Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002707

Physical Location & Seq

Genomic Coordinates Forward (+)

4943689 .. 4947139

Gene Structure 3451 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1072400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTCCAGGGCTCGCGTCTACGCGGACGTCAACGTTCAGCGCCCAAGAGATTACTGGGATTACGAATCTCACACTCTTCAATGGGGTGAACAAGGTGACTATGAGGTTGTTCGGAAGGTTGGAAGAGGAAAATACAGTGAGGTCTTTGAAGGTGTGAATGTCACCAACAATGAAAAATGTGTTATCAAGATCCTTAAACCCGTCAAGAAAAAGAAGATTAAAAGGGAGATAAAGATACTGCAGAATCTTTGTGGTGGTACAAATATTGTGAAGCTGCTTGATATTGTTAGAGATGAACATTCAAAAACTCCTAGCTTGATCTTTGAATATGTGAACAGTATAGATTTCAAAGTGTTGTACCCCACACTGACGGATTATGACATTCGCTACTATATATATGAACTTCTCAAGGCATTGGATTACTGCCATTCGCAGGGCATAATGCATCGAGATGTCAAGCCTCACAATGTTATGATCGATCATGAGCTCCGAAAACTTCGCTTGATTGATTGGGGTCTCGCTGAATTCTACCATCCTGGCAAGGAGTACCATGTCCGGGTAGCTTCAAGGCACTATAAGGGGCCTGAACTCCTTGTGGATTTGCAAGATTATGACTATTCGTTAGACTTGTGGAGCCTTGGCTGTATGTTTGCAGGAATGATCTTTCGCAAGGAACAATTCTTCTATGGTCGTGACAATCAGGACCAGCTAGCGAAAATTGCTAAGGTTCTTGGAACAGACGAATTAAATGCATATTTGAATAAATATAACCTTGTGCTTGATCCTCAGCTCGAGGCTCTTGTTGGAAGGCACAATAAGAAGCCATGGTCAAGATTTATCAATGCAGAAAATCAGCATCTGGTTTCTCCAGAGGCCATTGATTTTCTAGATAAGCTTCTTCGATATGATCACCAGGAAAGGCTTACAGCAAGAGAAGCAATGGATCATGCATACTTCTCCCAAGTGAGAAGTGCAGAAAATAGCTGGATACAGACGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

334

Amino Acids

39.39

Weight (kDa)

7.7

Isoelectric Point (pI)

33.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	34 - 319	1.6e-61	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	36 - 241	7.5e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300
malus_domestica	MD08G1087400.v1.1 MD15G1072400.v1.1 MD15G1314700.v1.1
prunus_persica	Prupe.1G425000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0357221 RchiOBHm_Chr1g0362391 RchiOBHm_Chr2g0131551 RchiOBHm_Chr6g0309321
rosa_laevigata	RLG00000009840 RLG00000010574 RLG00000021364 RLG00000031506
rosa_multiflora	Rmu_sc0003576.1_g000007 Rmu_sc0015692.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228160 Rroxscaffold_6G00412270 Rroxscaffold_7G00159490
rosa_rugosa	Rorug01G0255000 Rorug05G0444500 Rorug05G0444500 Rorug06G0371000
rosa_samantha	Rh2BG357900 Rh5AG062100 Rh5AG134700 Rh5BG310400 Rh5DG320900 Rh6AG235600 Rh6AG484400 Rh6BG493500 Rh6CG498300 Rh6DG484800
rosa_wichuraiana	Rw6G028820 Rw6G042170 Rw7G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	30
AccI	GTMKAC	1 cut(s)	18
AccII	CGCG	2 cut(s)	15, 23
AciI	CCGC	1 cut(s)	23
AclI	AACGTT	1 cut(s)	33
AclWI	GGATC	3 cut(s)	184, 776, 951
AcsI	RAATTY	1 cut(s)	524
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	3 cut(s)	259, 359, 548
AfiI	CCNNNNNNNGG	2 cut(s)	433, 556
AgsI	TTSAA	7 cut(s)	80, 149, 303, 326, 349, 567, 760
AjnI	CCWGG	3 cut(s)	5, 535, 912
AluBI	AGCT	8 cut(s)	274, 315, 487, 563, 709, 790, 895, 984
AluI	AGCT	8 cut(s)	274, 315, 487, 563, 709, 790, 895, 984
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	1 cut(s)	521
AlwI	GGATC	3 cut(s)	184, 776, 951
AlwNI	CAGNNNCTG	1 cut(s)	859
Ama87I	CYCGRG	1 cut(s)	791
AoxI	GGCC	2 cut(s)	581, 873
ApeKI	GCWGC	1 cut(s)	274
ApoI	RAATTY	1 cut(s)	524
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	581, 703
AsuC2I	CCSGG	1 cut(s)	557
AsuHPI	GGTGA	4 cut(s)	98, 107, 154, 902
AsuNHI	GCTAGC	1 cut(s)	709
AvaI	CYCGRG	1 cut(s)	791
AvaII	GGWCC	1 cut(s)	703
BanII	GRGCYC	2 cut(s)	13, 489
Bbv12I	GWGCWC	1 cut(s)	489
BbvCI	CCTCAGC	1 cut(s)	786
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	1 cut(s)	540
BcgI	CGANNNNNNTGC	2 cut(s)	731, 765
BciT130I	CCWGG	3 cut(s)	7, 537, 914
BciVI	GTATCC	1 cut(s)	981
BclI	TGATCA	1 cut(s)	907
BcnI	CCSGG	1 cut(s)	557
BcoDI	GTCTC	1 cut(s)	521
BfaI	CTAG	3 cut(s)	312, 710, 887
BfmI	CTRYAG	1 cut(s)	239
BfoI	RGCGCY	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	981
BisI	GCNGC	1 cut(s)	275
BlsI	GCNGC	1 cut(s)	276
Bme1390I	CCNGG	4 cut(s)	7, 537, 557, 914
Bme18I	GGWCC	1 cut(s)	703
BmeT110I	CYCGRG	1 cut(s)	791
BmgT120I	GGNCC	2 cut(s)	581, 703
BmiI	GGNNCC	2 cut(s)	582, 635
BmrFI	CCNGG	4 cut(s)	7, 537, 557, 914
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	2 cut(s)	454, 865
BmtI	GCTAGC	1 cut(s)	713
BmuI	ACTGGG	1 cut(s)	64
BpmI	CTGGAG	1 cut(s)	852
Bpu10I	CCTNAGC	2 cut(s)	723, 786
BpuEI	CTTGAG	1 cut(s)	392
BpuMI	CCSGG	1 cut(s)	557
Bsa29I	ATCGAT	1 cut(s)	477
BsaHI	GRCGYC	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	521
BsaJI	CCNNGG	3 cut(s)	6, 637, 824
Bsc4I	CCNNNNNNNGG	2 cut(s)	433, 556
Bse1I	ACTGG	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	945
BseBI	CCWGG	3 cut(s)	7, 537, 914
BseCI	ATCGAT	1 cut(s)	477
BseDI	CCNNGG	3 cut(s)	6, 637, 824
BseGI	GGATG	1 cut(s)	532
BseLI	CCNNNNNNNGG	2 cut(s)	433, 556
BseMI	GCAATG	1 cut(s)	945
BseMII	CTCAG	1 cut(s)	800
BseNI	ACTGG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	261
BsgI	GTGCAG	1 cut(s)	993
Bsh1236I	CGCG	2 cut(s)	15, 23
BshFI	GGCC	2 cut(s)	583, 875
BshVI	ATCGAT	1 cut(s)	477
BsiHKAI	GWGCWC	1 cut(s)	489
BsiHKCI	CYCGRG	1 cut(s)	791
BsiSI	CCGG	1 cut(s)	556
BslI	CCNNNNNNNGG	2 cut(s)	433, 556
BsmAI	GTCTC	1 cut(s)	521
BsnI	GGCC	2 cut(s)	583, 875
Bso31I	GGTCTC	1 cut(s)	521
BsoBI	CYCGRG	1 cut(s)	791
Bsp1286I	GDGCHC	2 cut(s)	13, 489
Bsp143I	GATC	8 cut(s)	189, 318, 474, 478, 660, 781, 907, 943
Bsp19I	CCATGG	1 cut(s)	824
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	2 cut(s)	583, 875
BspCNI	CTCAG	1 cut(s)	799
BspDI	ATCGAT	1 cut(s)	477
BspFNI	CGCG	2 cut(s)	15, 23
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	2 cut(s)	582, 635
BspMAI	CTGCAG	1 cut(s)	243
BspOI	GCTAGC	1 cut(s)	713
BspPI	GGATC	3 cut(s)	184, 776, 951
BspTNI	GGTCTC	1 cut(s)	521
BsrDI	GCAATG	1 cut(s)	945
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	3 cut(s)	6, 637, 824
BssMI	GATC	8 cut(s)	189, 318, 474, 478, 660, 781, 907, 943
BssNI	GRCGYC	1 cut(s)	27
BssT1I	CCWWGG	2 cut(s)	637, 824
Bst2UI	CCWGG	3 cut(s)	7, 537, 914
Bst4CI	ACNGT	2 cut(s)	137, 338
Bst6I	CTCTTC	2 cut(s)	81, 118
BstACI	GRCGYC	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	13, 711
BstDEI	CTNAG	2 cut(s)	723, 786
BstDSI	CCRYGG	1 cut(s)	824
BstF5I	GGATG	1 cut(s)	532
BstFNI	CGCG	2 cut(s)	15, 23
BstH2I	RGCGCY	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	8 cut(s)	192, 321, 477, 481, 663, 784, 910, 946
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	8 cut(s)	189, 318, 474, 478, 660, 781, 907, 943
BstMWI	GCNNNNNNNGC	2 cut(s)	719, 935
BstNI	CCWGG	3 cut(s)	7, 537, 914
BstSCI	CCNGG	4 cut(s)	5, 535, 555, 912
BstSFI	CTRYAG	1 cut(s)	239
BstUI	CGCG	2 cut(s)	15, 23
BstV1I	GCAGC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
Bsu15I	ATCGAT	1 cut(s)	477
BsuI	GTATCC	1 cut(s)	981
BsuRI	GGCC	2 cut(s)	583, 875
BsuTUI	ATCGAT	1 cut(s)	477
BtgI	CCRYGG	1 cut(s)	824
BtsCI	GGATG	1 cut(s)	532
BtsIMutI	CAGTG	2 cut(s)	142, 365
Cac8I	GCNNGC	2 cut(s)	13, 711
CaiI	CAGNNNCTG	1 cut(s)	859
CciI	TCATGA	1 cut(s)	481
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	2 cut(s)	581, 703
ClaI	ATCGAT	1 cut(s)	477
CseI	GACGC	1 cut(s)	4
Csp6I	GTAC	3 cut(s)	258, 358, 547
CviAII	CATG	4 cut(s)	482, 551, 825, 947
CviQI	GTAC	3 cut(s)	258, 358, 547
DdeI	CTNAG	2 cut(s)	723, 786
DpnI	GATC	8 cut(s)	191, 320, 476, 480, 662, 783, 909, 945
DpnII	GATC	8 cut(s)	189, 318, 474, 478, 660, 781, 907, 943
Eam1104I	CTCTTC	2 cut(s)	81, 118
EarI	CTCTTC	2 cut(s)	81, 118
Ecl136II	GAGCTC	1 cut(s)	487
Eco130I	CCWWGG	2 cut(s)	637, 824
Eco24I	GRGCYC	2 cut(s)	13, 489
Eco31I	GGTCTC	1 cut(s)	521
Eco47I	GGWCC	1 cut(s)	703
Eco53kI	GAGCTC	1 cut(s)	487
Eco88I	CYCGRG	1 cut(s)	791
EcoICRI	GAGCTC	1 cut(s)	487
EcoO109I	RGGNCCY	1 cut(s)	581
EcoRI	GAATTC	1 cut(s)	524
EcoRII	CCWGG	3 cut(s)	5, 535, 912
EcoT14I	CCWWGG	2 cut(s)	637, 824
EcoT22I	ATGCAT	3 cut(s)	447, 754, 952
EcoT38I	GRGCYC	2 cut(s)	13, 489
ErhI	CCWWGG	2 cut(s)	637, 824
FaeI	CATG	4 cut(s)	485, 554, 828, 950
FatI	CATG	4 cut(s)	481, 550, 824, 946
FbaI	TGATCA	1 cut(s)	907
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	275
FokI	GGATG	1 cut(s)	519
FriOI	GRGCYC	2 cut(s)	13, 489
Fsp4HI	GCNGC	1 cut(s)	275
FspBI	CTAG	3 cut(s)	312, 710, 887
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	1 cut(s)	275
GsuI	CTGGAG	1 cut(s)	852
HaeII	RGCGCY	1 cut(s)	43
HaeIII	GGCC	2 cut(s)	583, 875
HapII	CCGG	1 cut(s)	556
HgaI	GACGC	1 cut(s)	4
HhaI	GCGC	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	4 cut(s)	485, 554, 828, 950
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	893
HinfI	GANTC	2 cut(s)	65, 244
HpaII	CCGG	1 cut(s)	556
HphI	GGTGA	4 cut(s)	98, 107, 154, 902
Hpy166II	GTNNAC	4 cut(s)	19, 31, 89, 334
Hpy188I	TCNGA	2 cut(s)	114, 491
Hpy188III	TCNNGA	9 cut(s)	187, 205, 449, 482, 692, 701, 831, 869, 887
Hpy8I	GTNNAC	4 cut(s)	19, 31, 89, 334
HpyAV	CCTTC	3 cut(s)	109, 143, 801
HpyCH4III	ACNGT	2 cut(s)	137, 338
HpyCH4IV	ACGT	2 cut(s)	27, 33
HpyCH4V	TGCA	8 cut(s)	241, 445, 604, 653, 752, 845, 950, 974
HpyF10VI	GCNNNNNNNGC	2 cut(s)	719, 935
HpyF3I	CTNAG	2 cut(s)	723, 786
HpySE526I	ACGT	2 cut(s)	27, 33
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	4 cut(s)	485, 554, 828, 950
HspAI	GCGC	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	907
Kzo9I	GATC	8 cut(s)	189, 318, 474, 478, 660, 781, 907, 943
LmnI	GCTCC	2 cut(s)	492, 633
Lsp1109I	GCAGC	1 cut(s)	261
LweI	GCATC	2 cut(s)	454, 865
MaeI	CTAG	3 cut(s)	312, 710, 887
MaeII	ACGT	2 cut(s)	27, 33
MaeIII	GTNAC	3 cut(s)	95, 160, 692
MalI	GATC	8 cut(s)	191, 320, 476, 480, 662, 783, 909, 945
MboI	GATC	8 cut(s)	189, 318, 474, 478, 660, 781, 907, 943
MboII	GAAGA	5 cut(s)	68, 135, 226, 673, 890
MflI	RGATCY	1 cut(s)	189
MhlI	GDGCHC	2 cut(s)	13, 489
MluCI	AATT	4 cut(s)	524, 677, 717, 743
MmeI	TCCRAC	2 cut(s)	100, 784
MnlI	CCTC	7 cut(s)	97, 119, 133, 471, 787, 795, 865
Mph1103I	ATGCAT	3 cut(s)	447, 754, 952
MseI	TTAA	3 cut(s)	195, 219, 746
MslI	CAYNNNNRTG	1 cut(s)	450
MspI	CCGG	1 cut(s)	556
MspR9I	CCNGG	4 cut(s)	7, 537, 557, 914
MvaI	CCWGG	3 cut(s)	7, 537, 914
MvnI	CGCG	2 cut(s)	15, 23
MwoI	GCNNNNNNNGC	2 cut(s)	719, 935
NciI	CCSGG	1 cut(s)	557
NcoI	CCATGG	1 cut(s)	824
NdeII	GATC	8 cut(s)	189, 318, 474, 478, 660, 781, 907, 943
NheI	GCTAGC	1 cut(s)	709
NlaIII	CATG	4 cut(s)	485, 554, 828, 950
NlaIV	GGNNCC	2 cut(s)	582, 635
NmuCI	GTSAC	3 cut(s)	95, 160, 692
NsiI	ATGCAT	3 cut(s)	447, 754, 952
PaeR7I	CTCGAG	1 cut(s)	791
PagI	TCATGA	1 cut(s)	481
PfeI	GAWTC	2 cut(s)	65, 244
PkrI	GCNGC	1 cut(s)	276
Psp124BI	GAGCTC	1 cut(s)	489
Psp1406I	AACGTT	1 cut(s)	33
Psp6I	CCWGG	3 cut(s)	5, 535, 912
PspGI	CCWGG	3 cut(s)	5, 535, 912
PspN4I	GGNNCC	2 cut(s)	582, 635
PspPI	GGNCC	2 cut(s)	581, 703
PspXI	VCTCGAGB	1 cut(s)	791
PstI	CTGCAG	1 cut(s)	243
PstNI	CAGNNNCTG	1 cut(s)	859
PsuI	RGATCY	1 cut(s)	189
RsaI	GTAC	3 cut(s)	259, 359, 548
RsaNI	GTAC	3 cut(s)	258, 358, 547
RseI	CAYNNNNRTG	1 cut(s)	450
SacI	GAGCTC	1 cut(s)	489
SaqAI	TTAA	3 cut(s)	195, 219, 746
SatI	GCNGC	1 cut(s)	275
Sau3AI	GATC	8 cut(s)	189, 318, 474, 478, 660, 781, 907, 943
Sau96I	GGNCC	2 cut(s)	581, 703
ScrFI	CCNGG	4 cut(s)	7, 537, 557, 914
SduI	GDGCHC	2 cut(s)	13, 489
SfaNI	GCATC	2 cut(s)	454, 865
SfcI	CTRYAG	1 cut(s)	239
Sfr274I	CTCGAG	1 cut(s)	791
SinI	GGWCC	1 cut(s)	703
SlaI	CTCGAG	1 cut(s)	791
SmiMI	CAYNNNNRTG	1 cut(s)	450
SmlI	CTYRAG	2 cut(s)	407, 791
SmoI	CTYRAG	2 cut(s)	407, 791
Sse9I	AATT	4 cut(s)	524, 677, 717, 743
SsiI	CCGC	1 cut(s)	23
SspI	AATATT	1 cut(s)	265
SspMI	CTAG	3 cut(s)	312, 710, 887
SstI	GAGCTC	1 cut(s)	489
StyD4I	CCNGG	4 cut(s)	5, 535, 555, 912
StyI	CCWWGG	2 cut(s)	637, 824
TaaI	ACNGT	2 cut(s)	137, 338
TaiI	ACGT	2 cut(s)	30, 36
TaqI	TCGA	4 cut(s)	448, 477, 792, 901
TasI	AATT	4 cut(s)	524, 677, 717, 743
TfiI	GAWTC	2 cut(s)	65, 244
Tru1I	TTAA	3 cut(s)	195, 219, 746
Tru9I	TTAA	3 cut(s)	195, 219, 746
TscAI	CASTG	2 cut(s)	142, 372
TseFI	GTSAC	3 cut(s)	95, 160, 692
TseI	GCWGC	1 cut(s)	274
Tsp45I	GTSAC	3 cut(s)	95, 160, 692
TspDTI	ATGAA	3 cut(s)	186, 309, 414
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	2 cut(s)	142, 372
VpaK11BI	GGWCC	1 cut(s)	703
XapI	RAATTY	1 cut(s)	524
XbaI	TCTAGA	1 cut(s)	886
XcmI	CCANNNNNNNNNTGG	1 cut(s)	51
XhoI	CTCGAG	1 cut(s)	791
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	3 cut(s)	312, 710, 887
ZraI	GACGTC	1 cut(s)	28
Zsp2I	ATGCAT	3 cut(s)	447, 754, 952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.