Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001123.1

Orthogroup ID

OG0002438

Physical Location & Seq

Genomic Coordinates Forward (+)

30274 .. 31094

Gene Structure 821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001123.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgaaaaagacaattgctatcttgagggcatttgttgaggagttggagtcgcttagcaaagatgcagatccttacggagttggaaggcaaattacagagttgcgcagaattaaaagcactgatgcaacattatctggggagctcacagcctacaatatcgtcccaatggaagcaccattactaaccaatgcaattggagtatttccggaagttagaggtgcgatattggcaattagatatactgaacaattccctaggctgctagctaagtttgagatatctggacaatgggatgcagataagtatgatcttctggaatatgtgttcagttttcagttttgtgtttccctacattttactcaagcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0007049 GO:0007275 GO:0008150 GO:0009506 GO:0009555 GO:0009556 GO:0009987 GO:0012505 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0030054 GO:0032501 GO:0032502 GO:0034293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048589 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0055044 GO:0071944 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase

Protein Analysis

122

Amino Acids

13.81

Weight (kDa)

5.15

Isoelectric Point (pI)

32.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36850
fragaria_vesca	FvH4_5g07240
malus_domestica	MD06G1158200.v1.1 MD14G1164600.v1.1 MD14G1164700.v1.1 MD14G1164800.v1.1
prunus_persica	Prupe.5G158100_v2.0.a1 Prupe.5G158100_v2.0.a1 Prupe.5G181200_v2.0.a1
pyrus_communis	pycom06g14110 pycom06g14120 pycom06g14130 pycom14g13740
rosa_chinensis	RchiOBHm_Chr3g0493651 RchiOBHm_Chr7g0191411 RchiOBHm_Chr7g0191641
rosa_laevigata	RLG00000004437 RLG00000004438 RLG00000004457
rosa_multiflora	Rmu_sc0001123.1_g000007 Rmu_sc0002661.1_g000007 Rmu_sc0003634.1_g000001 Rmu_sc0003634.1_g000002
rosa_roxburghii	Rroxscaffold_157G00438350 Rroxscaffold_157G00438470 Rroxscaffold_2G00133560 Rroxscaffold_3G00263680 Rroxscaffold_3G00263840
rosa_rugosa	Rorug06G0510400 Rorug06G0510600
rosa_samantha	Rh7AG118000 Rh7AG119400 Rh7AG119500 Rh7BG120100 Rh7BG121600 Rh7BG121700 Rh7CG122900 Rh7CG124400 Rh7DG121000 Rh7DG122500
rosa_wichuraiana	Rw7G010190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	104
AccIII	TCCGGA	1 cut(s)	205
AclWI	GGATC	1 cut(s)	62
AloI	GAACNNNNNNTCC	2 cut(s)	308, 340
AluBI	AGCT	2 cut(s)	142, 266
AluI	AGCT	2 cut(s)	142, 266
Alw21I	GWGCWC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	62
Aor13HI	TCCGGA	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	259
AspA2I	CCTAGG	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	105
AsuNHI	GCTAGC	1 cut(s)	262
AvrII	CCTAGG	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	144
BarI	GAAGNNNNNNTAC	4 cut(s)	76, 108, 162, 194
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	246
BfaI	CTAG	3 cut(s)	255, 263, 367
BisI	GCNGC	1 cut(s)	260
BlnI	CCTAGG	1 cut(s)	254
BlpI	GCTNAGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	261
BmsI	GCATC	3 cut(s)	52, 112, 283
BmtI	GCTAGC	1 cut(s)	266
Bpu1102I	GCTNAGC	1 cut(s)	53
BpuEI	CTTGAG	2 cut(s)	43, 345
BsaBI	GATNNNNATC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	254
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bse8I	GATNNNNATC	1 cut(s)	66
BseAI	TCCGGA	1 cut(s)	205
BseDI	CCNNGG	1 cut(s)	254
BseGI	GGATG	1 cut(s)	298
BseJI	GATNNNNATC	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	206
BslFI	GGGAC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp13I	TCCGGA	1 cut(s)	205
Bsp143I	GATC	2 cut(s)	67, 307
Bsp1720I	GCTNAGC	1 cut(s)	53
BspEI	TCCGGA	1 cut(s)	205
BspOI	GCTAGC	1 cut(s)	266
BspPI	GGATC	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	2 cut(s)	67, 307
BssT1I	CCWWGG	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	2 cut(s)	53, 267
BstF5I	GGATG	1 cut(s)	298
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	2 cut(s)	70, 310
BstMBI	GATC	2 cut(s)	67, 307
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	264
CfoI	GCGC	1 cut(s)	105
CviJI	RGCY	5 cut(s)	142, 149, 259, 266, 365
CviKI_1	RGCY	5 cut(s)	142, 149, 259, 266, 365
DdeI	CTNAG	2 cut(s)	53, 267
DpnI	GATC	2 cut(s)	69, 309
DpnII	GATC	2 cut(s)	67, 307
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	144
Eco32I	GATATC	1 cut(s)	279
Eco53kI	GAGCTC	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	142
EcoRV	GATATC	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	254
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	254
FaiI	YATR	3 cut(s)	240, 306, 321
FaqI	GGGAC	1 cut(s)	146
Fnu4HI	GCNGC	1 cut(s)	260
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	260
FspBI	CTAG	3 cut(s)	255, 263, 367
FspI	TGCGCA	1 cut(s)	104
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	260
HapII	CCGG	1 cut(s)	206
HhaI	GCGC	1 cut(s)	105
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HinfI	GANTC	1 cut(s)	47
HpaII	CCGG	1 cut(s)	206
Hpy188III	TCNNGA	4 cut(s)	22, 206, 282, 314
HpyAV	CCTTC	1 cut(s)	78
HpyCH4V	TGCA	4 cut(s)	65, 125, 191, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	2 cut(s)	53, 267
HspAI	GCGC	1 cut(s)	103
Kpn2I	TCCGGA	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	67, 307
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	4 cut(s)	120, 219, 267, 299
Lsp1109I	GCAGC	1 cut(s)	246
LweI	GCATC	3 cut(s)	52, 112, 283
MaeI	CTAG	3 cut(s)	255, 263, 367
MalI	GATC	2 cut(s)	69, 309
MboI	GATC	2 cut(s)	67, 307
MboII	GAAGA	1 cut(s)	302
MfeI	CAATTG	2 cut(s)	12, 192
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	6 cut(s)	12, 90, 108, 192, 231, 248
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	2 cut(s)	24, 61
MnlI	CCTC	3 cut(s)	18, 31, 209
MroI	TCCGGA	1 cut(s)	205
MseI	TTAA	1 cut(s)	111
MspI	CCGG	1 cut(s)	206
MunI	CAATTG	2 cut(s)	12, 192
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeII	GATC	2 cut(s)	67, 307
NheI	GCTAGC	1 cut(s)	262
NsbI	TGCGCA	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	261
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	67
SacI	GAGCTC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	1 cut(s)	260
Sau3AI	GATC	2 cut(s)	67, 307
SchI	GAGTC	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	3 cut(s)	144, 220, 268
SfaNI	GCATC	3 cut(s)	52, 112, 283
SgeI	CNNG	7 cut(s)	34, 147, 218, 267, 275, 294, 326
SmlI	CTYRAG	2 cut(s)	22, 360
SmoI	CTYRAG	2 cut(s)	22, 360
Sse9I	AATT	6 cut(s)	12, 90, 108, 192, 231, 248
SspMI	CTAG	3 cut(s)	255, 263, 367
SstI	GAGCTC	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	254
TasI	AATT	6 cut(s)	12, 90, 108, 192, 231, 248
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	90
TspRI	CASTG	1 cut(s)	124
XmaJI	CCTAGG	1 cut(s)	254
XspI	CTAG	3 cut(s)	255, 263, 367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.