Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002707

Physical Location & Seq

Genomic Coordinates Reverse (-)

52884279 .. 52885728

Gene Structure 1450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G028820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGAATCTTCAAGTGAACCTTCTTGTGTTAATTGCTGGGTTAGGTGTTCAAGATGAATATGAGGTTGTTCGGAAGGTTGGAAAAGGAAAGTACAGTGAGGTCTTCGAGGGTATAAATGTCACCAACAATGAAAAATGCGTGATCAAGATCCTTAGACCAGTCAAGAAAAAGGGAAGCACCTTAAGTGGCTCAACATCAACAAATACAGATGACAGACCTTATGTTTACAATCCAATGAAAAAGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

82

Amino Acids

9.07

Weight (kDa)

9.48

Isoelectric Point (pI)

7.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300
malus_domestica	MD08G1087400.v1.1 MD15G1072400.v1.1 MD15G1314700.v1.1
prunus_persica	Prupe.1G425000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0357221 RchiOBHm_Chr1g0362391 RchiOBHm_Chr2g0131551 RchiOBHm_Chr6g0309321
rosa_laevigata	RLG00000009840 RLG00000010574 RLG00000021364 RLG00000031506
rosa_multiflora	Rmu_sc0003576.1_g000007 Rmu_sc0015692.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228160 Rroxscaffold_6G00412270 Rroxscaffold_7G00159490
rosa_rugosa	Rorug01G0255000 Rorug05G0444500 Rorug05G0444500 Rorug06G0371000
rosa_samantha	Rh2BG357900 Rh5AG062100 Rh5AG134700 Rh5BG310400 Rh5DG320900 Rh6AG235600 Rh6AG484400 Rh6BG493500 Rh6CG498300 Rh6DG484800
rosa_wichuraiana	Rw6G028820 Rw6G042170 Rw7G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	142
AfaI	GTAC	1 cut(s)	92
AflII	CTTAAG	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	11, 50
AlwI	GGATC	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	112
BbsI	GAAGAC	1 cut(s)	94
BclI	TGATCA	1 cut(s)	141
BfrI	CTTAAG	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	94
BsaBI	GATNNNNATC	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	158
Bse8I	GATNNNNATC	1 cut(s)	146
BseJI	GATNNNNATC	1 cut(s)	146
BseNI	ACTGG	1 cut(s)	158
BseYI	CCCAGC	1 cut(s)	35
Bsp143I	GATC	2 cut(s)	141, 147
BspPI	GGATC	1 cut(s)	142
BspTI	CTTAAG	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	158
BssMI	GATC	2 cut(s)	141, 147
Bst4CI	ACNGT	1 cut(s)	95
BstAFI	CTTAAG	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	152
BstKTI	GATC	2 cut(s)	144, 150
BstMBI	GATC	2 cut(s)	141, 147
BstV2I	GAAGAC	1 cut(s)	94
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	91
CviJI	RGCY	1 cut(s)	189
CviKI_1	RGCY	1 cut(s)	189
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	2 cut(s)	143, 149
DpnII	GATC	2 cut(s)	141, 147
FaiI	YATR	3 cut(s)	60, 113, 222
FalI	AAGNNNNNCTT	1 cut(s)	35
FbaI	TGATCA	1 cut(s)	141
GsaI	CCCAGC	1 cut(s)	39
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	2 cut(s)	16, 226
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	3 cut(s)	50, 145, 163
Hpy8I	GTNNAC	2 cut(s)	16, 226
HpyAV	CCTTC	2 cut(s)	29, 67
HpyCH4III	ACNGT	1 cut(s)	95
HpyF3I	CTNAG	1 cut(s)	152
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	2 cut(s)	141, 147
LpnPI	CCDG	2 cut(s)	21, 171
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	2 cut(s)	143, 149
MboI	GATC	2 cut(s)	141, 147
MboII	GAAGA	1 cut(s)	94
MflI	RGATCY	1 cut(s)	147
MluCI	AATT	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	3 cut(s)	55, 91, 100
MseI	TTAA	2 cut(s)	29, 182
MspCI	CTTAAG	1 cut(s)	181
NdeII	GATC	2 cut(s)	141, 147
NmuCI	GTSAC	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	4
PspFI	CCCAGC	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	147
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SaqAI	TTAA	2 cut(s)	29, 182
Sau3AI	GATC	2 cut(s)	141, 147
SetI	ASST	7 cut(s)	21, 46, 66, 78, 102, 182, 220
SgeI	CNNG	9 cut(s)	23, 35, 48, 62, 118, 151, 157, 170, 175
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
Sse9I	AATT	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	95
TaqI	TCGA	1 cut(s)	105
TasI	AATT	1 cut(s)	30
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	29, 182
Tru9I	TTAA	2 cut(s)	29, 182
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	118
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	3 cut(s)	17, 69, 144
TspRI	CASTG	1 cut(s)	100
Vha464I	CTTAAG	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.