Rh7CG109800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004869
Physical Location & Seq
Reverse (-)
8481942 .. 8486248
4307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG109800.1

Sequence Viewer

Length: 291 bp
ATGGAGCTTCCTGTGGCCGGTTCAGTAGGTTTCCAGCAGGTTCTCTGGGTGGCGCCGCCGGTTCTGGACTCCTGGGATCGAGTGCTTCAAGGTGTAAGGTGGAGGCAGAAAATGCTTCAAGGCCTTGACGATCTAATCATCAACATGGATGCTCCGGGTGGCAAACTCGACACCGATGGTGGACTTAGACTCGAGGTTGAACTTATTGCGCATGAACCTGGACAACAAATCGGATTTGCCGATACCGGAATGGCCAATCAAGACTACCTTGAAGTGGTAGTCGTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.53

Weight (kDa)

4.21

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 210
Acc36I ACCTGC 1 cut(s) 28
AccB1I GGYRCC 1 cut(s) 52
AciI CCGC 1 cut(s) 56
AclWI GGATC 1 cut(s) 84
AcoI YGGCCR 2 cut(s) 15, 252
AcyI GRCGYC 1 cut(s) 53
AfiI CCNNNNNNNGG 2 cut(s) 17, 274
AgsI TTSAA 4 cut(s) 89, 119, 200, 272
AjnI CCWGG 2 cut(s) 71, 217
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
AlwI GGATC 1 cut(s) 84
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 3 cut(s) 15, 121, 252
AspLEI GCGC 2 cut(s) 55, 211
AsuC2I CCSGG 1 cut(s) 156
AvaI CYCGRG 1 cut(s) 191
BalI TGGCCA 1 cut(s) 254
BanI GGYRCC 1 cut(s) 52
BccI CCATC 1 cut(s) 170
BciT130I CCWGG 2 cut(s) 73, 219
BcnI CCSGG 1 cut(s) 156
BfoI RGCGCY 1 cut(s) 56
BfuAI ACCTGC 1 cut(s) 28
BisI GCNGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 57
Bme1390I CCNGG 3 cut(s) 73, 156, 219
BmeT110I CYCGRG 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 3 cut(s) 73, 156, 219
BmsI GCATC 1 cut(s) 139
BpuMI CCSGG 1 cut(s) 156
BsaHI GRCGYC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 245
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 274
Bse118I RCCGGY 2 cut(s) 17, 58
BseBI CCWGG 2 cut(s) 73, 219
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 2 cut(s) 17, 274
BshFI GGCC 3 cut(s) 17, 123, 254
BshNI GGYRCC 1 cut(s) 52
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 4 cut(s) 18, 59, 155, 246
BslI CCNNNNNNNGG 2 cut(s) 17, 274
BsnI GGCC 3 cut(s) 17, 123, 254
BsoBI CYCGRG 1 cut(s) 191
Bsp143I GATC 2 cut(s) 76, 130
BspACI CCGC 1 cut(s) 56
BspANI GGCC 3 cut(s) 17, 123, 254
BspLI GGNNCC 1 cut(s) 54
BspMI ACCTGC 1 cut(s) 28
BspPI GGATC 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 52
BsrFI RCCGGY 2 cut(s) 17, 58
BssAI RCCGGY 2 cut(s) 17, 58
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 2 cut(s) 76, 130
BssNI GRCGYC 1 cut(s) 53
Bst2UI CCWGG 2 cut(s) 73, 219
BstACI GRCGYC 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 112
BstDEI CTNAG 1 cut(s) 185
BstF5I GGATG 1 cut(s) 154
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 2 cut(s) 55, 211
BstKTI GATC 2 cut(s) 79, 133
BstMBI GATC 2 cut(s) 76, 130
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 2 cut(s) 73, 219
BstSCI CCNGG 3 cut(s) 71, 154, 217
BsuRI GGCC 3 cut(s) 17, 123, 254
BtsCI GGATG 1 cut(s) 154
BveI ACCTGC 1 cut(s) 28
CfoI GCGC 2 cut(s) 55, 211
Cfr10I RCCGGY 2 cut(s) 17, 58
CviAII CATG 2 cut(s) 145, 212
CviJI RGCY 4 cut(s) 7, 17, 123, 254
CviKI_1 RGCY 4 cut(s) 7, 17, 123, 254
DdeI CTNAG 1 cut(s) 185
DinI GGCGCC 1 cut(s) 54
DpnI GATC 2 cut(s) 78, 132
DpnII GATC 2 cut(s) 76, 130
EaeI YGGCCR 2 cut(s) 15, 252
Eco147I AGGCCT 1 cut(s) 123
Eco88I CYCGRG 1 cut(s) 191
EcoRII CCWGG 2 cut(s) 71, 217
EgeI GGCGCC 1 cut(s) 54
EheI GGCGCC 1 cut(s) 54
FaeI CATG 2 cut(s) 148, 215
FaiI YATR 2 cut(s) 146, 213
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FatI CATG 2 cut(s) 144, 211
Fnu4HI GCNGC 1 cut(s) 56
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 56
FspI TGCGCA 1 cut(s) 210
GlaI GCGC 2 cut(s) 54, 210
GluI GCNGC 1 cut(s) 56
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 3 cut(s) 17, 123, 254
HapII CCGG 4 cut(s) 18, 59, 155, 246
HhaI GCGC 2 cut(s) 55, 211
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 2 cut(s) 148, 215
Hin6I GCGC 2 cut(s) 53, 209
HinP1I GCGC 2 cut(s) 53, 209
HinfI GANTC 2 cut(s) 68, 189
HpaII CCGG 4 cut(s) 18, 59, 155, 246
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 2 cut(s) 233, 290
Hpy188III TCNNGA 2 cut(s) 65, 260
Hpy8I GTNNAC 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 1 cut(s) 185
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 2 cut(s) 148, 215
HspAI GCGC 2 cut(s) 53, 209
KasI GGCGCC 1 cut(s) 52
Kzo9I GATC 2 cut(s) 76, 130
LmnI GCTCC 2 cut(s) 4, 157
LweI GCATC 1 cut(s) 139
MalI GATC 2 cut(s) 78, 132
MboI GATC 2 cut(s) 76, 130
MlsI TGGCCA 1 cut(s) 254
MluNI TGGCCA 1 cut(s) 254
Mly113I GGCGCC 1 cut(s) 53
MlyI GAGTC 2 cut(s) 62, 183
MnlI CCTC 2 cut(s) 96, 187
Mox20I TGGCCA 1 cut(s) 254
MscI TGGCCA 1 cut(s) 254
MslI CAYNNNNRTG 1 cut(s) 143
Msp20I TGGCCA 1 cut(s) 254
MspI CCGG 4 cut(s) 18, 59, 155, 246
MspR9I CCNGG 3 cut(s) 73, 156, 219
MvaI CCWGG 2 cut(s) 73, 219
MwoI GCNNNNNNNGC 1 cut(s) 112
NarI GGCGCC 1 cut(s) 53
NciI CCSGG 1 cut(s) 156
NdeII GATC 2 cut(s) 76, 130
NlaIII CATG 2 cut(s) 148, 215
NlaIV GGNNCC 1 cut(s) 54
NsbI TGCGCA 1 cut(s) 210
PaeR7I CTCGAG 1 cut(s) 191
PceI AGGCCT 1 cut(s) 123
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PkrI GCNGC 1 cut(s) 57
PleI GAGTC 2 cut(s) 62, 183
PluTI GGCGCC 1 cut(s) 56
PpsI GAGTC 2 cut(s) 62, 183
Psp6I CCWGG 2 cut(s) 71, 217
PspGI CCWGG 2 cut(s) 71, 217
PspN4I GGNNCC 1 cut(s) 54
PspXI VCTCGAGB 1 cut(s) 191
RseI CAYNNNNRTG 1 cut(s) 143
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 2 cut(s) 76, 130
SchI GAGTC 2 cut(s) 62, 183
ScrFI CCNGG 3 cut(s) 73, 156, 219
SetI ASST 8 cut(s) 9, 31, 42, 94, 101, 198, 220, 270
SfaNI GCATC 1 cut(s) 139
SfoI GGCGCC 1 cut(s) 54
Sfr274I CTCGAG 1 cut(s) 191
SlaI CTCGAG 1 cut(s) 191
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
SseBI AGGCCT 1 cut(s) 123
SsiI CCGC 1 cut(s) 56
SspDI GGCGCC 1 cut(s) 52
StuI AGGCCT 1 cut(s) 123
StyD4I CCNGG 3 cut(s) 71, 154, 217
TaqI TCGA 3 cut(s) 79, 168, 192
TauI GCSGC 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 228
XhoI CTCGAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.