Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002707

Physical Location & Seq

Genomic Coordinates Reverse (-)

49639661 .. 49641089

Gene Structure 1429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58252

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGATGACCATCTACCCAATTGTAATAGCCCGCCTCTTTAACAAGTTCACCCCTTGCAAAAATGATGAGGAAGTTGTAGCTGTTCTAGCTCATGAGCTAGGCCATTGGAAGCTTAATCACACTGATTTTGATGGCATTTTTCAGGAAGAGAATTTGTCAGCTATGAACATCGATCCATGGTACTCCGCATATCACCGTTCTCATCCCCCGCTTGTTCAAAGGTTGGCTGCAATTGGTGATGTGGACAAGAAAGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

86

Amino Acids

9.89

Weight (kDa)

5.62

Isoelectric Point (pI)

27.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48	PF01435	19 - 44	9.5e-07	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300
malus_domestica	MD08G1087400.v1.1 MD15G1072400.v1.1 MD15G1314700.v1.1
prunus_persica	Prupe.1G425000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0357221 RchiOBHm_Chr1g0362391 RchiOBHm_Chr2g0131551 RchiOBHm_Chr6g0309321
rosa_laevigata	RLG00000009840 RLG00000010574 RLG00000021364 RLG00000031506
rosa_multiflora	Rmu_sc0003576.1_g000007 Rmu_sc0015692.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228160 Rroxscaffold_6G00412270 Rroxscaffold_7G00159490
rosa_rugosa	Rorug01G0255000 Rorug05G0444500 Rorug05G0444500 Rorug06G0371000
rosa_samantha	Rh2BG357900 Rh5AG062100 Rh5AG134700 Rh5BG310400 Rh5DG320900 Rh6AG235600 Rh6AG484400 Rh6BG493500 Rh6CG498300 Rh6DG484800
rosa_wichuraiana	Rw6G028820 Rw6G042170 Rw7G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	31, 186, 209
AclWI	GGATC	1 cut(s)	167
AcsI	RAATTY	1 cut(s)	151
AfaI	GTAC	1 cut(s)	182
AgsI	TTSAA	1 cut(s)	218
AluBI	AGCT	5 cut(s)	80, 89, 97, 112, 161
AluI	AGCT	5 cut(s)	80, 89, 97, 112, 161
AlwI	GGATC	1 cut(s)	167
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	1 cut(s)	151
AsuHPI	GGTGA	3 cut(s)	40, 185, 248
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	2 cut(s)	17, 125
BfaI	CTAG	2 cut(s)	86, 98
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bsa29I	ATCGAT	1 cut(s)	171
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	176
Bse8I	GATNNNNATC	1 cut(s)	8
BseCI	ATCGAT	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	176
BseGI	GGATG	1 cut(s)	202
BseJI	GATNNNNATC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	214
BshFI	GGCC	1 cut(s)	102
BshVI	ATCGAT	1 cut(s)	171
BsnI	GGCC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	172
Bsp19I	CCATGG	1 cut(s)	176
BspACI	CCGC	3 cut(s)	31, 186, 209
BspANI	GGCC	1 cut(s)	102
BspDI	ATCGAT	1 cut(s)	171
BspHI	TCATGA	1 cut(s)	91
BspPI	GGATC	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	176
BssMI	GATC	1 cut(s)	172
BssT1I	CCWWGG	1 cut(s)	176
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	31
BstDSI	CCRYGG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstV1I	GCAGC	1 cut(s)	214
Bsu15I	ATCGAT	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	102
BsuTUI	ATCGAT	1 cut(s)	171
BtgI	CCRYGG	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	31
CciI	TCATGA	1 cut(s)	91
ClaI	ATCGAT	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	2 cut(s)	92, 177
CviJI	RGCY	8 cut(s)	29, 80, 89, 97, 102, 112, 161, 227
CviKI_1	RGCY	8 cut(s)	29, 80, 89, 97, 102, 112, 161, 227
CviQI	GTAC	1 cut(s)	181
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	2 cut(s)	95, 180
FaiI	YATR	4 cut(s)	93, 164, 178, 190
FatI	CATG	2 cut(s)	91, 176
FauI	CCCGC	2 cut(s)	38, 216
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	2 cut(s)	86, 98
GluI	GCNGC	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	102
Hin1II	CATG	2 cut(s)	95, 180
HindIII	AAGCTT	1 cut(s)	110
HphI	GGTGA	3 cut(s)	40, 185, 248
Hpy166II	GTNNAC	2 cut(s)	48, 244
Hpy188III	TCNNGA	2 cut(s)	92, 143
Hpy8I	GTNNAC	2 cut(s)	48, 244
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4V	TGCA	2 cut(s)	57, 230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
Hsp92II	CATG	2 cut(s)	95, 180
Kzo9I	GATC	1 cut(s)	172
LpnPI	CCDG	1 cut(s)	128
Lsp1109I	GCAGC	1 cut(s)	214
MaeI	CTAG	2 cut(s)	86, 98
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	1 cut(s)	158
MfeI	CAATTG	2 cut(s)	18, 231
MluCI	AATT	3 cut(s)	18, 151, 231
MnlI	CCTC	2 cut(s)	44, 61
MseI	TTAA	2 cut(s)	39, 114
MunI	CAATTG	2 cut(s)	18, 231
MwoI	GCNNNNNNNGC	1 cut(s)	86
NcoI	CCATGG	1 cut(s)	176
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	2 cut(s)	95, 180
PagI	TCATGA	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	229
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SaqAI	TTAA	2 cut(s)	39, 114
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	1 cut(s)	172
SetI	ASST	6 cut(s)	82, 91, 99, 114, 163, 224
Sse9I	AATT	3 cut(s)	18, 151, 231
SsiI	CCGC	3 cut(s)	31, 186, 209
SspMI	CTAG	2 cut(s)	86, 98
StyI	CCWWGG	1 cut(s)	176
TaaI	ACNGT	1 cut(s)	197
TaqI	TCGA	1 cut(s)	171
TasI	AATT	3 cut(s)	18, 151, 231
Tru1I	TTAA	2 cut(s)	39, 114
Tru9I	TTAA	2 cut(s)	39, 114
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	179
TspRI	CASTG	1 cut(s)	127
XapI	RAATTY	1 cut(s)	151
XspI	CTAG	2 cut(s)	86, 98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.