RLG00000036050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004869
Physical Location & Seq
Forward (+)
75316985 .. 75317415
431 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036050

Sequence Viewer

Length: 306 bp
ATGGAATTGAAAAGCTTATCACATTTCTTGGCCGACGGTGTCCCAAATCTAGGCCTTGACGATCTAATCATCGACATGGATGCTCCGGGTGGCAAACTCGACACCAATAGTGGACTTAGACTCGAGGTTGAACTCATTGCTCATGAACCTGGACAACAAATCGGATTTGCCGATACCGAAATGGCCGATCAAGACGACCTTGAAGTGGTGAGGTGGAGGAAGAGGCGATGGTGGCAGTGGAGGAAGGGTGCTTCCGGAGCCGAGCTACATGGTGAGGAAGGGAGCTGCCGGAGCCGAGGCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.26

Weight (kDa)

4.82

Isoelectric Point (pI)

41.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 254
AcoI YGGCCR 2 cut(s) 30, 183
AfiI CCNNNNNNNGG 2 cut(s) 50, 205
AgsI TTSAA 3 cut(s) 10, 131, 203
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 3 cut(s) 15, 265, 285
AluI AGCT 3 cut(s) 15, 265, 285
Ama87I CYCGRG 1 cut(s) 122
Aor13HI TCCGGA 1 cut(s) 254
AoxI GGCC 3 cut(s) 30, 52, 183
ApeKI GCWGC 1 cut(s) 285
AspLEI GCGC 1 cut(s) 302
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 2 cut(s) 220, 284
AvaI CYCGRG 1 cut(s) 122
BbvI GCAGC 1 cut(s) 272
BccI CCATC 1 cut(s) 222
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BciT130I CCWGG 1 cut(s) 150
BcnI CCSGG 1 cut(s) 87
BfaI CTAG 1 cut(s) 50
BisI GCNGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 287
Bme1390I CCNGG 2 cut(s) 87, 150
BmeT110I CYCGRG 1 cut(s) 122
BmiI GGNNCC 2 cut(s) 259, 293
BmrFI CCNGG 2 cut(s) 87, 150
BmsI GCATC 1 cut(s) 70
BpuMI CCSGG 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 295
BsaWI WCCGGW 1 cut(s) 254
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 205
Bse3DI GCAATG 1 cut(s) 135
BseAI TCCGGA 1 cut(s) 254
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 2 cut(s) 50, 205
BseMI GCAATG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 272
BshFI GGCC 3 cut(s) 32, 54, 185
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 3 cut(s) 86, 255, 289
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 2 cut(s) 50, 205
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 3 cut(s) 32, 54, 185
BsoBI CYCGRG 1 cut(s) 122
Bsp13I TCCGGA 1 cut(s) 254
Bsp143I GATC 2 cut(s) 61, 187
BspANI GGCC 3 cut(s) 32, 54, 185
BspEI TCCGGA 1 cut(s) 254
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 2 cut(s) 259, 293
BsrDI GCAATG 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 2 cut(s) 61, 187
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 38
Bst6I CTCTTC 1 cut(s) 215
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 85
BstHHI GCGC 1 cut(s) 302
BstKTI GATC 2 cut(s) 64, 190
BstMBI GATC 2 cut(s) 61, 187
BstMWI GCNNNNNNNGC 3 cut(s) 232, 257, 291
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 2 cut(s) 85, 148
BstV1I GCAGC 1 cut(s) 272
BsuRI GGCC 3 cut(s) 32, 54, 185
BtgZI GCGATG 1 cut(s) 241
BtsCI GGATG 1 cut(s) 85
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 242
CciI TCATGA 1 cut(s) 142
CfoI GCGC 1 cut(s) 302
CviAII CATG 4 cut(s) 76, 143, 269, 303
CviJI RGCY 8 cut(s) 15, 32, 54, 185, 260, 265, 285, 294
CviKI_1 RGCY 8 cut(s) 15, 32, 54, 185, 260, 265, 285, 294
DdeI CTNAG 1 cut(s) 116
DpnI GATC 2 cut(s) 63, 189
DpnII GATC 2 cut(s) 61, 187
EaeI YGGCCR 2 cut(s) 30, 183
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco147I AGGCCT 1 cut(s) 54
Eco88I CYCGRG 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 148
FaeI CATG 4 cut(s) 79, 146, 272, 306
FaiI YATR 4 cut(s) 77, 144, 270, 304
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FaqI GGGAC 1 cut(s) 26
FatI CATG 4 cut(s) 75, 142, 268, 302
Fnu4HI GCNGC 1 cut(s) 286
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 1 cut(s) 286
FspBI CTAG 1 cut(s) 50
GlaI GCGC 1 cut(s) 301
GluI GCNGC 1 cut(s) 286
HaeIII GGCC 3 cut(s) 32, 54, 185
HapII CCGG 3 cut(s) 86, 255, 289
HhaI GCGC 1 cut(s) 302
Hin1II CATG 4 cut(s) 79, 146, 272, 306
Hin6I GCGC 1 cut(s) 300
HinP1I GCGC 1 cut(s) 300
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 1 cut(s) 120
HpaII CCGG 3 cut(s) 86, 255, 289
HphI GGTGA 2 cut(s) 220, 284
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 164
Hpy188III TCNNGA 3 cut(s) 143, 191, 255
Hpy8I GTNNAC 1 cut(s) 113
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 2 cut(s) 238, 272
HpyCH4III ACNGT 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 3 cut(s) 232, 257, 291
HpyF3I CTNAG 1 cut(s) 116
Hsp92II CATG 4 cut(s) 79, 146, 272, 306
HspAI GCGC 1 cut(s) 300
Kpn2I TCCGGA 1 cut(s) 254
Kzo9I GATC 2 cut(s) 61, 187
LmnI GCTCC 4 cut(s) 88, 257, 282, 291
LpnPI CCDG 5 cut(s) 99, 135, 162, 268, 302
Lsp1109I GCAGC 1 cut(s) 272
LweI GCATC 1 cut(s) 70
MaeI CTAG 1 cut(s) 50
MalI GATC 2 cut(s) 63, 189
MboI GATC 2 cut(s) 61, 187
MboII GAAGA 1 cut(s) 232
MluCI AATT 1 cut(s) 5
MlyI GAGTC 1 cut(s) 114
MnlI CCTC 7 cut(s) 118, 204, 210, 216, 234, 268, 290
MroI TCCGGA 1 cut(s) 254
MslI CAYNNNNRTG 1 cut(s) 74
MspI CCGG 3 cut(s) 86, 255, 289
MspR9I CCNGG 2 cut(s) 87, 150
MvaI CCWGG 1 cut(s) 150
MwoI GCNNNNNNNGC 3 cut(s) 232, 257, 291
NciI CCSGG 1 cut(s) 87
NdeII GATC 2 cut(s) 61, 187
NlaIII CATG 4 cut(s) 79, 146, 272, 306
NlaIV GGNNCC 2 cut(s) 259, 293
NmeAIII GCCGAG 1 cut(s) 286
PaeR7I CTCGAG 1 cut(s) 122
PagI TCATGA 1 cut(s) 142
PceI AGGCCT 1 cut(s) 54
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PflFI GACNNNGTC 1 cut(s) 38
PkrI GCNGC 1 cut(s) 287
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 2 cut(s) 259, 293
PspXI VCTCGAGB 1 cut(s) 122
PsyI GACNNNGTC 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 74
SatI GCNGC 1 cut(s) 286
Sau3AI GATC 2 cut(s) 61, 187
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 2 cut(s) 87, 150
SetI ASST 7 cut(s) 17, 129, 151, 201, 215, 267, 287
SfaNI GCATC 1 cut(s) 70
Sfr274I CTCGAG 1 cut(s) 122
SlaI CTCGAG 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 1 cut(s) 5
SseBI AGGCCT 1 cut(s) 54
SspMI CTAG 1 cut(s) 50
StuI AGGCCT 1 cut(s) 54
StyD4I CCNGG 2 cut(s) 85, 148
TaaI ACNGT 1 cut(s) 38
TaqI TCGA 3 cut(s) 72, 99, 123
TasI AATT 1 cut(s) 5
TscAI CASTG 1 cut(s) 242
TseI GCWGC 1 cut(s) 285
TspDTI ATGAA 1 cut(s) 159
TspRI CASTG 1 cut(s) 242
Tth111I GACNNNGTC 1 cut(s) 38
XhoI CTCGAG 1 cut(s) 122
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.