Rh7BG206700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004869
Physical Location & Seq
Reverse (-)
17332649 .. 17332918
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG206700.1

Sequence Viewer

Length: 270 bp
ATGGAATTAAAAGGCTTATCACATTTCTTGGCCGGTGGTGTCCCAAATCTGGGCCTTGACGATCTAATCATTGACGTGAATGCTCAGGGTGGCAAACTCGACACCGATGGTGGACTTAGACTCGAGGTTGAACTCATTGCGCATGAACCTGGACAACAAATCAGATTTGCCGACGCCGGAATGGCCGATCAAGACGACCTTGAAGTGGTAGTCATCGTCCGACCTGTAGGCCATGTCGAAAAGCCGGAGAGACTTTCCGGTTGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.61

Weight (kDa)

4.58

Isoelectric Point (pI)

21.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 141
AcoI YGGCCR 2 cut(s) 30, 183
AcyI GRCGYC 1 cut(s) 174
AfiI CCNNNNNNNGG 3 cut(s) 49, 50, 205
AgsI TTSAA 2 cut(s) 131, 203
AjiI CACGTC 1 cut(s) 76
AjnI CCWGG 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 244
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 4 cut(s) 30, 52, 183, 229
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 1 cut(s) 52
AvaI CYCGRG 1 cut(s) 122
BccI CCATC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 244
BfmI CTRYAG 1 cut(s) 225
BglI GCCNNNNNGGC 1 cut(s) 182
Bme1390I CCNGG 1 cut(s) 150
BmeT110I CYCGRG 1 cut(s) 122
BmgBI CACGTC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 150
Bpu10I CCTNAGC 1 cut(s) 84
BsaHI GRCGYC 1 cut(s) 174
BsaWI WCCGGW 1 cut(s) 257
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 50, 205
Bse118I RCCGGY 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 135
BseBI CCWGG 1 cut(s) 150
BseLI CCNNNNNNNGG 3 cut(s) 49, 50, 205
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 98
BshFI GGCC 4 cut(s) 32, 54, 185, 231
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 4 cut(s) 33, 177, 245, 258
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 3 cut(s) 49, 50, 205
BsmAI GTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 26
BsmI GAATGC 1 cut(s) 85
BsnI GGCC 4 cut(s) 32, 54, 185, 231
BsoBI CYCGRG 1 cut(s) 122
Bsp143I GATC 2 cut(s) 61, 187
BspANI GGCC 4 cut(s) 32, 54, 185, 231
BspCNI CTCAG 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 135
BsrFI RCCGGY 1 cut(s) 32
BssAI RCCGGY 1 cut(s) 32
BssMI GATC 2 cut(s) 61, 187
BssNI GRCGYC 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 150
BstACI GRCGYC 1 cut(s) 174
BstDEI CTNAG 2 cut(s) 84, 116
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 2 cut(s) 64, 190
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 2 cut(s) 61, 187
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 1 cut(s) 225
BsuRI GGCC 4 cut(s) 32, 54, 185, 231
BtrI CACGTC 1 cut(s) 76
CfoI GCGC 1 cut(s) 142
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 52
CseI GACGC 1 cut(s) 182
CviAII CATG 2 cut(s) 143, 233
CviJI RGCY 6 cut(s) 15, 32, 54, 185, 231, 244
CviKI_1 RGCY 6 cut(s) 15, 32, 54, 185, 231, 244
DdeI CTNAG 2 cut(s) 84, 116
DpnI GATC 2 cut(s) 63, 189
DpnII GATC 2 cut(s) 61, 187
EaeI YGGCCR 2 cut(s) 30, 183
Eco88I CYCGRG 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 148
FaeI CATG 2 cut(s) 146, 236
FaiI YATR 2 cut(s) 144, 234
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FaqI GGGAC 1 cut(s) 26
FatI CATG 2 cut(s) 142, 232
FspI TGCGCA 1 cut(s) 141
GlaI GCGC 1 cut(s) 141
HaeIII GGCC 4 cut(s) 32, 54, 185, 231
HapII CCGG 4 cut(s) 33, 177, 245, 258
HgaI GACGC 1 cut(s) 182
HhaI GCGC 1 cut(s) 142
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 2 cut(s) 146, 236
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HinfI GANTC 1 cut(s) 120
HpaII CCGG 4 cut(s) 33, 177, 245, 258
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 164, 221
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 113
Hpy99I CGWCG 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 2 cut(s) 84, 116
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 2 cut(s) 146, 236
HspAI GCGC 1 cut(s) 140
Kzo9I GATC 2 cut(s) 61, 187
LpnPI CCDG 8 cut(s) 35, 46, 71, 135, 162, 190, 237, 258
MaeII ACGT 1 cut(s) 75
MalI GATC 2 cut(s) 63, 189
MboI GATC 2 cut(s) 61, 187
MluCI AATT 1 cut(s) 5
MlyI GAGTC 1 cut(s) 114
MmeI TCCRAC 2 cut(s) 242, 244
MnlI CCTC 1 cut(s) 118
MseI TTAA 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 74
MspI CCGG 4 cut(s) 33, 177, 245, 258
MspR9I CCNGG 1 cut(s) 150
Mva1269I GAATGC 1 cut(s) 85
MvaI CCWGG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 2 cut(s) 61, 187
NlaIII CATG 2 cut(s) 146, 236
NsbI TGCGCA 1 cut(s) 141
PaeR7I CTCGAG 1 cut(s) 122
PctI GAATGC 1 cut(s) 85
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspPI GGNCC 1 cut(s) 52
PspXI VCTCGAGB 1 cut(s) 122
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 1 cut(s) 8
Sau3AI GATC 2 cut(s) 61, 187
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 150
SetI ASST 5 cut(s) 78, 129, 151, 201, 226
SfcI CTRYAG 1 cut(s) 225
Sfr274I CTCGAG 1 cut(s) 122
SlaI CTCGAG 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 148
TaiI ACGT 1 cut(s) 78
TaqI TCGA 3 cut(s) 99, 123, 237
TasI AATT 1 cut(s) 5
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 159
XhoI CTCGAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.