Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002438

Physical Location & Seq

Genomic Coordinates Reverse (-)

59361216 .. 59363408

Gene Structure 2193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004438

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCAATTCAAGCCGATCGAGGATGCAAAAATCTCCAGAATTCTGTGTGAGCAGGCGTATAGTATGGCGCAAAATCTTGATCCAACTAGTGATGGTAGAGGAGTTCTTCAGTTTAAGACTGGTTTGATGTCTGTAATTAAGCAAAAACTTGCTAGAAGGGATGGGGGTCAAATAGATCGCAATCGTGATATTGAGCACCTCTGGGAATTTTACTGGCGCTACAAGCGACGACATTGCCCAGAGGATATCCAAAGGGAGAAGCAGAGAATGCATGAATCTGGGACTTTTACTGCTAACTTTGGAGACTATATAGAGATGAAAAAGACAATTGCTATCTTGAGGGCATTAGTTGAGGAGTTGGAGTTGCGTAGCAAAGATGCAGATCCTTACAGAGTTGGAAGGCAAATTACAGAGTTGCGCAGAATTAAAAGCACTATCTGGGGAGCTCACAGCCTACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0007049 GO:0007275 GO:0008150 GO:0009506 GO:0009555 GO:0009556 GO:0009987 GO:0012505 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0030054 GO:0032501 GO:0032502 GO:0034293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048589 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0055044 GO:0071944 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase

Protein Analysis

154

Amino Acids

18.1

Weight (kDa)

9.44

Isoelectric Point (pI)

61.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36850
fragaria_vesca	FvH4_5g07240
malus_domestica	MD06G1158200.v1.1 MD14G1164600.v1.1 MD14G1164700.v1.1 MD14G1164800.v1.1
prunus_persica	Prupe.5G158100_v2.0.a1 Prupe.5G158100_v2.0.a1 Prupe.5G181200_v2.0.a1
pyrus_communis	pycom06g14110 pycom06g14120 pycom06g14130 pycom14g13740
rosa_chinensis	RchiOBHm_Chr3g0493651 RchiOBHm_Chr7g0191411 RchiOBHm_Chr7g0191641
rosa_laevigata	RLG00000004437 RLG00000004438 RLG00000004457
rosa_multiflora	Rmu_sc0001123.1_g000007 Rmu_sc0002661.1_g000007 Rmu_sc0003634.1_g000001 Rmu_sc0003634.1_g000002
rosa_roxburghii	Rroxscaffold_157G00438350 Rroxscaffold_157G00438470 Rroxscaffold_2G00133560 Rroxscaffold_3G00263680 Rroxscaffold_3G00263840
rosa_rugosa	Rorug06G0510400 Rorug06G0510600
rosa_samantha	Rh7AG118000 Rh7AG119400 Rh7AG119500 Rh7BG120100 Rh7BG121600 Rh7BG121700 Rh7CG122900 Rh7CG124400 Rh7DG121000 Rh7DG122500
rosa_wichuraiana	Rw7G010190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	419
AclWI	GGATC	2 cut(s)	74, 377
AcsI	RAATTY	2 cut(s)	39, 206
AcuI	CTGAAG	1 cut(s)	92
AgsI	TTSAA	1 cut(s)	10
AhlI	ACTAGT	1 cut(s)	86
AluBI	AGCT	1 cut(s)	446
AluI	AGCT	1 cut(s)	446
Alw21I	GWGCWC	2 cut(s)	198, 448
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	2 cut(s)	74, 377
ApoI	RAATTY	2 cut(s)	39, 206
AspLEI	GCGC	3 cut(s)	70, 219, 420
BanII	GRGCYC	1 cut(s)	448
BarI	GAAGNNNNNNTAC	2 cut(s)	391, 423
Bbv12I	GWGCWC	2 cut(s)	198, 448
BccI	CCATC	2 cut(s)	86, 155
BcgI	CGANNNNNNTGC	2 cut(s)	216, 250
BcoDI	GTCTC	1 cut(s)	297
BcuI	ACTAGT	1 cut(s)	86
BfaI	CTAG	2 cut(s)	87, 153
BfoI	RGCGCY	1 cut(s)	220
BmsI	GCATC	2 cut(s)	13, 367
BpmI	CTGGAG	1 cut(s)	19
BpuEI	CTTGAG	1 cut(s)	358
BsaBI	GATNNNNATC	2 cut(s)	180, 381
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bse1I	ACTGG	2 cut(s)	124, 218
Bse3DI	GCAATG	1 cut(s)	232
Bse8I	GATNNNNATC	2 cut(s)	180, 381
BseGI	GGATG	2 cut(s)	28, 166
BseJI	GATNNNNATC	2 cut(s)	180, 381
BseMI	GCAATG	1 cut(s)	232
BseNI	ACTGG	2 cut(s)	124, 218
BseRI	GAGGAG	2 cut(s)	114, 368
Bsh1285I	CGRYCG	1 cut(s)	18
BsiEI	CGRYCG	1 cut(s)	18
BsiHKAI	GWGCWC	2 cut(s)	198, 448
BslFI	GGGAC	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	297
BsmFI	GGGAC	1 cut(s)	295
BsmI	GAATGC	1 cut(s)	273
Bsp1286I	GDGCHC	2 cut(s)	198, 448
Bsp143I	GATC	4 cut(s)	15, 79, 175, 382
BspPI	GGATC	2 cut(s)	74, 377
BsrDI	GCAATG	1 cut(s)	232
BsrI	ACTGG	2 cut(s)	124, 218
BssMI	GATC	4 cut(s)	15, 79, 175, 382
BstAPI	GCANNNNNTGC	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	54
BstF5I	GGATG	2 cut(s)	28, 166
BstH2I	RGCGCY	1 cut(s)	220
BstHHI	GCGC	3 cut(s)	70, 219, 420
BstKTI	GATC	4 cut(s)	18, 82, 178, 385
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	4 cut(s)	15, 79, 175, 382
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 223, 268
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BtsCI	GGATG	2 cut(s)	28, 166
Cac8I	GCNNGC	1 cut(s)	54
CfoI	GCGC	3 cut(s)	70, 219, 420
CviAII	CATG	1 cut(s)	272
CviJI	RGCY	3 cut(s)	13, 446, 453
CviKI_1	RGCY	3 cut(s)	13, 446, 453
DpnI	GATC	4 cut(s)	17, 81, 177, 384
DpnII	GATC	4 cut(s)	15, 79, 175, 382
Ecl136II	GAGCTC	1 cut(s)	446
Eco24I	GRGCYC	1 cut(s)	448
Eco32I	GATATC	1 cut(s)	247
Eco53kI	GAGCTC	1 cut(s)	446
Eco57I	CTGAAG	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	446
EcoRI	GAATTC	1 cut(s)	39
EcoRV	GATATC	1 cut(s)	247
EcoT22I	ATGCAT	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	448
FaeI	CATG	1 cut(s)	275
FaiI	YATR	5 cut(s)	60, 65, 273, 309, 311
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	1 cut(s)	271
FokI	GGATG	2 cut(s)	35, 173
FriOI	GRGCYC	1 cut(s)	448
FspBI	CTAG	2 cut(s)	87, 153
FspI	TGCGCA	1 cut(s)	419
GlaI	GCGC	3 cut(s)	69, 218, 419
GsuI	CTGGAG	1 cut(s)	19
HaeII	RGCGCY	1 cut(s)	220
HhaI	GCGC	3 cut(s)	70, 219, 420
Hin1II	CATG	1 cut(s)	275
Hin6I	GCGC	3 cut(s)	68, 217, 418
HinP1I	GCGC	3 cut(s)	68, 217, 418
HinfI	GANTC	1 cut(s)	275
Hpy188III	TCNNGA	4 cut(s)	36, 77, 185, 337
Hpy99I	CGWCG	1 cut(s)	231
HpyAV	CCTTC	2 cut(s)	150, 393
HpyCH4V	TGCA	4 cut(s)	4, 26, 271, 380
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 223, 268
Hsp92II	CATG	1 cut(s)	275
HspAI	GCGC	3 cut(s)	68, 217, 418
Kzo9I	GATC	4 cut(s)	15, 79, 175, 382
LmnI	GCTCC	1 cut(s)	443
LpnPI	CCDG	8 cut(s)	38, 49, 105, 187, 199, 252, 264, 424
LweI	GCATC	2 cut(s)	13, 367
MaeI	CTAG	2 cut(s)	87, 153
MalI	GATC	4 cut(s)	17, 81, 177, 384
MboI	GATC	4 cut(s)	15, 79, 175, 382
MboII	GAAGA	1 cut(s)	98
MfeI	CAATTG	1 cut(s)	327
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	2 cut(s)	198, 448
MluCI	AATT	7 cut(s)	5, 39, 135, 206, 327, 405, 423
MmeI	TCCRAC	3 cut(s)	107, 339, 376
MnlI	CCTC	6 cut(s)	13, 92, 209, 235, 333, 346
Mph1103I	ATGCAT	1 cut(s)	273
MseI	TTAA	3 cut(s)	114, 138, 426
MunI	CAATTG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	273
MwoI	GCNNNNNNNGC	3 cut(s)	10, 223, 268
NdeII	GATC	4 cut(s)	15, 79, 175, 382
NlaIII	CATG	1 cut(s)	275
NsbI	TGCGCA	1 cut(s)	419
NsiI	ATGCAT	1 cut(s)	273
PctI	GAATGC	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	275
Ple19I	CGATCG	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	382
PvuI	CGATCG	1 cut(s)	18
SacI	GAGCTC	1 cut(s)	448
SaqAI	TTAA	3 cut(s)	114, 138, 426
Sau3AI	GATC	4 cut(s)	15, 79, 175, 382
SduI	GDGCHC	2 cut(s)	198, 448
SetI	ASST	2 cut(s)	201, 448
SfaNI	GCATC	2 cut(s)	13, 367
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
SpeI	ACTAGT	1 cut(s)	86
Sse9I	AATT	7 cut(s)	5, 39, 135, 206, 327, 405, 423
SspMI	CTAG	2 cut(s)	87, 153
SstI	GAGCTC	1 cut(s)	448
TaqI	TCGA	1 cut(s)	18
TasI	AATT	7 cut(s)	5, 39, 135, 206, 327, 405, 423
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	3 cut(s)	114, 138, 426
Tru9I	TTAA	3 cut(s)	114, 138, 426
TspDTI	ATGAA	2 cut(s)	288, 332
XapI	RAATTY	2 cut(s)	39, 206
XspI	CTAG	2 cut(s)	87, 153
Zsp2I	ATGCAT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.