Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002438

Physical Location & Seq

Genomic Coordinates Forward (+)

25838568 .. 25840768

Gene Structure 2201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1164600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTTCGAGGTGAGCCATGCTATCGAACTTGAAATTCGTTTACTATCGAAGTTGTTTTTGGACTTTTTTTTTCCCCTCAGCTGGAATATGATGCTTGTTTCGATGTTAGTGTGCGAGCAGGCGCATAGTATGGCGCAAAATCTGGACCCGAAAAGTGATGGCATCGGTGTTCTGCAGTTTAAGGTTCGACTGATGACTGTAATCAAGCAAAGACTTGCGAAAAAACATGGGGGTCAAATAGATCAGCGTCGTGATATTGAGCACCTATGCGAATTTTACCAGCGCTACACGCGACTACATCGAGTTGGTGATATCCAGATACAGGAACCAACATGGCGGGAATCTGGAACTTTTAGTGCTGACTTTGGCAATTGTTTAGAAATTAAAGAGACAATGGCTACCTGGAGGACTTTAGTTGAGGTGATGAAGGCTCTTAGCAAAGATGCCGATCCTAATGGAGTCGGAAAACTTATTACAGAGGAGTTGCGAAGAGTTGAAAACACCGATGCAACATTATCTGGGGAGCTAACAGCCTACAAAGATGTCCTTCTAGAAGCACCACCATTAATCAACGCAATTGGAGCTTTCCCAGAAAAAGACAATGTGAGGAACCAGAGAGTGAATGTTGTTCTTACATTTGCAAATGCACAATCTCGGCTTGGTAAACCTATTAAGGTCACTACATTTGGTTGCTACTTGTTTCAAATAATCGAAACAAACCTTGTTGTAAGCGAGGGAAAGACTGTGTACGTGCACAGGGCCGGCCCAGGCCCAGTGCAACCAGGGCCATTGTCCAGGGCCCAAAATTTAAAGGGGCACCAAAAAAAAAAAGTCCAAATAATTAGGTATAAAAAAAAAATTATCCAGAGCCCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0007049 GO:0007275 GO:0008150 GO:0009506 GO:0009555 GO:0009556 GO:0009987 GO:0012505 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0030054 GO:0032501 GO:0032502 GO:0034293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048589 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0055044 GO:0071944 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase

Protein Analysis

293

Amino Acids

33.19

Weight (kDa)

9.42

Isoelectric Point (pI)

29.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36850
fragaria_vesca	FvH4_5g07240
malus_domestica	MD06G1158200.v1.1 MD14G1164600.v1.1 MD14G1164700.v1.1 MD14G1164800.v1.1
prunus_persica	Prupe.5G158100_v2.0.a1 Prupe.5G158100_v2.0.a1 Prupe.5G181200_v2.0.a1
pyrus_communis	pycom06g14110 pycom06g14120 pycom06g14130 pycom14g13740
rosa_chinensis	RchiOBHm_Chr3g0493651 RchiOBHm_Chr7g0191411 RchiOBHm_Chr7g0191641
rosa_laevigata	RLG00000004437 RLG00000004438 RLG00000004457
rosa_multiflora	Rmu_sc0001123.1_g000007 Rmu_sc0002661.1_g000007 Rmu_sc0003634.1_g000001 Rmu_sc0003634.1_g000002
rosa_roxburghii	Rroxscaffold_157G00438350 Rroxscaffold_157G00438470 Rroxscaffold_2G00133560 Rroxscaffold_3G00263680 Rroxscaffold_3G00263840
rosa_rugosa	Rorug06G0510400 Rorug06G0510600
rosa_samantha	Rh7AG118000 Rh7AG119400 Rh7AG119500 Rh7BG120100 Rh7BG121600 Rh7BG121700 Rh7CG122900 Rh7CG124400 Rh7DG121000 Rh7DG122500
rosa_wichuraiana	Rw7G010190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	816
AccII	CGCG	1 cut(s)	292
AciI	CCGC	1 cut(s)	337
AclWI	GGATC	1 cut(s)	443
AcsI	RAATTY	3 cut(s)	33, 272, 805
AfaI	GTAC	1 cut(s)	749
AfeI	AGCGCT	1 cut(s)	284
AfiI	CCNNNNNNNGG	2 cut(s)	81, 322
AgsI	TTSAA	3 cut(s)	32, 497, 704
AjnI	CCWGG	4 cut(s)	401, 766, 781, 794
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AluBI	AGCT	3 cut(s)	81, 526, 584
AluI	AGCT	3 cut(s)	81, 526, 584
Alw21I	GWGCWC	2 cut(s)	264, 756
Alw26I	GTCTC	1 cut(s)	383
Alw44I	GTGCAC	1 cut(s)	752
AlwI	GGATC	1 cut(s)	443
Aor51HI	AGCGCT	1 cut(s)	284
AoxI	GGCC	5 cut(s)	759, 763, 769, 785, 798
ApaI	GGGCCC	1 cut(s)	802
ApaLI	GTGCAC	1 cut(s)	752
ApoI	RAATTY	3 cut(s)	33, 272, 805
AseI	ATTAAT	1 cut(s)	566
AspLEI	GCGC	3 cut(s)	124, 136, 285
AspS9I	GGNCC	7 cut(s)	145, 759, 764, 770, 785, 798, 799
AsuHPI	GGTGA	3 cut(s)	22, 320, 433
AvaII	GGWCC	1 cut(s)	145
BaeGI	GKGCMC	3 cut(s)	756, 802, 819
BanI	GGYRCC	1 cut(s)	816
BanII	GRGCYC	2 cut(s)	802, 872
Bbv12I	GWGCWC	2 cut(s)	264, 756
BbvCI	CCTCAGC	1 cut(s)	77
BccI	CCATC	1 cut(s)	152
BciT130I	CCWGG	4 cut(s)	403, 768, 783, 796
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	1 cut(s)	551
BfmI	CTRYAG	1 cut(s)	173
BfoI	RGCGCY	1 cut(s)	286
Bme1390I	CCNGG	4 cut(s)	403, 768, 783, 796
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	7 cut(s)	145, 759, 764, 770, 785, 798, 799
BmiI	GGNNCC	5 cut(s)	147, 327, 611, 800, 818
BmrFI	CCNGG	4 cut(s)	403, 768, 783, 796
BmrI	ACTGGG	1 cut(s)	767
BmsI	GCATC	4 cut(s)	81, 171, 433, 496
BmuI	ACTGGG	1 cut(s)	767
BpmI	CTGGAG	1 cut(s)	424
Bpu10I	CCTNAGC	1 cut(s)	77
BsaAI	YACGTR	1 cut(s)	751
BsaBI	GATNNNNATC	1 cut(s)	447
BsaJI	CCNNGG	3 cut(s)	766, 782, 795
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 322
Bse118I	RCCGGY	1 cut(s)	761
Bse1I	ACTGG	1 cut(s)	773
Bse8I	GATNNNNATC	1 cut(s)	447
BseBI	CCWGG	4 cut(s)	403, 768, 783, 796
BseDI	CCNNGG	3 cut(s)	766, 782, 795
BseJI	GATNNNNATC	1 cut(s)	447
BseLI	CCNNNNNNNGG	2 cut(s)	81, 322
BseMII	CTCAG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	773
BseRI	GAGGAG	1 cut(s)	494
BseSI	GKGCMC	3 cut(s)	756, 802, 819
Bsh1236I	CGCG	1 cut(s)	292
BshFI	GGCC	5 cut(s)	761, 765, 771, 787, 800
BshNI	GGYRCC	1 cut(s)	816
BsiHKAI	GWGCWC	2 cut(s)	264, 756
BsiSI	CCGG	1 cut(s)	762
BslI	CCNNNNNNNGG	2 cut(s)	81, 322
BsmAI	GTCTC	1 cut(s)	383
BsnI	GGCC	5 cut(s)	761, 765, 771, 787, 800
Bsp120I	GGGCCC	1 cut(s)	798
Bsp1286I	GDGCHC	5 cut(s)	264, 756, 802, 819, 872
Bsp143I	GATC	2 cut(s)	241, 448
BspACI	CCGC	1 cut(s)	337
BspANI	GGCC	5 cut(s)	761, 765, 771, 787, 800
BspCNI	CTCAG	1 cut(s)	90
BspFNI	CGCG	1 cut(s)	292
BspLI	GGNNCC	5 cut(s)	147, 327, 611, 800, 818
BspMAI	CTGCAG	1 cut(s)	177
BspPI	GGATC	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	816
BsrFI	RCCGGY	1 cut(s)	761
BsrI	ACTGG	1 cut(s)	773
BssAI	RCCGGY	1 cut(s)	761
BssECI	CCNNGG	3 cut(s)	766, 782, 795
BssMI	GATC	2 cut(s)	241, 448
Bst2UI	CCWGG	4 cut(s)	403, 768, 783, 796
Bst4CI	ACNGT	2 cut(s)	199, 745
Bst6I	CTCTTC	1 cut(s)	484
BstBAI	YACGTR	1 cut(s)	751
BstC8I	GCNNGC	3 cut(s)	116, 120, 763
BstDEI	CTNAG	2 cut(s)	77, 434
BstFNI	CGCG	1 cut(s)	292
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	3 cut(s)	124, 136, 285
BstKTI	GATC	2 cut(s)	244, 451
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	2 cut(s)	241, 448
BstMWI	GCNNNNNNNGC	3 cut(s)	289, 581, 784
BstNI	CCWGG	4 cut(s)	403, 768, 783, 796
BstSCI	CCNGG	4 cut(s)	401, 766, 781, 794
BstSFI	CTRYAG	1 cut(s)	173
BstSLI	GKGCMC	3 cut(s)	756, 802, 819
BstUI	CGCG	1 cut(s)	292
BsuRI	GGCC	5 cut(s)	761, 765, 771, 787, 800
BtsIMutI	CAGTG	1 cut(s)	780
Cac8I	GCNNGC	3 cut(s)	116, 120, 763
CfoI	GCGC	3 cut(s)	124, 136, 285
Cfr10I	RCCGGY	1 cut(s)	761
Cfr13I	GGNCC	7 cut(s)	145, 759, 764, 770, 785, 798, 799
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	748
CviAII	CATG	3 cut(s)	17, 227, 333
CviQI	GTAC	1 cut(s)	748
DdeI	CTNAG	2 cut(s)	77, 434
DpnI	GATC	2 cut(s)	243, 450
DpnII	GATC	2 cut(s)	241, 448
DraI	TTTAAA	1 cut(s)	810
Eam1104I	CTCTTC	1 cut(s)	484
EarI	CTCTTC	1 cut(s)	484
Eco24I	GRGCYC	2 cut(s)	802, 872
Eco32I	GATATC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	145
Eco47III	AGCGCT	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	798
EcoRII	CCWGG	4 cut(s)	401, 766, 781, 794
EcoRV	GATATC	1 cut(s)	313
EcoT38I	GRGCYC	2 cut(s)	802, 872
FaeI	CATG	3 cut(s)	20, 230, 336
FaiI	YATR	8 cut(s)	18, 89, 126, 131, 228, 268, 334, 849
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FatI	CATG	3 cut(s)	16, 226, 332
FauI	CCCGC	1 cut(s)	330
FriOI	GRGCYC	2 cut(s)	802, 872
FseI	GGCCGGCC	1 cut(s)	765
FspBI	CTAG	1 cut(s)	551
GlaI	GCGC	3 cut(s)	123, 135, 284
GsuI	CTGGAG	1 cut(s)	424
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	5 cut(s)	761, 765, 771, 787, 800
HapII	CCGG	1 cut(s)	762
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	3 cut(s)	124, 136, 285
Hin1II	CATG	3 cut(s)	20, 230, 336
Hin6I	GCGC	3 cut(s)	122, 134, 283
HinP1I	GCGC	3 cut(s)	122, 134, 283
HinfI	GANTC	2 cut(s)	341, 459
HpaII	CCGG	1 cut(s)	762
HphI	GGTGA	3 cut(s)	22, 320, 433
Hpy166II	GTNNAC	4 cut(s)	41, 665, 748, 754
Hpy188I	TCNGA	1 cut(s)	464
Hpy188III	TCNNGA	6 cut(s)	143, 251, 316, 345, 551, 865
Hpy8I	GTNNAC	4 cut(s)	41, 665, 748, 754
Hpy99I	CGWCG	1 cut(s)	252
HpyAV	CCTTC	2 cut(s)	421, 557
HpyCH4III	ACNGT	2 cut(s)	199, 745
HpyCH4IV	ACGT	1 cut(s)	750
HpyCH4V	TGCA	6 cut(s)	175, 509, 641, 647, 754, 778
HpyF10VI	GCNNNNNNNGC	3 cut(s)	289, 581, 784
HpyF3I	CTNAG	2 cut(s)	77, 434
HpySE526I	ACGT	1 cut(s)	750
Hsp92II	CATG	3 cut(s)	20, 230, 336
HspAI	GCGC	3 cut(s)	122, 134, 283
KroI	GCCGGC	1 cut(s)	761
KroNI	GCCGGC	1 cut(s)	763
Kzo9I	GATC	2 cut(s)	241, 448
LmnI	GCTCC	2 cut(s)	523, 581
LweI	GCATC	4 cut(s)	81, 171, 433, 496
MaeI	CTAG	1 cut(s)	551
MaeII	ACGT	1 cut(s)	750
MaeIII	GTNAC	1 cut(s)	676
MalI	GATC	2 cut(s)	243, 450
MboI	GATC	2 cut(s)	241, 448
MboII	GAAGA	1 cut(s)	501
MfeI	CAATTG	2 cut(s)	370, 576
MhlI	GDGCHC	5 cut(s)	264, 756, 802, 819, 872
MluCI	AATT	8 cut(s)	33, 272, 370, 381, 576, 805, 840, 858
MlyI	GAGTC	1 cut(s)	468
MmeI	TCCRAC	1 cut(s)	442
MnlI	CCTC	6 cut(s)	86, 399, 412, 472, 600, 727
MroNI	GCCGGC	1 cut(s)	761
MseI	TTAA	5 cut(s)	180, 384, 566, 672, 809
MspA1I	CMGCKG	1 cut(s)	81
MspI	CCGG	1 cut(s)	762
MspR9I	CCNGG	4 cut(s)	403, 768, 783, 796
MunI	CAATTG	2 cut(s)	370, 576
MvaI	CCWGG	4 cut(s)	403, 768, 783, 796
MvnI	CGCG	1 cut(s)	292
MwoI	GCNNNNNNNGC	3 cut(s)	289, 581, 784
NaeI	GCCGGC	1 cut(s)	763
NdeII	GATC	2 cut(s)	241, 448
NgoMIV	GCCGGC	1 cut(s)	761
NlaIII	CATG	3 cut(s)	20, 230, 336
NlaIV	GGNNCC	5 cut(s)	147, 327, 611, 800, 818
NmeAIII	GCCGAG	1 cut(s)	634
NmuCI	GTSAC	1 cut(s)	676
PdiI	GCCGGC	1 cut(s)	763
PfeI	GAWTC	1 cut(s)	341
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
Ppu21I	YACGTR	1 cut(s)	751
PshBI	ATTAAT	1 cut(s)	566
Psp6I	CCWGG	4 cut(s)	401, 766, 781, 794
PspGI	CCWGG	4 cut(s)	401, 766, 781, 794
PspN4I	GGNNCC	5 cut(s)	147, 327, 611, 800, 818
PspOMI	GGGCCC	1 cut(s)	798
PspPI	GGNCC	7 cut(s)	145, 759, 764, 770, 785, 798, 799
PstI	CTGCAG	1 cut(s)	177
PvuII	CAGCTG	1 cut(s)	81
RigI	GGCCGGCC	1 cut(s)	765
RsaI	GTAC	1 cut(s)	749
RsaNI	GTAC	1 cut(s)	748
SaqAI	TTAA	5 cut(s)	180, 384, 566, 672, 809
Sau3AI	GATC	2 cut(s)	241, 448
Sau96I	GGNCC	7 cut(s)	145, 759, 764, 770, 785, 798, 799
SchI	GAGTC	1 cut(s)	468
ScrFI	CCNGG	4 cut(s)	403, 768, 783, 796
SduI	GDGCHC	5 cut(s)	264, 756, 802, 819, 872
SfaNI	GCATC	4 cut(s)	81, 171, 433, 496
SfcI	CTRYAG	1 cut(s)	173
SinI	GGWCC	1 cut(s)	145
Sse9I	AATT	8 cut(s)	33, 272, 370, 381, 576, 805, 840, 858
SsiI	CCGC	1 cut(s)	337
SspMI	CTAG	1 cut(s)	551
StyD4I	CCNGG	4 cut(s)	401, 766, 781, 794
TaaI	ACNGT	2 cut(s)	199, 745
TaiI	ACGT	1 cut(s)	753
TaqI	TCGA	7 cut(s)	6, 24, 47, 101, 187, 301, 711
TasI	AATT	8 cut(s)	33, 272, 370, 381, 576, 805, 840, 858
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	5 cut(s)	180, 384, 566, 672, 809
Tru9I	TTAA	5 cut(s)	180, 384, 566, 672, 809
TscAI	CASTG	1 cut(s)	780
TseFI	GTSAC	1 cut(s)	676
Tsp45I	GTSAC	1 cut(s)	676
TspDTI	ATGAA	1 cut(s)	440
TspRI	CASTG	1 cut(s)	780
VneI	GTGCAC	1 cut(s)	752
VpaK11BI	GGWCC	1 cut(s)	145
VspI	ATTAAT	1 cut(s)	566
XapI	RAATTY	3 cut(s)	33, 272, 805
XbaI	TCTAGA	1 cut(s)	550
XspI	CTAG	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.