Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002438

Physical Location & Seq

Genomic Coordinates Reverse (-)

59356272 .. 59359301

Gene Structure 3030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004437

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTTTGACCATATAGCGAAGGAGTTAGATGCTATTCCTGCTGCTAGCTGCACAATAGAAAATGATTCTGTGTCCTTCCTCAAGCAGATTGTTTATCCTATATATGAAACATTGGCAGCGGAAGCTGCTAGAAACAATAACGGGAAAGCTGCGCATTCTGAATGGGGGAATTATGACGACTTCAATGAATACTATTGCTTTGTTTGCTTGTCACCTGCTTGTTTAGTTGAGCTGACCTATGAGGAGGGATTCAGCATTTTTGCTGAAGCCTTAAAAGAGGAAAAGGGTAGTTTGGATGTGTTGGTCATGTTTGGGGCTTATACTACAGCCAGAGGCATGGCTATCTCAAGTTTTGATTTTGACTTGGCCGAGGCCATGAAGGAGAACATCACTAAGAATGATTCATTGGAAGAAGAGGCAATTCTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0007049 GO:0007275 GO:0008150 GO:0009506 GO:0009555 GO:0009556 GO:0009987 GO:0012505 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0030054 GO:0032501 GO:0032502 GO:0034293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048589 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0055044 GO:0071944 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase

Protein Analysis

144

Amino Acids

15.91

Weight (kDa)

4.18

Isoelectric Point (pI)

48.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKS1_dom1	PF14288	15 - 66	2.1e-13	1,3-beta-glucan synthase subunit FKS1, domain-1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36850
fragaria_vesca	FvH4_5g07240
malus_domestica	MD06G1158200.v1.1 MD14G1164600.v1.1 MD14G1164700.v1.1 MD14G1164800.v1.1
prunus_persica	Prupe.5G158100_v2.0.a1 Prupe.5G158100_v2.0.a1 Prupe.5G181200_v2.0.a1
pyrus_communis	pycom06g14110 pycom06g14120 pycom06g14130 pycom14g13740
rosa_chinensis	RchiOBHm_Chr3g0493651 RchiOBHm_Chr7g0191411 RchiOBHm_Chr7g0191641
rosa_laevigata	RLG00000004437 RLG00000004438 RLG00000004457
rosa_multiflora	Rmu_sc0001123.1_g000007 Rmu_sc0002661.1_g000007 Rmu_sc0003634.1_g000001 Rmu_sc0003634.1_g000002
rosa_roxburghii	Rroxscaffold_157G00438350 Rroxscaffold_157G00438470 Rroxscaffold_2G00133560 Rroxscaffold_3G00263680 Rroxscaffold_3G00263840
rosa_rugosa	Rorug06G0510400 Rorug06G0510600
rosa_samantha	Rh7AG118000 Rh7AG119400 Rh7AG119500 Rh7BG120100 Rh7BG121600 Rh7BG121700 Rh7CG122900 Rh7CG124400 Rh7DG121000 Rh7DG122500
rosa_wichuraiana	Rw7G010190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	223
Acc16I	TGCGCA	1 cut(s)	153
Acc36I	ACCTGC	1 cut(s)	223
AciI	CCGC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	366
AcuI	CTGAAG	1 cut(s)	285
AgsI	TTSAA	1 cut(s)	184
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AluBI	AGCT	4 cut(s)	48, 125, 149, 232
AluI	AGCT	4 cut(s)	48, 125, 149, 232
AoxI	GGCC	2 cut(s)	366, 372
ApeKI	GCWGC	5 cut(s)	41, 48, 116, 125, 149
AspLEI	GCGC	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	204
AsuNHI	GCTAGC	1 cut(s)	44
BbvI	GCAGC	5 cut(s)	28, 35, 112, 128, 136
BfaI	CTAG	2 cut(s)	45, 129
BfmI	CTRYAG	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	5 cut(s)	42, 49, 117, 126, 150
BlsI	GCNGC	5 cut(s)	43, 50, 118, 127, 151
BmsI	GCATC	1 cut(s)	19
BmtI	GCTAGC	1 cut(s)	48
BpuEI	CTTGAG	2 cut(s)	65, 331
BsaJI	CCNNGG	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	5 cut(s)	28, 35, 112, 128, 136
BsgI	GTGCAG	1 cut(s)	34
BshFI	GGCC	2 cut(s)	368, 374
BsmI	GAATGC	1 cut(s)	154
BsnI	GGCC	2 cut(s)	368, 374
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	2 cut(s)	368, 374
BspMI	ACCTGC	1 cut(s)	223
BspOI	GCTAGC	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	369
Bst6I	CTCTTC	1 cut(s)	408
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	393
BstF5I	GGATG	1 cut(s)	301
BstHHI	GCGC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 122, 125, 204
BstSFI	CTRYAG	1 cut(s)	324
BstV1I	GCAGC	5 cut(s)	28, 35, 112, 128, 136
BstXI	CCANNNNNNTGG	1 cut(s)	337
BsuRI	GGCC	2 cut(s)	368, 374
BtsCI	GGATG	1 cut(s)	301
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	46
CfoI	GCGC	1 cut(s)	154
CviAII	CATG	3 cut(s)	307, 337, 376
DdeI	CTNAG	1 cut(s)	393
EaeI	YGGCCR	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	285
FaeI	CATG	3 cut(s)	310, 340, 379
FatI	CATG	3 cut(s)	306, 336, 375
Fnu4HI	GCNGC	5 cut(s)	42, 49, 117, 126, 150
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	5 cut(s)	42, 49, 117, 126, 150
FspBI	CTAG	2 cut(s)	45, 129
FspI	TGCGCA	1 cut(s)	153
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	5 cut(s)	42, 49, 117, 126, 150
HaeIII	GGCC	2 cut(s)	368, 374
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	3 cut(s)	310, 340, 379
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HinfI	GANTC	3 cut(s)	65, 249, 401
HphI	GGTGA	1 cut(s)	204
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	1 cut(s)	425
HpyAV	CCTTC	3 cut(s)	13, 85, 373
HpyCH4V	TGCA	1 cut(s)	51
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 122, 125, 204
HpyF3I	CTNAG	1 cut(s)	393
Hsp92II	CATG	3 cut(s)	310, 340, 379
HspAI	GCGC	1 cut(s)	152
LpnPI	CCDG	3 cut(s)	51, 228, 343
Lsp1109I	GCAGC	5 cut(s)	28, 35, 112, 128, 136
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	2 cut(s)	45, 129
MaeIII	GTNAC	1 cut(s)	210
MboII	GAAGA	2 cut(s)	422, 425
MluCI	AATT	2 cut(s)	169, 420
MnlI	CCTC	7 cut(s)	89, 235, 238, 271, 326, 364, 409
MseI	TTAA	2 cut(s)	272, 430
MspA1I	CMGCKG	1 cut(s)	119
Mva1269I	GAATGC	1 cut(s)	154
MwoI	GCNNNNNNNGC	4 cut(s)	38, 122, 125, 204
NheI	GCTAGC	1 cut(s)	44
NlaIII	CATG	3 cut(s)	310, 340, 379
NmeAIII	GCCGAG	1 cut(s)	394
NmuCI	GTSAC	1 cut(s)	210
NsbI	TGCGCA	1 cut(s)	153
PaqCI	CACCTGC	1 cut(s)	223
PctI	GAATGC	1 cut(s)	154
PfeI	GAWTC	3 cut(s)	65, 249, 401
PkrI	GCNGC	5 cut(s)	43, 50, 118, 127, 151
SaqAI	TTAA	2 cut(s)	272, 430
SatI	GCNGC	5 cut(s)	42, 49, 117, 126, 150
SetI	ASST	6 cut(s)	50, 127, 151, 217, 234, 239
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	324
SmlI	CTYRAG	2 cut(s)	80, 346
SmoI	CTYRAG	2 cut(s)	80, 346
Sse9I	AATT	2 cut(s)	169, 420
SsiI	CCGC	1 cut(s)	119
SspMI	CTAG	2 cut(s)	45, 129
TasI	AATT	2 cut(s)	169, 420
TfiI	GAWTC	3 cut(s)	65, 249, 401
Tru1I	TTAA	2 cut(s)	272, 430
Tru9I	TTAA	2 cut(s)	272, 430
TseFI	GTSAC	1 cut(s)	210
TseI	GCWGC	5 cut(s)	41, 48, 116, 125, 149
Tsp45I	GTSAC	1 cut(s)	210
TspDTI	ATGAA	4 cut(s)	120, 201, 392, 393
XspI	CTAG	2 cut(s)	45, 129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.