Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000157

Orthogroup ID

OG0002438

Physical Location & Seq

Genomic Coordinates Forward (+)

132658 .. 139607

Gene Structure 6950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_157G00438470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAAAAAGACAATTGCTATCTTGAGGGCATTAGTTGAGGAGTTGGAGTCGCTTAGCAAAGATGCAGATCCTTACGGAGTTGGAAGGCAAATTACAGAGTTGCGCAGAATTAAAAGCACTGATGCAACATTATCTGTGGAGCTCACAGCCTACAATATCGTCCCACTGGAAGCACCATTACTAACGAATGCAATTGGTGTATTTCCGGAAGTTAGAGGTGCGATATTGGCAACTAGATATACTGAACAATTCCCTAGGCTGCCAGCTAAGTTTGAGATATCTGAACAATGGGATGCAGACAATCTTTCAGAAAGACAATGTAAGGAACCAGAAAGAGAATTTTGTCCTTACAATTGCAAATGCACAATCTCGCCTTGGTATACCTGCACAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0007049 GO:0007275 GO:0008150 GO:0009506 GO:0009555 GO:0009556 GO:0009987 GO:0012505 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0030054 GO:0032501 GO:0032502 GO:0034293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048589 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0055044 GO:0071944 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase

Protein Analysis

131

Amino Acids

14.84

Weight (kDa)

5.1

Isoelectric Point (pI)

52.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36850
fragaria_vesca	FvH4_5g07240
malus_domestica	MD06G1158200.v1.1 MD14G1164600.v1.1 MD14G1164700.v1.1 MD14G1164800.v1.1
prunus_persica	Prupe.5G158100_v2.0.a1 Prupe.5G158100_v2.0.a1 Prupe.5G181200_v2.0.a1
pyrus_communis	pycom06g14110 pycom06g14120 pycom06g14130 pycom14g13740
rosa_chinensis	RchiOBHm_Chr3g0493651 RchiOBHm_Chr7g0191411 RchiOBHm_Chr7g0191641
rosa_laevigata	RLG00000004437 RLG00000004438 RLG00000004457
rosa_multiflora	Rmu_sc0001123.1_g000007 Rmu_sc0002661.1_g000007 Rmu_sc0003634.1_g000001 Rmu_sc0003634.1_g000002
rosa_roxburghii	Rroxscaffold_157G00438350 Rroxscaffold_157G00438470 Rroxscaffold_2G00133560 Rroxscaffold_3G00263680 Rroxscaffold_3G00263840
rosa_rugosa	Rorug06G0510400 Rorug06G0510600
rosa_samantha	Rh7AG118000 Rh7AG119400 Rh7AG119500 Rh7BG120100 Rh7BG121600 Rh7BG121700 Rh7CG122900 Rh7CG124400 Rh7DG121000 Rh7DG122500
rosa_wichuraiana	Rw7G010190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	380
AccIII	TCCGGA	1 cut(s)	205
AclWI	GGATC	1 cut(s)	62
AcsI	RAATTY	1 cut(s)	338
AluBI	AGCT	2 cut(s)	142, 266
AluI	AGCT	2 cut(s)	142, 266
Alw21I	GWGCWC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	62
Aor13HI	TCCGGA	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	259
ApoI	RAATTY	1 cut(s)	338
AspA2I	CCTAGG	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	105
AvrII	CCTAGG	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	144
BarI	GAAGNNNNNNTAC	4 cut(s)	76, 108, 162, 194
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	246
BfaI	CTAG	2 cut(s)	234, 255
BfuAI	ACCTGC	1 cut(s)	392
BisI	GCNGC	1 cut(s)	260
BlnI	CCTAGG	1 cut(s)	254
BlpI	GCTNAGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	261
BmiI	GGNNCC	1 cut(s)	327
BmsI	GCATC	3 cut(s)	52, 112, 283
Bpu1102I	GCTNAGC	1 cut(s)	53
BpuEI	CTTGAG	1 cut(s)	43
BsaBI	GATNNNNATC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	254, 374
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bse1I	ACTGG	1 cut(s)	171
Bse8I	GATNNNNATC	1 cut(s)	66
BseAI	TCCGGA	1 cut(s)	205
BseDI	CCNNGG	2 cut(s)	254, 374
BseGI	GGATG	1 cut(s)	298
BseJI	GATNNNNATC	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	246
BsgI	GTGCAG	1 cut(s)	370
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	206
BslFI	GGGAC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp13I	TCCGGA	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	67
Bsp1720I	GCTNAGC	1 cut(s)	53
BspEI	TCCGGA	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	327
BspMI	ACCTGC	1 cut(s)	392
BspPI	GGATC	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	171
BssECI	CCNNGG	2 cut(s)	254, 374
BssMI	GATC	1 cut(s)	67
BssNAI	GTATAC	1 cut(s)	381
BssT1I	CCWWGG	2 cut(s)	254, 374
Bst1107I	GTATAC	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	2 cut(s)	53, 267
BstF5I	GGATG	1 cut(s)	298
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	1 cut(s)	70
BstMBI	GATC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BstZ17I	GTATAC	1 cut(s)	381
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	2 cut(s)	117, 164
BveI	ACCTGC	1 cut(s)	392
Cac8I	GCNNGC	1 cut(s)	264
CfoI	GCGC	1 cut(s)	105
CviJI	RGCY	5 cut(s)	142, 149, 259, 266, 393
CviKI_1	RGCY	5 cut(s)	142, 149, 259, 266, 393
DdeI	CTNAG	2 cut(s)	53, 267
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	2 cut(s)	254, 374
Eco24I	GRGCYC	1 cut(s)	144
Eco32I	GATATC	1 cut(s)	279
Eco53kI	GAGCTC	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	142
EcoRV	GATATC	1 cut(s)	279
EcoT14I	CCWWGG	2 cut(s)	254, 374
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	2 cut(s)	254, 374
FaiI	YATR	2 cut(s)	240, 381
FaqI	GGGAC	1 cut(s)	146
FblI	GTMKAC	1 cut(s)	380
Fnu4HI	GCNGC	1 cut(s)	260
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	260
FspBI	CTAG	2 cut(s)	234, 255
FspI	TGCGCA	1 cut(s)	104
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	260
HapII	CCGG	1 cut(s)	206
HhaI	GCGC	1 cut(s)	105
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HinfI	GANTC	1 cut(s)	47
HpaII	CCGG	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	381
Hpy188I	TCNGA	2 cut(s)	283, 310
Hpy188III	TCNNGA	2 cut(s)	22, 206
Hpy8I	GTNNAC	1 cut(s)	381
HpyAV	CCTTC	1 cut(s)	78
HpyCH4V	TGCA	7 cut(s)	65, 125, 191, 296, 357, 363, 387
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	2 cut(s)	53, 267
HspAI	GCGC	1 cut(s)	103
Kpn2I	TCCGGA	1 cut(s)	205
Kzo9I	GATC	1 cut(s)	67
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	5 cut(s)	152, 219, 276, 342, 375
Lsp1109I	GCAGC	1 cut(s)	246
LweI	GCATC	3 cut(s)	52, 112, 283
MaeI	CTAG	2 cut(s)	234, 255
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MfeI	CAATTG	3 cut(s)	12, 192, 352
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	7 cut(s)	12, 90, 108, 192, 248, 338, 352
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	2 cut(s)	24, 61
MnlI	CCTC	3 cut(s)	18, 31, 209
MroI	TCCGGA	1 cut(s)	205
MseI	TTAA	1 cut(s)	111
MspI	CCGG	1 cut(s)	206
MunI	CAATTG	3 cut(s)	12, 192, 352
Mva1269I	GAATGC	1 cut(s)	193
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeII	GATC	1 cut(s)	67
NlaIV	GGNNCC	1 cut(s)	327
NsbI	TGCGCA	1 cut(s)	104
PctI	GAATGC	1 cut(s)	193
PkrI	GCNGC	1 cut(s)	261
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	327
PsuI	RGATCY	1 cut(s)	67
SacI	GAGCTC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	1 cut(s)	260
Sau3AI	GATC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	4 cut(s)	144, 220, 268, 386
SfaNI	GCATC	3 cut(s)	52, 112, 283
SgeI	CNNG	9 cut(s)	34, 179, 218, 246, 267, 275, 341, 382, 387
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
Sse9I	AATT	7 cut(s)	12, 90, 108, 192, 248, 338, 352
SspMI	CTAG	2 cut(s)	234, 255
SstI	GAGCTC	1 cut(s)	144
StyI	CCWWGG	2 cut(s)	254, 374
TasI	AATT	7 cut(s)	12, 90, 108, 192, 248, 338, 352
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	2 cut(s)	124, 171
TseI	GCWGC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	90
TspRI	CASTG	2 cut(s)	124, 171
XapI	RAATTY	1 cut(s)	338
XmaJI	CCTAGG	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	380
XspI	CTAG	2 cut(s)	234, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.