Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002438

Physical Location & Seq

Genomic Coordinates Reverse (-)

40937560 .. 40939928

Gene Structure 2369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45639

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGTTTGACCATATGGCGAAGGAGTTAGATGCTATTCCTGCTGCTGGCTGCACAATAGAAAATGATTATGTGTCCTTCCTCAAGCAGATTGTTTATCCTATGCATGAAACATTGGCAGCGGAAGCTGCTGGAAACAATAATGGGAAAGCTGCGCATTTCAGCGTGGCGGAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0007049 GO:0007275 GO:0008150 GO:0009506 GO:0009555 GO:0009556 GO:0009987 GO:0012505 GO:0016020 GO:0019953 GO:0022402 GO:0022414 GO:0030054 GO:0032501 GO:0032502 GO:0034293 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048589 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0055044 GO:0071944 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase

Protein Analysis

58

Amino Acids

6.27

Weight (kDa)

4.76

Isoelectric Point (pI)

31.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36850
fragaria_vesca	FvH4_5g07240
malus_domestica	MD06G1158200.v1.1 MD14G1164600.v1.1 MD14G1164700.v1.1 MD14G1164800.v1.1
prunus_persica	Prupe.5G158100_v2.0.a1 Prupe.5G158100_v2.0.a1 Prupe.5G181200_v2.0.a1
pyrus_communis	pycom06g14110 pycom06g14120 pycom06g14130 pycom14g13740
rosa_chinensis	RchiOBHm_Chr3g0493651 RchiOBHm_Chr7g0191411 RchiOBHm_Chr7g0191641
rosa_laevigata	RLG00000004437 RLG00000004438 RLG00000004457
rosa_multiflora	Rmu_sc0001123.1_g000007 Rmu_sc0002661.1_g000007 Rmu_sc0003634.1_g000001 Rmu_sc0003634.1_g000002
rosa_roxburghii	Rroxscaffold_157G00438350 Rroxscaffold_157G00438470 Rroxscaffold_2G00133560 Rroxscaffold_3G00263680 Rroxscaffold_3G00263840
rosa_rugosa	Rorug06G0510400 Rorug06G0510600
rosa_samantha	Rh7AG118000 Rh7AG119400 Rh7AG119500 Rh7BG120100 Rh7BG121600 Rh7BG121700 Rh7CG122900 Rh7CG124400 Rh7DG121000 Rh7DG122500
rosa_wichuraiana	Rw7G010190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	153
AciI	CCGC	2 cut(s)	119, 167
AfiI	CCNNNNNNNGG	1 cut(s)	44
AluBI	AGCT	2 cut(s)	125, 149
AluI	AGCT	2 cut(s)	125, 149
ApeKI	GCWGC	5 cut(s)	41, 48, 116, 125, 149
AspLEI	GCGC	1 cut(s)	154
BbvI	GCAGC	5 cut(s)	28, 35, 112, 128, 136
BisI	GCNGC	5 cut(s)	42, 49, 117, 126, 150
BlsI	GCNGC	5 cut(s)	43, 50, 118, 127, 151
BmsI	GCATC	1 cut(s)	19
BpuEI	CTTGAG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseXI	GCAGC	5 cut(s)	28, 35, 112, 128, 136
BsgI	GTGCAG	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	44
BspACI	CCGC	2 cut(s)	119, 167
BstC8I	GCNNGC	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 122, 125
BstV1I	GCAGC	5 cut(s)	28, 35, 112, 128, 136
Cac8I	GCNNGC	1 cut(s)	46
CfoI	GCGC	1 cut(s)	154
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	3 cut(s)	48, 125, 149
CviKI_1	RGCY	3 cut(s)	48, 125, 149
EcoT22I	ATGCAT	1 cut(s)	105
FaeI	CATG	1 cut(s)	107
FaiI	YATR	6 cut(s)	12, 14, 69, 101, 105, 175
FatI	CATG	1 cut(s)	103
FauNDI	CATATG	1 cut(s)	12
Fnu4HI	GCNGC	5 cut(s)	42, 49, 117, 126, 150
Fsp4HI	GCNGC	5 cut(s)	42, 49, 117, 126, 150
FspI	TGCGCA	1 cut(s)	153
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	5 cut(s)	42, 49, 117, 126, 150
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	13, 85
HpyCH4V	TGCA	2 cut(s)	51, 103
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 122, 125
Hsp92II	CATG	1 cut(s)	107
HspAI	GCGC	1 cut(s)	152
LpnPI	CCDG	3 cut(s)	30, 51, 114
Lsp1109I	GCAGC	5 cut(s)	28, 35, 112, 128, 136
LweI	GCATC	1 cut(s)	19
MluCI	AATT	1 cut(s)	170
MnlI	CCTC	1 cut(s)	89
Mph1103I	ATGCAT	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	119
MwoI	GCNNNNNNNGC	3 cut(s)	38, 122, 125
NdeI	CATATG	1 cut(s)	12
NlaIII	CATG	1 cut(s)	107
NsbI	TGCGCA	1 cut(s)	153
NsiI	ATGCAT	1 cut(s)	105
PkrI	GCNGC	5 cut(s)	43, 50, 118, 127, 151
SatI	GCNGC	5 cut(s)	42, 49, 117, 126, 150
SetI	ASST	2 cut(s)	127, 151
SfaNI	GCATC	1 cut(s)	19
SgeI	CNNG	5 cut(s)	50, 57, 94, 116, 141
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	1 cut(s)	170
SsiI	CCGC	2 cut(s)	119, 167
TasI	AATT	1 cut(s)	170
TseI	GCWGC	5 cut(s)	41, 48, 116, 125, 149
TspDTI	ATGAA	1 cut(s)	120
Zsp2I	ATGCAT	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.