Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002438

Physical Location & Seq

Genomic Coordinates Forward (+)

9648313 .. 9650393

Gene Structure 2081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG124400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCGCAAAATCTTGACCCTACTAGTGATGGAAGAGGAGTTCTTCAGTTTAAGACTGGTTTGATGTCTGTAATTATGCAAAAACTTGCGAGAAGGGATGGGGGTCAAATAGATCGCAATCGTGATATTGAGCACCTCTGGGAATTTTACTGGCGCTACAACTATATAGAGATGAAAAAGACAATTGCTATCTTGAGGGCTTTAGTTGAGGAGTTGGAGTCGCTTAGCAAAGATGCAGATCCTTACGGAGTTGGAAGGCAAATTACAGAGTTGCGCAGAATTAAAAGCACTGATGCAACATTATCTGGGGAGCTCACAGCCTACAATATCATCCCAATGGAAGCACCATTACTAACCAATGCAATTGGAGTATTTCCGGAAGTTAGAGGTGAGATATTGGCAATTAGATATACTGAACAATTCCCTAGGCTGCTAGCTAAGTTTGAGATATCTGGACAATGGGATGCAGATAAGTATGATCTTCTGGAACATGTGTTCAGTTTTCATTTTTGTGTTTCCCTACATTTTACTCAAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0007049 GO:0007275 GO:0008150 GO:0009506 GO:0009555 GO:0009556 GO:0009987 GO:0012505 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0030054 GO:0032501 GO:0032502 GO:0034293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048589 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0055044 GO:0071944 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase

Protein Analysis

179

Amino Acids

20.65

Weight (kDa)

5.6

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36850
fragaria_vesca	FvH4_5g07240
malus_domestica	MD06G1158200.v1.1 MD14G1164600.v1.1 MD14G1164700.v1.1 MD14G1164800.v1.1
prunus_persica	Prupe.5G158100_v2.0.a1 Prupe.5G158100_v2.0.a1 Prupe.5G181200_v2.0.a1
pyrus_communis	pycom06g14110 pycom06g14120 pycom06g14130 pycom14g13740
rosa_chinensis	RchiOBHm_Chr3g0493651 RchiOBHm_Chr7g0191411 RchiOBHm_Chr7g0191641
rosa_laevigata	RLG00000004437 RLG00000004438 RLG00000004457
rosa_multiflora	Rmu_sc0001123.1_g000007 Rmu_sc0002661.1_g000007 Rmu_sc0003634.1_g000001 Rmu_sc0003634.1_g000002
rosa_roxburghii	Rroxscaffold_157G00438350 Rroxscaffold_157G00438470 Rroxscaffold_2G00133560 Rroxscaffold_3G00263680 Rroxscaffold_3G00263840
rosa_rugosa	Rorug06G0510400 Rorug06G0510600
rosa_samantha	Rh7AG118000 Rh7AG119400 Rh7AG119500 Rh7BG120100 Rh7BG121600 Rh7BG121700 Rh7CG122900 Rh7CG124400 Rh7DG121000 Rh7DG122500
rosa_wichuraiana	Rw7G010190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	275
AccIII	TCCGGA	1 cut(s)	376
AclWI	GGATC	1 cut(s)	233
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	29
AflIII	ACRYGT	1 cut(s)	490
AhlI	ACTAGT	1 cut(s)	23
AloI	GAACNNNNNNTCC	4 cut(s)	24, 56, 479, 511
AluBI	AGCT	2 cut(s)	313, 437
AluI	AGCT	2 cut(s)	313, 437
Alw21I	GWGCWC	2 cut(s)	135, 315
AlwI	GGATC	1 cut(s)	233
Aor13HI	TCCGGA	1 cut(s)	376
ApeKI	GCWGC	1 cut(s)	430
ApoI	RAATTY	1 cut(s)	143
AspA2I	CCTAGG	1 cut(s)	425
AspLEI	GCGC	3 cut(s)	7, 156, 276
AsuHPI	GGTGA	1 cut(s)	401
AsuNHI	GCTAGC	1 cut(s)	433
AvrII	CCTAGG	1 cut(s)	425
BanII	GRGCYC	1 cut(s)	315
BarI	GAAGNNNNNNTAC	4 cut(s)	247, 279, 333, 365
Bbv12I	GWGCWC	2 cut(s)	135, 315
BbvI	GCAGC	1 cut(s)	417
BccI	CCATC	2 cut(s)	23, 92
BcuI	ACTAGT	1 cut(s)	23
BfaI	CTAG	4 cut(s)	24, 426, 434, 538
BfoI	RGCGCY	1 cut(s)	157
BisI	GCNGC	1 cut(s)	431
BlnI	CCTAGG	1 cut(s)	425
BlpI	GCTNAGC	1 cut(s)	224
BlsI	GCNGC	1 cut(s)	432
BmsI	GCATC	3 cut(s)	223, 283, 454
BmtI	GCTAGC	1 cut(s)	437
Bpu1102I	GCTNAGC	1 cut(s)	224
BpuEI	CTTGAG	2 cut(s)	214, 516
BsaBI	GATNNNNATC	2 cut(s)	117, 237
BsaJI	CCNNGG	1 cut(s)	425
BsaWI	WCCGGW	1 cut(s)	376
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bse1I	ACTGG	2 cut(s)	61, 155
Bse8I	GATNNNNATC	2 cut(s)	117, 237
BseAI	TCCGGA	1 cut(s)	376
BseDI	CCNNGG	1 cut(s)	425
BseGI	GGATG	3 cut(s)	103, 330, 469
BseJI	GATNNNNATC	2 cut(s)	117, 237
BseNI	ACTGG	2 cut(s)	61, 155
BseRI	GAGGAG	2 cut(s)	51, 224
BseXI	GCAGC	1 cut(s)	417
BsiHKAI	GWGCWC	2 cut(s)	135, 315
BsiSI	CCGG	1 cut(s)	377
Bsp1286I	GDGCHC	2 cut(s)	135, 315
Bsp13I	TCCGGA	1 cut(s)	376
Bsp143I	GATC	3 cut(s)	112, 238, 478
Bsp1720I	GCTNAGC	1 cut(s)	224
BspEI	TCCGGA	1 cut(s)	376
BspOI	GCTAGC	1 cut(s)	437
BspPI	GGATC	1 cut(s)	233
BsrI	ACTGG	2 cut(s)	61, 155
BssECI	CCNNGG	1 cut(s)	425
BssMI	GATC	3 cut(s)	112, 238, 478
BssT1I	CCWWGG	1 cut(s)	425
Bst6I	CTCTTC	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	2 cut(s)	224, 438
BstF5I	GGATG	3 cut(s)	103, 330, 469
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	3 cut(s)	7, 156, 276
BstKTI	GATC	3 cut(s)	115, 241, 481
BstMBI	GATC	3 cut(s)	112, 238, 478
BstNSI	RCATGY	1 cut(s)	494
BstV1I	GCAGC	1 cut(s)	417
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BtsCI	GGATG	3 cut(s)	103, 330, 469
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	435
CfoI	GCGC	3 cut(s)	7, 156, 276
CviAII	CATG	1 cut(s)	491
CviJI	RGCY	6 cut(s)	200, 313, 320, 430, 437, 536
CviKI_1	RGCY	6 cut(s)	200, 313, 320, 430, 437, 536
DdeI	CTNAG	2 cut(s)	224, 438
DpnI	GATC	3 cut(s)	114, 240, 480
DpnII	GATC	3 cut(s)	112, 238, 478
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
Ecl136II	GAGCTC	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	425
Eco24I	GRGCYC	1 cut(s)	315
Eco32I	GATATC	1 cut(s)	450
Eco53kI	GAGCTC	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	29
EcoICRI	GAGCTC	1 cut(s)	313
EcoRV	GATATC	1 cut(s)	450
EcoT14I	CCWWGG	1 cut(s)	425
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	425
FaeI	CATG	1 cut(s)	494
FaiI	YATR	6 cut(s)	77, 165, 167, 411, 477, 492
FatI	CATG	1 cut(s)	490
Fnu4HI	GCNGC	1 cut(s)	431
FokI	GGATG	3 cut(s)	110, 317, 476
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	1 cut(s)	431
FspBI	CTAG	4 cut(s)	24, 426, 434, 538
FspI	TGCGCA	1 cut(s)	275
GlaI	GCGC	3 cut(s)	6, 155, 275
GluI	GCNGC	1 cut(s)	431
HaeII	RGCGCY	1 cut(s)	157
HapII	CCGG	1 cut(s)	377
HhaI	GCGC	3 cut(s)	7, 156, 276
Hin1II	CATG	1 cut(s)	494
Hin6I	GCGC	3 cut(s)	5, 154, 274
HinP1I	GCGC	3 cut(s)	5, 154, 274
HinfI	GANTC	1 cut(s)	218
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	1 cut(s)	401
Hpy188III	TCNNGA	6 cut(s)	14, 122, 193, 377, 453, 485
HpyAV	CCTTC	2 cut(s)	87, 249
HpyCH4V	TGCA	5 cut(s)	79, 236, 296, 362, 467
HpyF3I	CTNAG	2 cut(s)	224, 438
Hsp92II	CATG	1 cut(s)	494
HspAI	GCGC	3 cut(s)	5, 154, 274
Kpn2I	TCCGGA	1 cut(s)	376
Kzo9I	GATC	3 cut(s)	112, 238, 478
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	7 cut(s)	42, 124, 136, 291, 390, 438, 470
Lsp1109I	GCAGC	1 cut(s)	417
LweI	GCATC	3 cut(s)	223, 283, 454
MaeI	CTAG	4 cut(s)	24, 426, 434, 538
MalI	GATC	3 cut(s)	114, 240, 480
MboI	GATC	3 cut(s)	112, 238, 478
MboII	GAAGA	3 cut(s)	35, 45, 473
MfeI	CAATTG	2 cut(s)	183, 363
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	2 cut(s)	135, 315
MluCI	AATT	8 cut(s)	72, 143, 183, 261, 279, 363, 402, 419
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	2 cut(s)	195, 232
MnlI	CCTC	5 cut(s)	29, 146, 189, 202, 380
MroI	TCCGGA	1 cut(s)	376
MseI	TTAA	2 cut(s)	51, 282
MslI	CAYNNNNRTG	2 cut(s)	335, 510
MspI	CCGG	1 cut(s)	377
MunI	CAATTG	2 cut(s)	183, 363
NdeII	GATC	3 cut(s)	112, 238, 478
NheI	GCTAGC	1 cut(s)	433
NlaIII	CATG	1 cut(s)	494
NsbI	TGCGCA	1 cut(s)	275
NspI	RCATGY	1 cut(s)	494
PciI	ACATGT	1 cut(s)	490
PkrI	GCNGC	1 cut(s)	432
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PscI	ACATGT	1 cut(s)	490
Psp124BI	GAGCTC	1 cut(s)	315
PsuI	RGATCY	1 cut(s)	238
RseI	CAYNNNNRTG	2 cut(s)	335, 510
SacI	GAGCTC	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	51, 282
SatI	GCNGC	1 cut(s)	431
Sau3AI	GATC	3 cut(s)	112, 238, 478
SchI	GAGTC	1 cut(s)	227
SduI	GDGCHC	2 cut(s)	135, 315
SetI	ASST	4 cut(s)	138, 315, 391, 439
SfaNI	GCATC	3 cut(s)	223, 283, 454
SmiMI	CAYNNNNRTG	2 cut(s)	335, 510
SmlI	CTYRAG	2 cut(s)	193, 531
SmoI	CTYRAG	2 cut(s)	193, 531
SpeI	ACTAGT	1 cut(s)	23
Sse9I	AATT	8 cut(s)	72, 143, 183, 261, 279, 363, 402, 419
SspMI	CTAG	4 cut(s)	24, 426, 434, 538
SstI	GAGCTC	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	425
TasI	AATT	8 cut(s)	72, 143, 183, 261, 279, 363, 402, 419
Tru1I	TTAA	2 cut(s)	51, 282
Tru9I	TTAA	2 cut(s)	51, 282
TscAI	CASTG	1 cut(s)	295
TseI	GCWGC	1 cut(s)	430
TspDTI	ATGAA	2 cut(s)	188, 494
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	1 cut(s)	295
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	494
XmaJI	CCTAGG	1 cut(s)	425
XspI	CTAG	4 cut(s)	24, 426, 434, 538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.