Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002707

Physical Location & Seq

Genomic Coordinates Reverse (-)

49425826 .. 49428438

Gene Structure 2613 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG357900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTCTGCTAGAGTTTTCTTCATGGTGGCGAGACCTCCCAGAGCCGATGGTGCTTCGGGAAGATTCTTCGAAGCTGGTGTTGATGGTGCCCTTACGGCGTCGTATCTACCGGATGCGTTTTCGGAGAGGACACGAGGGGCAGGGCTGGTGACGGCGACGTGTACGGCCGACTTGCCCTATTTTACTTGTGTGTGGGTGATGATGAATAAACTGACTAGGAGATTATCCAAAATACCCGATGAGGTTCAGAGTGAAATAGAGCCTTACTTTATGAATACTGCTCCTGTTGTGGAGGAGGATGGCAGGAAACTGCAGAAACTTGACTACAATACTGCGGGCTTTGTCCATACTGGTTTAACTTGCAAAAATGATGAGGAAATTGTAGCTGTTCTAGCTCGTGAGCTAGGCCATTGGAAGCTTAATCACAGTGTATACTTATTCATTTCTATACAGATCCGTACGCTGTTACACTTTGGGGGATATGCTCTCTTGAGAAACTCTAGCAGTCTGTTTCATTCTTTGGGGGATATGCAGTCCTACTTTGTTGAATGGTCTTCAATGGGTTATAATAATAATGTGCTTCAAGGAAGCACCTTAAGTGGCTCAACATCAACAAATACAGATGACAGACCTTACGTTTACAATCCAATGAAAAAAGGGATAAGGGAAGCTTGGCAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

227

Amino Acids

25.45

Weight (kDa)

6.21

Isoelectric Point (pI)

31.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48	PF01435	120 - 175	1.1e-07	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300
malus_domestica	MD08G1087400.v1.1 MD15G1072400.v1.1 MD15G1314700.v1.1
prunus_persica	Prupe.1G425000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0357221 RchiOBHm_Chr1g0362391 RchiOBHm_Chr2g0131551 RchiOBHm_Chr6g0309321
rosa_laevigata	RLG00000009840 RLG00000010574 RLG00000021364 RLG00000031506
rosa_multiflora	Rmu_sc0003576.1_g000007 Rmu_sc0015692.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228160 Rroxscaffold_6G00412270 Rroxscaffold_7G00159490
rosa_rugosa	Rorug01G0255000 Rorug05G0444500 Rorug05G0444500 Rorug06G0371000
rosa_samantha	Rh2BG357900 Rh5AG062100 Rh5AG134700 Rh5BG310400 Rh5DG320900 Rh6AG235600 Rh6AG484400 Rh6BG493500 Rh6CG498300 Rh6DG484800
rosa_wichuraiana	Rw6G028820 Rw6G042170 Rw7G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	567
AccB1I	GGYRCC	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	432
AciI	CCGC	1 cut(s)	335
AclWI	GGATC	1 cut(s)	448
AcoI	YGGCCR	1 cut(s)	165
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	2 cut(s)	163, 460
AflII	CTTAAG	1 cut(s)	595
AflIII	ACRYGT	1 cut(s)	158
AgsI	TTSAA	3 cut(s)	548, 558, 584
AjiI	CACGTC	1 cut(s)	159
AluBI	AGCT	6 cut(s)	74, 386, 395, 403, 418, 671
AluI	AGCT	6 cut(s)	74, 386, 395, 403, 418, 671
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	1 cut(s)	448
AoxI	GGCC	2 cut(s)	165, 406
AsuHPI	GGTGA	2 cut(s)	160, 208
AsuII	TTCGAA	1 cut(s)	69
BaeGI	GKGCMC	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	86
BauI	CACGAG	2 cut(s)	132, 396
BbsI	GAAGAC	1 cut(s)	546
BccI	CCATC	3 cut(s)	41, 77, 293
BceAI	ACGGC	3 cut(s)	111, 168, 180
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	5 cut(s)	9, 216, 392, 404, 501
BfmI	CTRYAG	1 cut(s)	311
BfrI	CTTAAG	1 cut(s)	595
BglI	GCCNNNNNGGC	1 cut(s)	95
BmgBI	CACGTC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	88
BmsI	GCATC	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	546
Bpu14I	TTCGAA	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	511
BsaHI	GRCGYC	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	25
BsaWI	WCCGGW	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	355
BseGI	GGATG	2 cut(s)	118, 304
BseNI	ACTGG	1 cut(s)	355
BseRI	GAGGAG	1 cut(s)	308
BseSI	GKGCMC	1 cut(s)	91
BseX3I	CGGCCG	1 cut(s)	165
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	167, 408
BshNI	GGYRCC	1 cut(s)	86
BsiEI	CGRYCG	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	110
BsiWI	CGTACG	1 cut(s)	458
BsmAI	GTCTC	1 cut(s)	25
BsnI	GGCC	2 cut(s)	167, 408
Bso31I	GGTCTC	1 cut(s)	25
Bsp119I	TTCGAA	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	453
BspACI	CCGC	1 cut(s)	335
BspANI	GGCC	2 cut(s)	167, 408
BspLI	GGNNCC	1 cut(s)	88
BspMAI	CTGCAG	1 cut(s)	315
BspPI	GGATC	1 cut(s)	448
BspT104I	TTCGAA	1 cut(s)	69
BspT107I	GGYRCC	1 cut(s)	86
BspTI	CTTAAG	1 cut(s)	595
BspTNI	GGTCTC	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	355
BssMI	GATC	1 cut(s)	453
BssNAI	GTATAC	1 cut(s)	433
BssNI	GRCGYC	1 cut(s)	98
BssSI	CACGAG	2 cut(s)	132, 396
Bst1107I	GTATAC	1 cut(s)	433
Bst2BI	CACGAG	2 cut(s)	132, 396
Bst4CI	ACNGT	1 cut(s)	428
BstACI	GRCGYC	1 cut(s)	98
BstAFI	CTTAAG	1 cut(s)	595
BstBI	TTCGAA	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	337
BstF5I	GGATG	2 cut(s)	118, 304
BstKTI	GATC	1 cut(s)	456
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	453
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 95, 392
BstSFI	CTRYAG	1 cut(s)	311
BstSLI	GKGCMC	1 cut(s)	91
BstV2I	GAAGAC	1 cut(s)	546
BstX2I	RGATCY	1 cut(s)	453
BstYI	RGATCY	1 cut(s)	453
BstZ17I	GTATAC	1 cut(s)	433
BstZI	CGGCCG	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	167, 408
BtrI	CACGTC	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	118, 304
BtsIMutI	CAGTG	1 cut(s)	433
Cac8I	GCNNGC	1 cut(s)	337
CseI	GACGC	1 cut(s)	87
Csp6I	GTAC	2 cut(s)	162, 459
CviAII	CATG	1 cut(s)	22
CviQI	GTAC	2 cut(s)	162, 459
DpnI	GATC	1 cut(s)	455
DpnII	GATC	1 cut(s)	453
EaeI	YGGCCR	1 cut(s)	165
EagI	CGGCCG	1 cut(s)	165
EclXI	CGGCCG	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	25
Eco52I	CGGCCG	1 cut(s)	165
FaeI	CATG	1 cut(s)	25
FaiI	YATR	8 cut(s)	23, 272, 348, 433, 449, 483, 530, 567
FalI	AAGNNNNNCTT	1 cut(s)	655
FatI	CATG	1 cut(s)	21
FauI	CCCGC	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	432
FokI	GGATG	2 cut(s)	125, 311
FspBI	CTAG	5 cut(s)	9, 216, 392, 404, 501
HaeIII	GGCC	2 cut(s)	167, 408
HapII	CCGG	1 cut(s)	110
HgaI	GACGC	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	1 cut(s)	25
HindIII	AAGCTT	2 cut(s)	416, 669
HinfI	GANTC	1 cut(s)	63
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	2 cut(s)	160, 208
Hpy166II	GTNNAC	3 cut(s)	162, 433, 640
Hpy188I	TCNGA	2 cut(s)	124, 249
Hpy188III	TCNNGA	3 cut(s)	57, 398, 490
Hpy8I	GTNNAC	3 cut(s)	162, 433, 640
Hpy99I	CGWCG	2 cut(s)	103, 160
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4IV	ACGT	2 cut(s)	158, 636
HpyCH4V	TGCA	3 cut(s)	313, 363, 532
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 95, 392
HpySE526I	ACGT	2 cut(s)	158, 636
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	1 cut(s)	25
Kzo9I	GATC	1 cut(s)	453
LmnI	GCTCC	1 cut(s)	286
LpnPI	CCDG	9 cut(s)	52, 60, 123, 126, 131, 289, 297, 336, 662
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	5 cut(s)	9, 216, 392, 404, 501
MaeII	ACGT	2 cut(s)	158, 636
MaeIII	GTNAC	2 cut(s)	148, 465
MalI	GATC	1 cut(s)	455
MboI	GATC	1 cut(s)	453
MboII	GAAGA	4 cut(s)	10, 58, 72, 546
MflI	RGATCY	1 cut(s)	453
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	1 cut(s)	378
MnlI	CCTC	7 cut(s)	45, 120, 128, 235, 286, 289, 367
MseI	TTAA	3 cut(s)	356, 420, 596
MspCI	CTTAAG	1 cut(s)	595
MspI	CCGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	3 cut(s)	50, 95, 392
NdeII	GATC	1 cut(s)	453
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	1 cut(s)	88
NmuCI	GTSAC	1 cut(s)	148
NspV	TTCGAA	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	63
Pfl23II	CGTACG	1 cut(s)	458
PsiI	TTATAA	1 cut(s)	567
PspLI	CGTACG	1 cut(s)	458
PspN4I	GGNNCC	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	315
PsuI	RGATCY	1 cut(s)	453
RsaI	GTAC	2 cut(s)	163, 460
RsaNI	GTAC	2 cut(s)	162, 459
SaqAI	TTAA	3 cut(s)	356, 420, 596
Sau3AI	GATC	1 cut(s)	453
SduI	GDGCHC	1 cut(s)	91
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	311
SfuI	TTCGAA	1 cut(s)	69
SmlI	CTYRAG	2 cut(s)	490, 595
SmoI	CTYRAG	2 cut(s)	490, 595
Sse9I	AATT	1 cut(s)	378
SsiI	CCGC	1 cut(s)	335
SspMI	CTAG	5 cut(s)	9, 216, 392, 404, 501
TaaI	ACNGT	1 cut(s)	428
TaiI	ACGT	2 cut(s)	161, 639
TaqI	TCGA	1 cut(s)	69
TasI	AATT	1 cut(s)	378
TfiI	GAWTC	1 cut(s)	63
Tru1I	TTAA	3 cut(s)	356, 420, 596
Tru9I	TTAA	3 cut(s)	356, 420, 596
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	6 cut(s)	10, 218, 287, 430, 503, 665
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	1 cut(s)	433
Vha464I	CTTAAG	1 cut(s)	595
XmiI	GTMKAC	1 cut(s)	432
XspI	CTAG	5 cut(s)	9, 216, 392, 404, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.