Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002438

Physical Location & Seq

Genomic Coordinates Reverse (-)

57549255 .. 57554816

Gene Structure 5562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAAAAAGACAATTGCTATCTTGAGGGCATTAGTTGAGGAGTTGGAGTCGCTTAGCAAAGATGCAGATCCTTACGGAGTTGGAAGGCAAATTACAGAGTTGCGCAGAATTAAAAGCACTGATGCAACATTATCTGTGGAGCTCACAGCCTACAATATCGTCCCACTGGAAGCACCATTACTAACGAATGCAATTGGTGTATTTCCGGAAGTTAGAGGTGCGATATTGGCAACTAGATATACTGAACAATTCCCTAGGCTGCCAGCTAAGTTTGAGATATCTGAACAATGGGATGCAGACAAGTATGATCTTCCGGAATATAAAGACAATGTAAGGAACCAGAAAGAGAATTTTGTCCTTACAATTGCAAATGCACAATCTCGCCTTGGTATACCTGCACAGGCTGATCCAATCGCGAAGGAGTTAGATGCTATTCCTGCTGCTAGCTGCACAATAGAAAATGATTCTGTGTCCTTCCTCAAGCAGATTGTTTATCCTATATATGAAACATTGGCAGGTGGTCACCTGCTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0007049 GO:0007275 GO:0008150 GO:0009506 GO:0009555 GO:0009556 GO:0009987 GO:0012505 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0030054 GO:0032501 GO:0032502 GO:0034293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048589 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0055044 GO:0071944 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase

Protein Analysis

178

Amino Acids

19.76

Weight (kDa)

4.91

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36850
fragaria_vesca	FvH4_5g07240
malus_domestica	MD06G1158200.v1.1 MD14G1164600.v1.1 MD14G1164700.v1.1 MD14G1164800.v1.1
prunus_persica	Prupe.5G158100_v2.0.a1 Prupe.5G158100_v2.0.a1 Prupe.5G181200_v2.0.a1
pyrus_communis	pycom06g14110 pycom06g14120 pycom06g14130 pycom14g13740
rosa_chinensis	RchiOBHm_Chr3g0493651 RchiOBHm_Chr7g0191411 RchiOBHm_Chr7g0191641
rosa_laevigata	RLG00000004437 RLG00000004438 RLG00000004457
rosa_multiflora	Rmu_sc0001123.1_g000007 Rmu_sc0002661.1_g000007 Rmu_sc0003634.1_g000001 Rmu_sc0003634.1_g000002
rosa_roxburghii	Rroxscaffold_157G00438350 Rroxscaffold_157G00438470 Rroxscaffold_2G00133560 Rroxscaffold_3G00263680 Rroxscaffold_3G00263840
rosa_rugosa	Rorug06G0510400 Rorug06G0510600
rosa_samantha	Rh7AG118000 Rh7AG119400 Rh7AG119500 Rh7BG120100 Rh7BG121600 Rh7BG121700 Rh7CG122900 Rh7CG124400 Rh7DG121000 Rh7DG122500
rosa_wichuraiana	Rw7G010190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	506
Acc16I	TGCGCA	1 cut(s)	104
Acc36I	ACCTGC	2 cut(s)	403, 506
AccI	GTMKAC	1 cut(s)	391
AccII	CGCG	1 cut(s)	416
AccIII	TCCGGA	2 cut(s)	205, 313
AclWI	GGATC	2 cut(s)	62, 401
AcsI	RAATTY	1 cut(s)	349
AluBI	AGCT	3 cut(s)	142, 266, 447
AluI	AGCT	3 cut(s)	142, 266, 447
Alw21I	GWGCWC	1 cut(s)	144
AlwI	GGATC	2 cut(s)	62, 401
Aor13HI	TCCGGA	2 cut(s)	205, 313
ApeKI	GCWGC	3 cut(s)	259, 440, 447
ApoI	RAATTY	1 cut(s)	349
AspA2I	CCTAGG	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	515
AsuNHI	GCTAGC	1 cut(s)	443
AvrII	CCTAGG	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	144
BarI	GAAGNNNNNNTAC	4 cut(s)	76, 108, 162, 194
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	246, 427, 434
BfaI	CTAG	3 cut(s)	234, 255, 444
BfuAI	ACCTGC	2 cut(s)	403, 506
BisI	GCNGC	3 cut(s)	260, 441, 448
BlnI	CCTAGG	1 cut(s)	254
BlpI	GCTNAGC	1 cut(s)	53
BlsI	GCNGC	3 cut(s)	261, 442, 449
BmiI	GGNNCC	1 cut(s)	338
BmsI	GCATC	4 cut(s)	52, 112, 283, 418
BmtI	GCTAGC	1 cut(s)	447
Bpu1102I	GCTNAGC	1 cut(s)	53
BpuEI	CTTGAG	2 cut(s)	43, 464
BsaBI	GATNNNNATC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	254, 385
BsaWI	WCCGGW	2 cut(s)	205, 313
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bse1I	ACTGG	1 cut(s)	171
Bse8I	GATNNNNATC	1 cut(s)	66
BseAI	TCCGGA	2 cut(s)	205, 313
BseDI	CCNNGG	2 cut(s)	254, 385
BseGI	GGATG	1 cut(s)	298
BseJI	GATNNNNATC	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	3 cut(s)	246, 427, 434
BsgI	GTGCAG	2 cut(s)	381, 433
Bsh1236I	CGCG	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	2 cut(s)	206, 314
BslFI	GGGAC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp13I	TCCGGA	2 cut(s)	205, 313
Bsp143I	GATC	3 cut(s)	67, 307, 406
Bsp1720I	GCTNAGC	1 cut(s)	53
Bsp68I	TCGCGA	1 cut(s)	416
BspEI	TCCGGA	2 cut(s)	205, 313
BspFNI	CGCG	1 cut(s)	416
BspLI	GGNNCC	1 cut(s)	338
BspMI	ACCTGC	2 cut(s)	403, 506
BspOI	GCTAGC	1 cut(s)	447
BspPI	GGATC	2 cut(s)	62, 401
BsrI	ACTGG	1 cut(s)	171
BssECI	CCNNGG	2 cut(s)	254, 385
BssMI	GATC	3 cut(s)	67, 307, 406
BssNAI	GTATAC	1 cut(s)	392
BssT1I	CCWWGG	2 cut(s)	254, 385
Bst1107I	GTATAC	1 cut(s)	392
BstC8I	GCNNGC	2 cut(s)	264, 445
BstDEI	CTNAG	2 cut(s)	53, 267
BstEII	GGTNACC	1 cut(s)	521
BstF5I	GGATG	1 cut(s)	298
BstFNI	CGCG	1 cut(s)	416
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	3 cut(s)	70, 310, 409
BstMBI	GATC	3 cut(s)	67, 307, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 437
BstPI	GGTNACC	1 cut(s)	521
BstUI	CGCG	1 cut(s)	416
BstV1I	GCAGC	3 cut(s)	246, 427, 434
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BstZ17I	GTATAC	1 cut(s)	392
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	2 cut(s)	117, 164
BtuMI	TCGCGA	1 cut(s)	416
BveI	ACCTGC	2 cut(s)	403, 506
Cac8I	GCNNGC	2 cut(s)	264, 445
CfoI	GCGC	1 cut(s)	105
CviJI	RGCY	6 cut(s)	142, 149, 259, 266, 404, 447
CviKI_1	RGCY	6 cut(s)	142, 149, 259, 266, 404, 447
DdeI	CTNAG	2 cut(s)	53, 267
DpnI	GATC	3 cut(s)	69, 309, 408
DpnII	GATC	3 cut(s)	67, 307, 406
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	2 cut(s)	254, 385
Eco24I	GRGCYC	1 cut(s)	144
Eco32I	GATATC	1 cut(s)	279
Eco53kI	GAGCTC	1 cut(s)	142
Eco91I	GGTNACC	1 cut(s)	521
EcoICRI	GAGCTC	1 cut(s)	142
EcoO65I	GGTNACC	1 cut(s)	521
EcoRV	GATATC	1 cut(s)	279
EcoT14I	CCWWGG	2 cut(s)	254, 385
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	2 cut(s)	254, 385
FaiI	YATR	7 cut(s)	240, 306, 321, 392, 500, 502, 504
FaqI	GGGAC	1 cut(s)	146
FblI	GTMKAC	1 cut(s)	391
Fnu4HI	GCNGC	3 cut(s)	260, 441, 448
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	3 cut(s)	260, 441, 448
FspBI	CTAG	3 cut(s)	234, 255, 444
FspI	TGCGCA	1 cut(s)	104
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	3 cut(s)	260, 441, 448
HapII	CCGG	2 cut(s)	206, 314
HhaI	GCGC	1 cut(s)	105
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HinfI	GANTC	2 cut(s)	47, 464
HpaII	CCGG	2 cut(s)	206, 314
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	4 cut(s)	22, 206, 314, 415
Hpy8I	GTNNAC	1 cut(s)	392
HpyAV	CCTTC	3 cut(s)	78, 412, 484
HpyCH4V	TGCA	8 cut(s)	65, 125, 191, 296, 368, 374, 398, 450
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 437
HpyF3I	CTNAG	2 cut(s)	53, 267
HspAI	GCGC	1 cut(s)	103
Kpn2I	TCCGGA	2 cut(s)	205, 313
Kzo9I	GATC	3 cut(s)	67, 307, 406
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	9 cut(s)	152, 219, 276, 327, 353, 386, 408, 450, 501
Lsp1109I	GCAGC	3 cut(s)	246, 427, 434
LweI	GCATC	4 cut(s)	52, 112, 283, 418
MaeI	CTAG	3 cut(s)	234, 255, 444
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	3 cut(s)	69, 309, 408
MboI	GATC	3 cut(s)	67, 307, 406
MboII	GAAGA	1 cut(s)	302
MfeI	CAATTG	3 cut(s)	12, 192, 363
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	7 cut(s)	12, 90, 108, 192, 248, 349, 363
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	2 cut(s)	24, 61
MnlI	CCTC	4 cut(s)	18, 31, 209, 488
MroI	TCCGGA	2 cut(s)	205, 313
MseI	TTAA	1 cut(s)	111
MspI	CCGG	2 cut(s)	206, 314
MunI	CAATTG	3 cut(s)	12, 192, 363
Mva1269I	GAATGC	1 cut(s)	193
MvnI	CGCG	1 cut(s)	416
MwoI	GCNNNNNNNGC	2 cut(s)	227, 437
NdeII	GATC	3 cut(s)	67, 307, 406
NheI	GCTAGC	1 cut(s)	443
NlaIV	GGNNCC	1 cut(s)	338
NmuCI	GTSAC	1 cut(s)	521
NruI	TCGCGA	1 cut(s)	416
NsbI	TGCGCA	1 cut(s)	104
PaqCI	CACCTGC	1 cut(s)	506
PctI	GAATGC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	464
PkrI	GCNGC	3 cut(s)	261, 442, 449
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	144
PspEI	GGTNACC	1 cut(s)	521
PspN4I	GGNNCC	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	67
RruI	TCGCGA	1 cut(s)	416
SacI	GAGCTC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	3 cut(s)	260, 441, 448
Sau3AI	GATC	3 cut(s)	67, 307, 406
SchI	GAGTC	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	7 cut(s)	144, 220, 268, 397, 449, 520, 528
SfaNI	GCATC	4 cut(s)	52, 112, 283, 418
SmlI	CTYRAG	2 cut(s)	22, 479
SmoI	CTYRAG	2 cut(s)	22, 479
Sse9I	AATT	7 cut(s)	12, 90, 108, 192, 248, 349, 363
SspMI	CTAG	3 cut(s)	234, 255, 444
SstI	GAGCTC	1 cut(s)	144
StyI	CCWWGG	2 cut(s)	254, 385
TasI	AATT	7 cut(s)	12, 90, 108, 192, 248, 349, 363
TfiI	GAWTC	1 cut(s)	464
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	2 cut(s)	124, 171
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	3 cut(s)	259, 440, 447
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	2 cut(s)	17, 519
TspGWI	ACGGA	1 cut(s)	90
TspRI	CASTG	2 cut(s)	124, 171
XapI	RAATTY	1 cut(s)	349
XmaJI	CCTAGG	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	391
XspI	CTAG	3 cut(s)	234, 255, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.