Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002438

Physical Location & Seq

Genomic Coordinates Forward (+)

10382587 .. 10384367

Gene Structure 1781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG122500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGCGTGAATCTGAGACTGCTAACTTTGGAGACTATATAGAGATGAAAAAGACAATTGCTATCTTGAGGGCATTTGTTGAGGAGTTGGAGTCGCTTAGCAAAGATGCAGATCCTTACGGAGTTGGAAGGCAAATTACAGAGTTGTGCAGAATTAAAAGCACTGATGCAACATTATCTGGGGAGCTCACAACCTACAATATCGTCCCAATGGAAGCACCATTACTAACCAATGCAATTGGAGTATTTCCGGAAGTTAGAGGTGCGATATTGGCAATTAGATATACTGAACAATTCCCTAGGCTGCTAGCTAAGTTTGAGATATCTGGACAATGGGATGCAGATAAAAAGACAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0007049 GO:0007275 GO:0008150 GO:0009506 GO:0009555 GO:0009556 GO:0009987 GO:0012505 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0030054 GO:0032501 GO:0032502 GO:0034293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048589 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0055044 GO:0071944 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase

Protein Analysis

118

Amino Acids

13.25

Weight (kDa)

4.89

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36850
fragaria_vesca	FvH4_5g07240
malus_domestica	MD06G1158200.v1.1 MD14G1164600.v1.1 MD14G1164700.v1.1 MD14G1164800.v1.1
prunus_persica	Prupe.5G158100_v2.0.a1 Prupe.5G158100_v2.0.a1 Prupe.5G181200_v2.0.a1
pyrus_communis	pycom06g14110 pycom06g14120 pycom06g14130 pycom14g13740
rosa_chinensis	RchiOBHm_Chr3g0493651 RchiOBHm_Chr7g0191411 RchiOBHm_Chr7g0191641
rosa_laevigata	RLG00000004437 RLG00000004438 RLG00000004457
rosa_multiflora	Rmu_sc0001123.1_g000007 Rmu_sc0002661.1_g000007 Rmu_sc0003634.1_g000001 Rmu_sc0003634.1_g000002
rosa_roxburghii	Rroxscaffold_157G00438350 Rroxscaffold_157G00438470 Rroxscaffold_2G00133560 Rroxscaffold_3G00263680 Rroxscaffold_3G00263840
rosa_rugosa	Rorug06G0510400 Rorug06G0510600
rosa_samantha	Rh7AG118000 Rh7AG119400 Rh7AG119500 Rh7BG120100 Rh7BG121600 Rh7BG121700 Rh7CG122900 Rh7CG124400 Rh7DG121000 Rh7DG122500
rosa_wichuraiana	Rw7G010190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	247
AclWI	GGATC	1 cut(s)	104
AluBI	AGCT	2 cut(s)	184, 308
AluI	AGCT	2 cut(s)	184, 308
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	2 cut(s)	8, 24
AlwI	GGATC	1 cut(s)	104
Aor13HI	TCCGGA	1 cut(s)	247
ApeKI	GCWGC	1 cut(s)	301
AspA2I	CCTAGG	1 cut(s)	296
AsuNHI	GCTAGC	1 cut(s)	304
AvrII	CCTAGG	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	186
BarI	GAAGNNNNNNTAC	4 cut(s)	118, 150, 204, 236
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	288
BcoDI	GTCTC	2 cut(s)	8, 24
BfaI	CTAG	2 cut(s)	297, 305
BisI	GCNGC	1 cut(s)	302
BlnI	CCTAGG	1 cut(s)	296
BlpI	GCTNAGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	303
BmsI	GCATC	3 cut(s)	94, 154, 325
BmtI	GCTAGC	1 cut(s)	308
Bpu1102I	GCTNAGC	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	85
BsaBI	GATNNNNATC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	296
BsaWI	WCCGGW	1 cut(s)	247
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bse8I	GATNNNNATC	1 cut(s)	108
BseAI	TCCGGA	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	296
BseGI	GGATG	1 cut(s)	340
BseJI	GATNNNNATC	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	288
BsgI	GTGCAG	1 cut(s)	166
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	248
BslFI	GGGAC	1 cut(s)	188
BsmAI	GTCTC	2 cut(s)	8, 24
BsmFI	GGGAC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp13I	TCCGGA	1 cut(s)	247
Bsp143I	GATC	1 cut(s)	109
Bsp1720I	GCTNAGC	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	4
BspEI	TCCGGA	1 cut(s)	247
BspOI	GCTAGC	1 cut(s)	308
BspPI	GGATC	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	3 cut(s)	12, 95, 309
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	2 cut(s)	8, 24
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstV1I	GCAGC	1 cut(s)	288
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	306
CviJI	RGCY	3 cut(s)	184, 301, 308
CviKI_1	RGCY	3 cut(s)	184, 301, 308
DdeI	CTNAG	3 cut(s)	12, 95, 309
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
Ecl136II	GAGCTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	186
Eco32I	GATATC	1 cut(s)	321
Eco53kI	GAGCTC	1 cut(s)	184
EcoICRI	GAGCTC	1 cut(s)	184
EcoRV	GATATC	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	296
EcoT38I	GRGCYC	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	296
FaiI	YATR	3 cut(s)	36, 38, 282
FaqI	GGGAC	1 cut(s)	188
Fnu4HI	GCNGC	1 cut(s)	302
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	302
FspBI	CTAG	2 cut(s)	297, 305
GluI	GCNGC	1 cut(s)	302
HapII	CCGG	1 cut(s)	248
HinfI	GANTC	2 cut(s)	8, 89
HpaII	CCGG	1 cut(s)	248
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	3 cut(s)	64, 248, 324
HpyAV	CCTTC	1 cut(s)	120
HpyCH4V	TGCA	5 cut(s)	107, 147, 167, 233, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	3 cut(s)	12, 95, 309
Kpn2I	TCCGGA	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	3 cut(s)	162, 261, 309
Lsp1109I	GCAGC	1 cut(s)	288
LweI	GCATC	3 cut(s)	94, 154, 325
MaeI	CTAG	2 cut(s)	297, 305
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MfeI	CAATTG	2 cut(s)	54, 234
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	6 cut(s)	54, 132, 150, 234, 273, 290
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	2 cut(s)	66, 103
MnlI	CCTC	3 cut(s)	60, 73, 251
MroI	TCCGGA	1 cut(s)	247
MseI	TTAA	1 cut(s)	153
MspI	CCGG	1 cut(s)	248
MunI	CAATTG	2 cut(s)	54, 234
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeII	GATC	1 cut(s)	109
NheI	GCTAGC	1 cut(s)	304
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	303
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
Psp124BI	GAGCTC	1 cut(s)	186
PsuI	RGATCY	1 cut(s)	109
SacI	GAGCTC	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	302
Sau3AI	GATC	1 cut(s)	109
SchI	GAGTC	1 cut(s)	98
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	4 cut(s)	186, 194, 262, 310
SfaNI	GCATC	3 cut(s)	94, 154, 325
SgeI	CNNG	7 cut(s)	17, 76, 189, 260, 309, 317, 336
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	6 cut(s)	54, 132, 150, 234, 273, 290
SspMI	CTAG	2 cut(s)	297, 305
SstI	GAGCTC	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	296
TasI	AATT	6 cut(s)	54, 132, 150, 234, 273, 290
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	1 cut(s)	301
TspDTI	ATGAA	1 cut(s)	59
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	1 cut(s)	166
XmaJI	CCTAGG	1 cut(s)	296
XspI	CTAG	2 cut(s)	297, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.