Rh7AG119500

callose synthase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
9377233 .. 9383524
6292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG119500.1

Sequence Viewer

Length: 294 bp
ATGCGTGAATCTGGGACTTTTACTGCTAACTTTGGAGACTATATAGAGATGAAAAAGACAATTGCTATCTTGAGGGCTTTAGTTGAGGAGTTGGAGTCGCTTAGCAAAGATGCAGATCCTTACGGAGTTGGAAGGCAAATTACAGAGTTGCGCAGAATTAAAAGCACTGATGCAACATTATCTGGGGAGCTCACAGCCTACAATATCGTCCCAATGGAAGCACCATTACTAACCAATGCAATTGGAGTATTTCCGGAAGTTAGAGGTGCGATATTGGCAATTAGATATACTTAA

Protein Analysis

97

Amino Acids

10.69

Weight (kDa)

5.1

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 152
AccIII TCCGGA 1 cut(s) 253
AclWI GGATC 1 cut(s) 110
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 30
AlwI GGATC 1 cut(s) 110
Aor13HI TCCGGA 1 cut(s) 253
AspLEI GCGC 1 cut(s) 153
BanII GRGCYC 1 cut(s) 192
BarI GAAGNNNNNNTAC 4 cut(s) 124, 156, 210, 242
Bbv12I GWGCWC 1 cut(s) 192
BcoDI GTCTC 1 cut(s) 30
BlpI GCTNAGC 1 cut(s) 101
BmsI GCATC 2 cut(s) 100, 160
Bpu1102I GCTNAGC 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bse8I GATNNNNATC 1 cut(s) 114
BseAI TCCGGA 1 cut(s) 253
BseJI GATNNNNATC 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 2 cut(s) 28, 194
BsmAI GTCTC 1 cut(s) 30
BsmFI GGGAC 2 cut(s) 28, 194
Bsp1286I GDGCHC 1 cut(s) 192
Bsp13I TCCGGA 1 cut(s) 253
Bsp143I GATC 1 cut(s) 115
Bsp1720I GCTNAGC 1 cut(s) 101
BspEI TCCGGA 1 cut(s) 253
BspPI GGATC 1 cut(s) 110
BssMI GATC 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 101
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 1 cut(s) 115
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 165
CfoI GCGC 1 cut(s) 153
CviJI RGCY 3 cut(s) 77, 190, 197
CviKI_1 RGCY 3 cut(s) 77, 190, 197
DdeI CTNAG 1 cut(s) 101
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Ecl136II GAGCTC 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 192
Eco53kI GAGCTC 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 192
FaiI YATR 3 cut(s) 42, 44, 288
FaqI GGGAC 2 cut(s) 28, 194
FriOI GRGCYC 1 cut(s) 192
FspI TGCGCA 1 cut(s) 152
GlaI GCGC 1 cut(s) 152
HapII CCGG 1 cut(s) 254
HhaI GCGC 1 cut(s) 153
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HinfI GANTC 2 cut(s) 8, 95
HpaII CCGG 1 cut(s) 254
Hpy188III TCNNGA 2 cut(s) 70, 254
HpyAV CCTTC 1 cut(s) 126
HpyCH4V TGCA 3 cut(s) 113, 173, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 1 cut(s) 101
HspAI GCGC 1 cut(s) 151
Kpn2I TCCGGA 1 cut(s) 253
Kzo9I GATC 1 cut(s) 115
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 2 cut(s) 168, 267
LweI GCATC 2 cut(s) 100, 160
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MfeI CAATTG 2 cut(s) 60, 240
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 5 cut(s) 60, 138, 156, 240, 279
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 2 cut(s) 72, 109
MnlI CCTC 3 cut(s) 66, 79, 257
MroI TCCGGA 1 cut(s) 253
MseI TTAA 2 cut(s) 159, 292
MspI CCGG 1 cut(s) 254
MunI CAATTG 2 cut(s) 60, 240
MwoI GCNNNNNNNGC 1 cut(s) 275
NdeII GATC 1 cut(s) 115
NsbI TGCGCA 1 cut(s) 152
PfeI GAWTC 1 cut(s) 8
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
Psp124BI GAGCTC 1 cut(s) 192
PsuI RGATCY 1 cut(s) 115
SacI GAGCTC 1 cut(s) 192
SaqAI TTAA 2 cut(s) 159, 292
Sau3AI GATC 1 cut(s) 115
SchI GAGTC 1 cut(s) 104
SduI GDGCHC 1 cut(s) 192
SetI ASST 2 cut(s) 192, 268
SfaNI GCATC 2 cut(s) 100, 160
SgeI CNNG 5 cut(s) 17, 24, 82, 195, 266
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
Sse9I AATT 5 cut(s) 60, 138, 156, 240, 279
SstI GAGCTC 1 cut(s) 192
TasI AATT 5 cut(s) 60, 138, 156, 240, 279
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 2 cut(s) 159, 292
Tru9I TTAA 2 cut(s) 159, 292
TscAI CASTG 1 cut(s) 172
TspDTI ATGAA 1 cut(s) 65
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.