
Bsp19I CCATGG 1 cut(s) 136
BspACI CCGC 1 cut(s) 196
BspANI GGCC 1 cut(s) 135
BspDI ATCGAT 1 cut(s) 245
BspLI GGNNCC 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 2 cut(s) 242, 246
BssT1I CCWWGG 1 cut(s) 136
Bst2UI CCWGG 1 cut(s) 255
Bst6I CTCTTC 1 cut(s) 45
BstAPI GCANNNNNTGC 1 cut(s) 10
BstDSI CCRYGG 1 cut(s) 136
BstKTI GATC 2 cut(s) 245, 249
BstMBI GATC 2 cut(s) 242, 246
BstMCI CGRYCG 1 cut(s) 249
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 253
BstSFI CTRYAG 1 cut(s) 42
Bsu15I ATCGAT 1 cut(s) 245
BsuRI GGCC 1 cut(s) 135
BsuTUI ATCGAT 1 cut(s) 245
BtgI CCRYGG 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 123
CaiI CAGNNNCTG 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 104
ClaI ATCGAT 1 cut(s) 245
Csp6I GTAC 1 cut(s) 214
CviAII CATG 1 cut(s) 137
CviJI RGCY 6 cut(s) 20, 47, 135, 149, 174, 268
CviKI_1 RGCY 6 cut(s) 20, 47, 135, 149, 174, 268
CviQI GTAC 1 cut(s) 214
DpnI GATC 2 cut(s) 244, 248
DpnII GATC 2 cut(s) 242, 246
EaeI YGGCCR 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 136
EcoT22I ATGCAT 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 1 cut(s) 140
FaiI YATR 5 cut(s) 11, 15, 39, 138, 230
FatI CATG 1 cut(s) 136
FspBI CTAG 1 cut(s) 171
HaeIII GGCC 1 cut(s) 135
Hin1II CATG 1 cut(s) 140
HinfI GANTC 4 cut(s) 109, 141, 178, 201
HphI GGTGA 2 cut(s) 14, 196
Hpy188I TCNGA 3 cut(s) 108, 114, 183
HpyCH4V TGCA 4 cut(s) 4, 13, 240, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
Hsp92II CATG 1 cut(s) 140
Kzo9I GATC 2 cut(s) 242, 246
LpnPI CCDG 3 cut(s) 188, 240, 267
LweI GCATC 2 cut(s) 227, 250
MaeI CTAG 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 202
MalI GATC 2 cut(s) 244, 248
MboI GATC 2 cut(s) 242, 246
MboII GAAGA 1 cut(s) 62
MhlI GDGCHC 1 cut(s) 93
MlsI TGGCCA 1 cut(s) 135
MluNI TGGCCA 1 cut(s) 135
MlyI GAGTC 3 cut(s) 118, 150, 210
MnlI CCTC 2 cut(s) 91, 94
Mox20I TGGCCA 1 cut(s) 135
Mph1103I ATGCAT 1 cut(s) 15
MscI TGGCCA 1 cut(s) 135
Msp20I TGGCCA 1 cut(s) 135
MspA1I CMGCKG 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 1 cut(s) 10
NcoI CCATGG 1 cut(s) 136
NdeII GATC 2 cut(s) 242, 246
NlaIII CATG 1 cut(s) 140
NlaIV GGNNCC 1 cut(s) 105
NmuCI GTSAC 1 cut(s) 202
NsiI ATGCAT 1 cut(s) 15
PfeI GAWTC 1 cut(s) 178
Ple19I CGATCG 1 cut(s) 249
PleI GAGTC 3 cut(s) 117, 149, 209
PpsI GAGTC 3 cut(s) 117, 149, 209
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 1 cut(s) 104
PstNI CAGNNNCTG 1 cut(s) 181
PvuI CGATCG 1 cut(s) 249
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
Sau3AI GATC 2 cut(s) 242, 246
Sau96I GGNCC 1 cut(s) 104
SchI GAGTC 3 cut(s) 118, 150, 210
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 1 cut(s) 93
SetI ASST 8 cut(s) 22, 35, 49, 151, 209, 222, 256, 270
SfaNI GCATC 2 cut(s) 227, 250
SfcI CTRYAG 1 cut(s) 42
SinI GGWCC 1 cut(s) 104
SsiI CCGC 1 cut(s) 196
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 253
StyI CCWWGG 1 cut(s) 136
TaqI TCGA 4 cut(s) 93, 161, 245, 249
TfiI GAWTC 1 cut(s) 178
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 1 cut(s) 202
Tsp45I GTSAC 1 cut(s) 202
TspGWI ACGGA 1 cut(s) 247
TspRI CASTG 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 104
XspI CTAG 1 cut(s) 171
Zsp2I ATGCAT 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.