Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0002438

Physical Location & Seq

Genomic Coordinates Forward (+)

25844409 .. 25851097

Gene Structure 6689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1164700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTGCAGCACCTGCGGATAAGCACTTTATGGAACAGTTTCGAAGCACTTGGTCGTGACCGGAAACTTAATCTGGTTTCCTTGTACTTTCTGATATGGGGCGAAGCTGCAAATTTCCGCTTTCTTCCCAATTGTGTTTGCTATATATTTCACCTTATGGCTAGAGAGTTAGATGCCATGTTAGATAATGGAGAAGCTTATCCTGCTGCCAGCTGCAAAACAGAGAGCAGATTAGTGTCGTTCCTTGAGCAAATCGGTCTTCCAATATATGAAGCATTGGATGCGAAAGCTGCCAGAAACAATAACAGGAAAGCTGCGCATTCAGCACAGCGGAATTATGGTCGCTTGCTTGTTTTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0007049 GO:0007275 GO:0008150 GO:0009506 GO:0009555 GO:0009556 GO:0009987 GO:0012505 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0030054 GO:0032501 GO:0032502 GO:0034293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048589 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0055044 GO:0071944 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase

Protein Analysis

121

Amino Acids

13.69

Weight (kDa)

8.91

Isoelectric Point (pI)

23.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKS1_dom1	PF14288	22 - 113	5.7e-26	1,3-beta-glucan synthase subunit FKS1, domain-1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36850
fragaria_vesca	FvH4_5g07240
malus_domestica	MD06G1158200.v1.1 MD14G1164600.v1.1 MD14G1164700.v1.1 MD14G1164800.v1.1
prunus_persica	Prupe.5G158100_v2.0.a1 Prupe.5G158100_v2.0.a1 Prupe.5G181200_v2.0.a1
pyrus_communis	pycom06g14110 pycom06g14120 pycom06g14130 pycom14g13740
rosa_chinensis	RchiOBHm_Chr3g0493651 RchiOBHm_Chr7g0191411 RchiOBHm_Chr7g0191641
rosa_laevigata	RLG00000004437 RLG00000004438 RLG00000004457
rosa_multiflora	Rmu_sc0001123.1_g000007 Rmu_sc0002661.1_g000007 Rmu_sc0003634.1_g000001 Rmu_sc0003634.1_g000002
rosa_roxburghii	Rroxscaffold_157G00438350 Rroxscaffold_157G00438470 Rroxscaffold_2G00133560 Rroxscaffold_3G00263680 Rroxscaffold_3G00263840
rosa_rugosa	Rorug06G0510400 Rorug06G0510600
rosa_samantha	Rh7AG118000 Rh7AG119400 Rh7AG119500 Rh7BG120100 Rh7BG121600 Rh7BG121700 Rh7CG122900 Rh7CG124400 Rh7DG121000 Rh7DG122500
rosa_wichuraiana	Rw7G010190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	21
Acc16I	TGCGCA	1 cut(s)	318
Acc36I	ACCTGC	1 cut(s)	21
AciI	CCGC	3 cut(s)	16, 118, 331
AcsI	RAATTY	1 cut(s)	112
AfaI	GTAC	1 cut(s)	86
AluBI	AGCT	5 cut(s)	107, 197, 213, 290, 314
AluI	AGCT	5 cut(s)	107, 197, 213, 290, 314
AlwNI	CAGNNNCTG	1 cut(s)	13
ApeKI	GCWGC	6 cut(s)	7, 107, 206, 213, 290, 314
ApoI	RAATTY	1 cut(s)	112
Asp700I	GAANNNNTTC	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	143
AsuII	TTCGAA	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	251
BbvI	GCAGC	6 cut(s)	19, 94, 193, 200, 277, 301
BfaI	CTAG	1 cut(s)	162
BfuAI	ACCTGC	1 cut(s)	21
BisI	GCNGC	6 cut(s)	8, 108, 207, 214, 291, 315
BlsI	GCNGC	6 cut(s)	9, 109, 208, 215, 292, 316
BmsI	GCATC	2 cut(s)	163, 271
BpiI	GAAGAC	1 cut(s)	251
Bpu14I	TTCGAA	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	266
BsaWI	WCCGGW	1 cut(s)	60
BseGI	GGATG	1 cut(s)	286
BseXI	GCAGC	6 cut(s)	19, 94, 193, 200, 277, 301
BsgI	GTGCAG	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	61
BsmI	GAATGC	1 cut(s)	319
Bsp119I	TTCGAA	1 cut(s)	42
BspACI	CCGC	3 cut(s)	16, 118, 331
BspMI	ACCTGC	1 cut(s)	21
BspT104I	TTCGAA	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	38
BstAPI	GCANNNNNTGC	2 cut(s)	13, 281
BstBI	TTCGAA	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	211, 347
BstF5I	GGATG	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	5 cut(s)	13, 203, 281, 290, 323
BstV1I	GCAGC	6 cut(s)	19, 94, 193, 200, 277, 301
BstV2I	GAAGAC	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	286
BveI	ACCTGC	1 cut(s)	21
Cac8I	GCNNGC	2 cut(s)	211, 347
CaiI	CAGNNNCTG	1 cut(s)	13
CfoI	GCGC	1 cut(s)	319
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	6 cut(s)	107, 161, 197, 213, 290, 314
CviKI_1	RGCY	6 cut(s)	107, 161, 197, 213, 290, 314
CviQI	GTAC	1 cut(s)	85
FaeI	CATG	1 cut(s)	181
FaiI	YATR	9 cut(s)	31, 97, 144, 146, 158, 179, 268, 270, 339
FatI	CATG	1 cut(s)	177
Fnu4HI	GCNGC	6 cut(s)	8, 108, 207, 214, 291, 315
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	6 cut(s)	8, 108, 207, 214, 291, 315
FspBI	CTAG	1 cut(s)	162
FspI	TGCGCA	1 cut(s)	318
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	6 cut(s)	8, 108, 207, 214, 291, 315
HapII	CCGG	1 cut(s)	61
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	1 cut(s)	181
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HindIII	AAGCTT	1 cut(s)	195
HpaII	CCGG	1 cut(s)	61
HphI	GGTGA	1 cut(s)	143
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	1 cut(s)	56
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4V	TGCA	3 cut(s)	7, 110, 216
HpyF10VI	GCNNNNNNNGC	5 cut(s)	13, 203, 281, 290, 323
Hsp92II	CATG	1 cut(s)	181
HspAI	GCGC	1 cut(s)	317
LpnPI	CCDG	7 cut(s)	26, 59, 74, 216, 223, 292, 307
Lsp1109I	GCAGC	6 cut(s)	19, 94, 193, 200, 277, 301
LweI	GCATC	2 cut(s)	163, 271
MaeI	CTAG	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	56
MboII	GAAGA	2 cut(s)	116, 251
MfeI	CAATTG	1 cut(s)	130
MluCI	AATT	3 cut(s)	112, 130, 334
MroXI	GAANNNNTTC	1 cut(s)	38
MseI	TTAA	1 cut(s)	69
MspA1I	CMGCKG	2 cut(s)	213, 331
MspI	CCGG	1 cut(s)	61
MunI	CAATTG	1 cut(s)	130
Mva1269I	GAATGC	1 cut(s)	319
MwoI	GCNNNNNNNGC	5 cut(s)	13, 203, 281, 290, 323
NlaIII	CATG	1 cut(s)	181
NmuCI	GTSAC	1 cut(s)	56
NsbI	TGCGCA	1 cut(s)	318
NspV	TTCGAA	1 cut(s)	42
PaqCI	CACCTGC	1 cut(s)	21
PctI	GAATGC	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	38
PkrI	GCNGC	6 cut(s)	9, 109, 208, 215, 292, 316
PstNI	CAGNNNCTG	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	213
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	6 cut(s)	8, 108, 207, 214, 291, 315
SetI	ASST	7 cut(s)	15, 109, 156, 199, 215, 292, 316
SfaNI	GCATC	2 cut(s)	163, 271
SfuI	TTCGAA	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	3 cut(s)	112, 130, 334
SsiI	CCGC	3 cut(s)	16, 118, 331
SspMI	CTAG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	38
TaqI	TCGA	1 cut(s)	42
TaqII	GACCGA	1 cut(s)	245
TasI	AATT	3 cut(s)	112, 130, 334
TatI	WGTACW	1 cut(s)	84
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	6 cut(s)	7, 107, 206, 213, 290, 314
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	1 cut(s)	285
XapI	RAATTY	1 cut(s)	112
XmnI	GAANNNNTTC	1 cut(s)	38
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.