RLG00000003273

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004869
Physical Location & Seq
Reverse (-)
46412852 .. 46413282
431 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003273

Sequence Viewer

Length: 306 bp
ATGGAATTGAAAAGCTTATCACATTTCTTGGCTGGCGGTGTCCCAAATCTGGGCCTTGACGATCTAATCATCGACGTGGATGCTCTGGGTGGCAAAATCGACACCAATAGTGGACTTAGACTTGAGGTTGAACTCATTGCGCATGAACCTGGACAACAAATCGGATTTGCTGATATCAGAATGGCCGATCAAGACGACCTTGAAGTGGTGAGGTGGAGGAAGAGGCGATGGTGGCGGTGGAGGAAGGGTGCTGCTGGAGCCGAGCTAGATGGTGAGGAAGGGAGTTGCCGGAGCCGAGGGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.21

Weight (kDa)

5.11

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 141
AciI CCGC 2 cut(s) 36, 235
AcoI YGGCCR 1 cut(s) 183
AfiI CCNNNNNNNGG 3 cut(s) 49, 50, 205
AgsI TTSAA 3 cut(s) 10, 131, 203
AjiI CACGTC 1 cut(s) 76
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 2 cut(s) 15, 265
AluI AGCT 2 cut(s) 15, 265
AoxI GGCC 2 cut(s) 52, 183
ApeKI GCWGC 1 cut(s) 251
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 1 cut(s) 52
AsuHPI GGTGA 2 cut(s) 220, 284
BbvI GCAGC 1 cut(s) 238
BccI CCATC 2 cut(s) 222, 263
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BciT130I CCWGG 1 cut(s) 150
BfaI CTAG 1 cut(s) 266
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 150
BmgBI CACGTC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 2 cut(s) 259, 293
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 295
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 50, 205
Bse3DI GCAATG 1 cut(s) 135
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 3 cut(s) 49, 50, 205
BseMI GCAATG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 238
BshFI GGCC 2 cut(s) 54, 185
BsiSI CCGG 1 cut(s) 289
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 3 cut(s) 49, 50, 205
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 2 cut(s) 54, 185
Bsp143I GATC 2 cut(s) 61, 187
BspACI CCGC 2 cut(s) 36, 235
BspANI GGCC 2 cut(s) 54, 185
BspLI GGNNCC 2 cut(s) 259, 293
BsrDI GCAATG 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 2 cut(s) 61, 187
Bst2UI CCWGG 1 cut(s) 150
Bst6I CTCTTC 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 85
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 2 cut(s) 64, 190
BstMBI GATC 2 cut(s) 61, 187
BstMWI GCNNNNNNNGC 2 cut(s) 232, 257
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 238
BsuRI GGCC 2 cut(s) 54, 185
BtgZI GCGATG 1 cut(s) 241
BtrI CACGTC 1 cut(s) 76
BtsCI GGATG 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 34
CfoI GCGC 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 52
CviAII CATG 2 cut(s) 143, 303
CviJI RGCY 7 cut(s) 15, 32, 54, 185, 260, 265, 294
CviKI_1 RGCY 7 cut(s) 15, 32, 54, 185, 260, 265, 294
DdeI CTNAG 1 cut(s) 116
DpnI GATC 2 cut(s) 63, 189
DpnII GATC 2 cut(s) 61, 187
EaeI YGGCCR 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco32I GATATC 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 148
EcoRV GATATC 1 cut(s) 175
FaeI CATG 2 cut(s) 146, 306
FaiI YATR 2 cut(s) 144, 304
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FaqI GGGAC 1 cut(s) 26
FatI CATG 2 cut(s) 142, 302
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 1 cut(s) 266
FspI TGCGCA 1 cut(s) 141
GlaI GCGC 1 cut(s) 141
GluI GCNGC 1 cut(s) 252
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 2 cut(s) 54, 185
HapII CCGG 1 cut(s) 289
HhaI GCGC 1 cut(s) 142
Hin1II CATG 2 cut(s) 146, 306
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HindIII AAGCTT 1 cut(s) 13
HpaII CCGG 1 cut(s) 289
HphI GGTGA 2 cut(s) 220, 284
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 164, 179
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 113
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 2 cut(s) 238, 272
HpyCH4IV ACGT 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 2 cut(s) 232, 257
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 2 cut(s) 146, 306
HspAI GCGC 1 cut(s) 140
Kzo9I GATC 2 cut(s) 61, 187
LmnI GCTCC 2 cut(s) 257, 291
LpnPI CCDG 7 cut(s) 18, 35, 71, 135, 162, 240, 302
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 1 cut(s) 70
MaeI CTAG 1 cut(s) 266
MaeII ACGT 1 cut(s) 75
MalI GATC 2 cut(s) 63, 189
MboI GATC 2 cut(s) 61, 187
MboII GAAGA 1 cut(s) 232
MluCI AATT 1 cut(s) 5
MnlI CCTC 7 cut(s) 118, 204, 210, 216, 234, 268, 290
MslI CAYNNNNRTG 1 cut(s) 74
MspI CCGG 1 cut(s) 289
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
MwoI GCNNNNNNNGC 2 cut(s) 232, 257
NdeII GATC 2 cut(s) 61, 187
NlaIII CATG 2 cut(s) 146, 306
NlaIV GGNNCC 2 cut(s) 259, 293
NmeAIII GCCGAG 1 cut(s) 286
NsbI TGCGCA 1 cut(s) 141
PkrI GCNGC 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 2 cut(s) 259, 293
PspPI GGNCC 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 74
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 2 cut(s) 61, 187
Sau96I GGNCC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 150
SetI ASST 7 cut(s) 17, 78, 129, 151, 201, 215, 267
SfaNI GCATC 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 1 cut(s) 5
SsiI CCGC 2 cut(s) 36, 235
SspMI CTAG 1 cut(s) 266
StyD4I CCNGG 1 cut(s) 148
TaiI ACGT 1 cut(s) 78
TaqI TCGA 2 cut(s) 72, 99
TasI AATT 1 cut(s) 5
TseI GCWGC 1 cut(s) 251
TspDTI ATGAA 1 cut(s) 159
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.