Rh1AG401600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004869
Physical Location & Seq
Forward (+)
62828036 .. 62828368
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG401600.1

Sequence Viewer

Length: 333 bp
ATGGAATTGAAAGGCTTATCACATTTCTTGGCCAGGGGTGTCCCAAATCTGGGCCTTGACGATCTAATCATCGACATGGATGCTCCGGGTGGAAAACTTGACGCCGATGGTGGAGTTAGACTCAAGGTTGAACTTGTTGAGCATGAACCTGGACAACAAATCCTATTTGCCGATGCCGGAATCGCCGATCAAGACGACCTTGAAGTGGTAGTCGTCGCCCGACCTGTAGGCCATGTCGAAGAGCCGGAGAGACTTTCCGGTTGGAGATTTTTGATTGGAGATGAAGAGGTTGTGTGCCTTGTCGTCGTCGTCGGAGAATCAGTGCTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.81

Weight (kDa)

4.26

Isoelectric Point (pI)

27.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 30
AcyI GRCGYC 1 cut(s) 102
AfiI CCNNNNNNNGG 3 cut(s) 49, 50, 205
AgsI TTSAA 3 cut(s) 10, 131, 203
AjnI CCWGG 2 cut(s) 32, 148
Alw26I GTCTC 1 cut(s) 244
AoxI GGCC 3 cut(s) 30, 52, 229
AspS9I GGNCC 1 cut(s) 52
AsuC2I CCSGG 1 cut(s) 87
BalI TGGCCA 1 cut(s) 32
BccI CCATC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BciT130I CCWGG 2 cut(s) 34, 150
BcnI CCSGG 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 244
BfmI CTRYAG 1 cut(s) 225
Bme1390I CCNGG 3 cut(s) 34, 87, 150
BmgT120I GGNCC 1 cut(s) 52
BmrFI CCNGG 3 cut(s) 34, 87, 150
BmsI GCATC 2 cut(s) 70, 163
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 33
BsaWI WCCGGW 1 cut(s) 257
BsaXI ACNNNNNCTCC 1 cut(s) 306
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 50, 205
BseBI CCWGG 2 cut(s) 34, 150
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 3 cut(s) 49, 50, 205
BshFI GGCC 3 cut(s) 32, 54, 231
BsiSI CCGG 4 cut(s) 86, 177, 245, 258
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 3 cut(s) 49, 50, 205
BsmAI GTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 3 cut(s) 32, 54, 231
Bsp143I GATC 2 cut(s) 61, 187
BspANI GGCC 3 cut(s) 32, 54, 231
BspQI GCTCTTC 1 cut(s) 234
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 2 cut(s) 61, 187
BssNI GRCGYC 1 cut(s) 102
Bst2UI CCWGG 2 cut(s) 34, 150
Bst6I CTCTTC 2 cut(s) 234, 279
BstACI GRCGYC 1 cut(s) 102
BstF5I GGATG 1 cut(s) 85
BstKTI GATC 2 cut(s) 64, 190
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 2 cut(s) 61, 187
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 2 cut(s) 34, 150
BstSCI CCNGG 3 cut(s) 32, 85, 148
BstSFI CTRYAG 1 cut(s) 225
BsuRI GGCC 3 cut(s) 32, 54, 231
BtsCI GGATG 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 327
Cfr13I GGNCC 1 cut(s) 52
CseI GACGC 1 cut(s) 110
CviAII CATG 3 cut(s) 76, 143, 233
CviJI RGCY 5 cut(s) 15, 32, 54, 231, 244
CviKI_1 RGCY 5 cut(s) 15, 32, 54, 231, 244
DpnI GATC 2 cut(s) 63, 189
DpnII GATC 2 cut(s) 61, 187
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 2 cut(s) 234, 279
EarI CTCTTC 2 cut(s) 234, 279
EcoRII CCWGG 2 cut(s) 32, 148
FaeI CATG 3 cut(s) 79, 146, 236
FaiI YATR 3 cut(s) 77, 144, 234
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FaqI GGGAC 1 cut(s) 26
FatI CATG 3 cut(s) 75, 142, 232
FokI GGATG 1 cut(s) 92
HaeIII GGCC 3 cut(s) 32, 54, 231
HapII CCGG 4 cut(s) 86, 177, 245, 258
HgaI GACGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 3 cut(s) 79, 146, 236
HinfI GANTC 3 cut(s) 120, 180, 317
HpaII CCGG 4 cut(s) 86, 177, 245, 258
Hpy188I TCNGA 1 cut(s) 314
Hpy188III TCNNGA 1 cut(s) 191
Hpy99I CGWCG 4 cut(s) 218, 308, 311, 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 3 cut(s) 79, 146, 236
Kzo9I GATC 2 cut(s) 61, 187
LguI GCTCTTC 1 cut(s) 234
LmnI GCTCC 1 cut(s) 88
LweI GCATC 2 cut(s) 70, 163
MalI GATC 2 cut(s) 63, 189
MboI GATC 2 cut(s) 61, 187
MboII GAAGA 2 cut(s) 251, 296
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 32
MlyI GAGTC 1 cut(s) 114
MmeI TCCRAC 2 cut(s) 242, 292
MnlI CCTC 1 cut(s) 280
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MslI CAYNNNNRTG 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 32
MspI CCGG 4 cut(s) 86, 177, 245, 258
MspR9I CCNGG 3 cut(s) 34, 87, 150
MvaI CCWGG 2 cut(s) 34, 150
MwoI GCNNNNNNNGC 1 cut(s) 182
NciI CCSGG 1 cut(s) 87
NdeII GATC 2 cut(s) 61, 187
NlaIII CATG 3 cut(s) 79, 146, 236
PciSI GCTCTTC 1 cut(s) 234
PfeI GAWTC 2 cut(s) 180, 317
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
Psp6I CCWGG 2 cut(s) 32, 148
PspGI CCWGG 2 cut(s) 32, 148
PspPI GGNCC 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 74
SapI GCTCTTC 1 cut(s) 234
Sau3AI GATC 2 cut(s) 61, 187
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 3 cut(s) 34, 87, 150
SetI ASST 5 cut(s) 129, 151, 201, 226, 291
SfaNI GCATC 2 cut(s) 70, 163
SfcI CTRYAG 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 1 cut(s) 5
StyD4I CCNGG 3 cut(s) 32, 85, 148
TaqI TCGA 2 cut(s) 72, 237
TasI AATT 1 cut(s) 5
TfiI GAWTC 2 cut(s) 180, 317
TscAI CASTG 1 cut(s) 327
TspDTI ATGAA 2 cut(s) 159, 297
TspRI CASTG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.