Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002707

Physical Location & Seq

Genomic Coordinates Forward (+)

74559343 .. 74565429

Gene Structure 6087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021364

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGCCGTCAACGGTGGATGAAGCCGGAAAATTCATGGTCACCATCTCACCTCCACAGTCATCTTTGGTCTTCCTCAAAGAGTTTCCCGATCTGCTCTTCACATACGATCCGGATTCTCGACCCAAAACCTTCCATTGGCCGCTCCAAATCTATGCCGGATCGGTTTTTGCAATGTCGCCGGAGCCTAGCTCGCTCTGGTTGCTGTGTGATGTGGACCACCGTTCTGATCCTGATGGCGACGGCGACGGAGGCAACACGGTGAGGCTGAGTGACGTCGACGACGCTGCTTTTCCCTTGTGGCTTTCCTTTTCCGGACAGAGGCGATCTGGGCAGAGGCAACGCTTCGAAGCTCCATGCTCCAAGTTCGGGCCTGGGCTCCCCTCGGACGCTTCAACATCACTTAAACGGCGTCATTATCCAAGTTCGGGTCTGGGCTTTGCTCGGACGCTTCAACAATTGGCTCGTGGGTTGGAGCTGAGTGGAAAACGATTCCTCTGGGTGGCGAGATCTCCCAGAGCCGATGGTGCTTCGGGAAGATTCTTCGAAGCTGGTGTTGATGGTGCCCTTACGGCGTCATATCTACTGGATGGGTTTTCGGAGAGGACACGAGGGGCAGGGCTGGTGACGGCGACGTGTACGGCGGACTTGTCCTATTTTACTTGGGGTGATGTTGTTCAAGTTGACACTTGGGTTAGTGCCCCAGGGAAGAATGTGTGTGGACTGACTAGGAGATTATCCAAAATACCTAATGAGGTTCGGAGTGAAATAGAGCCTTACTTTATGAATTCTGCTCCTGTTGTGGAGGAGGATGGCAGGAAACTGCAGAAACTTGACGACAATATTGCGGGCTTTTGCAAAAATGATGAGGAAATTGTAGCTGTTCTAGCTCATGAGCTAGGCCATTGGAAGCTTAATCACAGTGTATACTTATTCATTTCTATACAGATCCGTACGCTGTTACAGTTTGGGGGATATGCTCTCCTGAGAAACTCTAGCAGTCTGTTTCATTCTTTGGGGGATATGCAGTCCTACTTTGTTGAATGGTCTTCAATGGGTTATAATAATAATGTGCTTCAGGGAAGCACCTTAAGTGGCTCAACATCAACAAATACAAATGACAGACCTTACGTTTACAATCCAATGAAAAAAGGGATAAGGGAAGTTTGGCAGGATTTACTTGTTCAATTAGGCAAAATGGGGCACAACATAAACCCCCCATCTGATGATTTTAGAACATGCACAAAAAGATCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

419

Amino Acids

46.43

Weight (kDa)

6.26

Isoelectric Point (pI)

52.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48	PF01435	284 - 339	1.1e-09	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300
malus_domestica	MD08G1087400.v1.1 MD15G1072400.v1.1 MD15G1314700.v1.1
prunus_persica	Prupe.1G425000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0357221 RchiOBHm_Chr1g0362391 RchiOBHm_Chr2g0131551 RchiOBHm_Chr6g0309321
rosa_laevigata	RLG00000009840 RLG00000010574 RLG00000021364 RLG00000031506
rosa_multiflora	Rmu_sc0003576.1_g000007 Rmu_sc0015692.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228160 Rroxscaffold_6G00412270 Rroxscaffold_7G00159490
rosa_rugosa	Rorug01G0255000 Rorug05G0444500 Rorug05G0444500 Rorug06G0371000
rosa_samantha	Rh2BG357900 Rh5AG062100 Rh5AG134700 Rh5BG310400 Rh5DG320900 Rh6AG235600 Rh6AG484400 Rh6BG493500 Rh6CG498300 Rh6DG484800
rosa_wichuraiana	Rw6G028820 Rw6G042170 Rw7G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1059
AatII	GACGTC	1 cut(s)	276
AccB1I	GGYRCC	1 cut(s)	560
AccBSI	CCGCTC	1 cut(s)	142
AccI	GTMKAC	2 cut(s)	276, 924
AccIII	TCCGGA	2 cut(s)	109, 311
AciI	CCGC	3 cut(s)	140, 641, 845
AclWI	GGATC	4 cut(s)	101, 166, 221, 940
AcoI	YGGCCR	1 cut(s)	137
AcsI	RAATTY	2 cut(s)	29, 784
AcuI	CTGAAG	1 cut(s)	1058
AcyI	GRCGYC	3 cut(s)	273, 409, 572
AfaI	GTAC	2 cut(s)	637, 952
AfiI	CCNNNNNNNGG	5 cut(s)	135, 318, 366, 425, 499
AflII	CTTAAG	1 cut(s)	1087
AflIII	ACRYGT	1 cut(s)	632
AgsI	TTSAA	6 cut(s)	393, 452, 677, 1040, 1050, 1184
AjiI	CACGTC	1 cut(s)	633
AjnI	CCWGG	2 cut(s)	370, 700
AluBI	AGCT	8 cut(s)	189, 350, 475, 548, 878, 887, 895, 910
AluI	AGCT	8 cut(s)	189, 350, 475, 548, 878, 887, 895, 910
AlwI	GGATC	4 cut(s)	101, 166, 221, 940
Aor13HI	TCCGGA	2 cut(s)	109, 311
AoxI	GGCC	3 cut(s)	137, 368, 898
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	2 cut(s)	29, 784
AspS9I	GGNCC	2 cut(s)	214, 368
AsuHPI	GGTGA	5 cut(s)	31, 39, 271, 634, 677
AsuII	TTCGAA	2 cut(s)	345, 543
AvaII	GGWCC	1 cut(s)	214
BaeGI	GKGCMC	3 cut(s)	565, 700, 1203
BanI	GGYRCC	1 cut(s)	560
BanII	GRGCYC	1 cut(s)	378
BauI	CACGAG	2 cut(s)	462, 606
BbsI	GAAGAC	2 cut(s)	61, 1038
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	7 cut(s)	50, 227, 515, 551, 581, 803, 1225
BceAI	ACGGC	5 cut(s)	256, 422, 585, 642, 654
BcgI	CGANNNNNNTGC	4 cut(s)	266, 300, 824, 858
BciT130I	CCWGG	2 cut(s)	372, 702
BfaI	CTAG	5 cut(s)	186, 726, 884, 896, 993
BfmI	CTRYAG	1 cut(s)	821
BfrI	CTTAAG	1 cut(s)	1087
BglI	GCCNNNNNGGC	1 cut(s)	569
BglII	AGATCT	2 cut(s)	506, 1247
BisI	GCNGC	2 cut(s)	140, 285
BlsI	GCNGC	2 cut(s)	141, 286
Bme1390I	CCNGG	2 cut(s)	372, 702
Bme18I	GGWCC	1 cut(s)	214
BmgBI	CACGTC	1 cut(s)	633
BmgT120I	GGNCC	2 cut(s)	214, 368
BmiI	GGNNCC	3 cut(s)	183, 377, 562
BmrFI	CCNGG	2 cut(s)	372, 702
BpiI	GAAGAC	2 cut(s)	61, 1038
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
Bpu14I	TTCGAA	2 cut(s)	345, 543
BsaHI	GRCGYC	3 cut(s)	273, 409, 572
BsaJI	CCNNGG	4 cut(s)	371, 381, 700, 701
BsaWI	WCCGGW	2 cut(s)	109, 311
Bsc4I	CCNNNNNNNGG	5 cut(s)	135, 318, 366, 425, 499
Bse1I	ACTGG	1 cut(s)	588
Bse3DI	GCAATG	1 cut(s)	177
BseAI	TCCGGA	2 cut(s)	109, 311
BseBI	CCWGG	2 cut(s)	372, 702
BseDI	CCNNGG	4 cut(s)	371, 381, 700, 701
BseGI	GGATG	3 cut(s)	22, 592, 814
BseLI	CCNNNNNNNGG	5 cut(s)	135, 318, 366, 425, 499
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	3 cut(s)	257, 467, 974
BseNI	ACTGG	1 cut(s)	588
BseRI	GAGGAG	1 cut(s)	818
BseSI	GKGCMC	3 cut(s)	565, 700, 1203
BseXI	GCAGC	1 cut(s)	271
BshFI	GGCC	3 cut(s)	139, 370, 900
BshNI	GGYRCC	1 cut(s)	560
BsiSI	CCGG	5 cut(s)	24, 110, 156, 179, 312
BsiWI	CGTACG	1 cut(s)	950
BslI	CCNNNNNNNGG	5 cut(s)	135, 318, 366, 425, 499
BsnI	GGCC	3 cut(s)	139, 370, 900
Bsp119I	TTCGAA	2 cut(s)	345, 543
Bsp1286I	GDGCHC	4 cut(s)	378, 565, 700, 1203
Bsp13I	TCCGGA	2 cut(s)	109, 311
Bsp143I	GATC	8 cut(s)	88, 106, 158, 226, 323, 506, 945, 1247
BspACI	CCGC	3 cut(s)	140, 641, 845
BspANI	GGCC	3 cut(s)	139, 370, 900
BspCNI	CTCAG	3 cut(s)	258, 468, 975
BspEI	TCCGGA	2 cut(s)	109, 311
BspHI	TCATGA	1 cut(s)	889
BspLI	GGNNCC	3 cut(s)	183, 377, 562
BspMAI	CTGCAG	1 cut(s)	825
BspPI	GGATC	4 cut(s)	101, 166, 221, 940
BspQI	GCTCTTC	1 cut(s)	101
BspT104I	TTCGAA	2 cut(s)	345, 543
BspT107I	GGYRCC	1 cut(s)	560
BspTI	CTTAAG	1 cut(s)	1087
BsrBI	CCGCTC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	588
BssECI	CCNNGG	4 cut(s)	371, 381, 700, 701
BssMI	GATC	8 cut(s)	88, 106, 158, 226, 323, 506, 945, 1247
BssNAI	GTATAC	1 cut(s)	925
BssNI	GRCGYC	3 cut(s)	273, 409, 572
BssSI	CACGAG	2 cut(s)	462, 606
Bst1107I	GTATAC	1 cut(s)	925
Bst2BI	CACGAG	2 cut(s)	462, 606
Bst2UI	CCWGG	2 cut(s)	372, 702
Bst4CI	ACNGT	6 cut(s)	13, 57, 221, 259, 920, 963
Bst6I	CTCTTC	1 cut(s)	101
BstACI	GRCGYC	3 cut(s)	273, 409, 572
BstAFI	CTTAAG	1 cut(s)	1087
BstBI	TTCGAA	2 cut(s)	345, 543
BstC8I	GCNNGC	2 cut(s)	191, 847
BstDEI	CTNAG	3 cut(s)	266, 476, 983
BstEII	GGTNACC	1 cut(s)	37
BstF5I	GGATG	3 cut(s)	22, 592, 814
BstKTI	GATC	8 cut(s)	91, 109, 161, 229, 326, 509, 948, 1250
BstMBI	GATC	8 cut(s)	88, 106, 158, 226, 323, 506, 945, 1247
BstMWI	GCNNNNNNNGC	7 cut(s)	190, 199, 249, 328, 524, 569, 884
BstNI	CCWGG	2 cut(s)	372, 702
BstNSI	RCATGY	1 cut(s)	1239
BstPI	GGTNACC	1 cut(s)	37
BstSCI	CCNGG	2 cut(s)	370, 700
BstSFI	CTRYAG	1 cut(s)	821
BstSLI	GKGCMC	3 cut(s)	565, 700, 1203
BstV1I	GCAGC	1 cut(s)	271
BstV2I	GAAGAC	2 cut(s)	61, 1038
BstX2I	RGATCY	3 cut(s)	506, 945, 1247
BstYI	RGATCY	3 cut(s)	506, 945, 1247
BstZ17I	GTATAC	1 cut(s)	925
BsuRI	GGCC	3 cut(s)	139, 370, 900
BtrI	CACGTC	1 cut(s)	633
BtsCI	GGATG	3 cut(s)	22, 592, 814
BtsIMutI	CAGTG	1 cut(s)	925
Cac8I	GCNNGC	2 cut(s)	191, 847
CciI	TCATGA	1 cut(s)	889
Cfr13I	GGNCC	2 cut(s)	214, 368
CseI	GACGC	5 cut(s)	290, 395, 398, 454, 561
Csp6I	GTAC	2 cut(s)	636, 951
CviAII	CATG	4 cut(s)	34, 354, 890, 1236
CviQI	GTAC	2 cut(s)	636, 951
DdeI	CTNAG	3 cut(s)	266, 476, 983
DpnI	GATC	8 cut(s)	90, 108, 160, 228, 325, 508, 947, 1249
DpnII	GATC	8 cut(s)	88, 106, 158, 226, 323, 506, 945, 1247
EaeI	YGGCCR	1 cut(s)	137
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
EciI	GGCGGA	1 cut(s)	656
Eco24I	GRGCYC	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	1058
Eco91I	GGTNACC	1 cut(s)	37
EcoO65I	GGTNACC	1 cut(s)	37
EcoRI	GAATTC	1 cut(s)	784
EcoRII	CCWGG	2 cut(s)	370, 700
EcoT38I	GRGCYC	1 cut(s)	378
FaeI	CATG	4 cut(s)	37, 357, 893, 1239
FatI	CATG	4 cut(s)	33, 353, 889, 1235
FauI	CCCGC	1 cut(s)	838
FblI	GTMKAC	2 cut(s)	276, 924
Fnu4HI	GCNGC	2 cut(s)	140, 285
FokI	GGATG	3 cut(s)	29, 599, 821
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	2 cut(s)	140, 285
FspBI	CTAG	5 cut(s)	186, 726, 884, 896, 993
GluI	GCNGC	2 cut(s)	140, 285
HaeIII	GGCC	3 cut(s)	139, 370, 900
HapII	CCGG	5 cut(s)	24, 110, 156, 179, 312
HgaI	GACGC	5 cut(s)	290, 395, 398, 454, 561
Hin1I	GRCGYC	3 cut(s)	273, 409, 572
Hin1II	CATG	4 cut(s)	37, 357, 893, 1239
HincII	GTYRAC	3 cut(s)	9, 277, 682
HindII	GTYRAC	3 cut(s)	9, 277, 682
HindIII	AAGCTT	1 cut(s)	908
HinfI	GANTC	3 cut(s)	113, 489, 537
HpaII	CCGG	5 cut(s)	24, 110, 156, 179, 312
HphI	GGTGA	5 cut(s)	31, 39, 271, 634, 677
Hpy166II	GTNNAC	8 cut(s)	9, 214, 277, 636, 682, 719, 925, 1132
Hpy188I	TCNGA	6 cut(s)	226, 385, 444, 598, 759, 1222
Hpy188III	TCNNGA	8 cut(s)	86, 110, 117, 230, 312, 531, 890, 982
Hpy8I	GTNNAC	8 cut(s)	9, 214, 277, 636, 682, 719, 925, 1132
Hpy99I	CGWCG	6 cut(s)	242, 248, 278, 281, 284, 634
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	6 cut(s)	13, 57, 221, 259, 920, 963
HpyCH4IV	ACGT	3 cut(s)	273, 632, 1128
HpyCH4V	TGCA	5 cut(s)	170, 823, 855, 1024, 1239
HpyF10VI	GCNNNNNNNGC	7 cut(s)	190, 199, 249, 328, 524, 569, 884
HpyF3I	CTNAG	3 cut(s)	266, 476, 983
HpySE526I	ACGT	3 cut(s)	273, 632, 1128
Hsp92I	GRCGYC	3 cut(s)	273, 409, 572
Hsp92II	CATG	4 cut(s)	37, 357, 893, 1239
Kpn2I	TCCGGA	2 cut(s)	109, 311
Kzo9I	GATC	8 cut(s)	88, 106, 158, 226, 323, 506, 945, 1247
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	7 cut(s)	147, 181, 355, 362, 381, 472, 796
Lsp1109I	GCAGC	1 cut(s)	271
MaeI	CTAG	5 cut(s)	186, 726, 884, 896, 993
MaeII	ACGT	3 cut(s)	273, 632, 1128
MaeIII	GTNAC	4 cut(s)	37, 269, 622, 957
MalI	GATC	8 cut(s)	90, 108, 160, 228, 325, 508, 947, 1249
MbiI	CCGCTC	1 cut(s)	142
MboI	GATC	8 cut(s)	88, 106, 158, 226, 323, 506, 945, 1247
MboII	GAAGA	6 cut(s)	61, 88, 532, 546, 718, 1038
MfeI	CAATTG	1 cut(s)	455
MflI	RGATCY	3 cut(s)	506, 945, 1247
MhlI	GDGCHC	4 cut(s)	378, 565, 700, 1203
MluCI	AATT	5 cut(s)	29, 455, 784, 870, 1184
MmeI	TCCRAC	1 cut(s)	450
MroI	TCCGGA	2 cut(s)	109, 311
MseI	TTAA	3 cut(s)	402, 912, 1088
MspCI	CTTAAG	1 cut(s)	1087
MspI	CCGG	5 cut(s)	24, 110, 156, 179, 312
MspR9I	CCNGG	2 cut(s)	372, 702
MunI	CAATTG	1 cut(s)	455
MvaI	CCWGG	2 cut(s)	372, 702
MwoI	GCNNNNNNNGC	7 cut(s)	190, 199, 249, 328, 524, 569, 884
NdeII	GATC	8 cut(s)	88, 106, 158, 226, 323, 506, 945, 1247
NlaIII	CATG	4 cut(s)	37, 357, 893, 1239
NlaIV	GGNNCC	3 cut(s)	183, 377, 562
NmuCI	GTSAC	3 cut(s)	37, 269, 622
NspI	RCATGY	1 cut(s)	1239
NspV	TTCGAA	2 cut(s)	345, 543
PagI	TCATGA	1 cut(s)	889
PasI	CCCWGGG	1 cut(s)	701
PciSI	GCTCTTC	1 cut(s)	101
PfeI	GAWTC	3 cut(s)	113, 489, 537
Pfl23II	CGTACG	1 cut(s)	950
PkrI	GCNGC	2 cut(s)	141, 286
PsiI	TTATAA	1 cut(s)	1059
Psp6I	CCWGG	2 cut(s)	370, 700
PspEI	GGTNACC	1 cut(s)	37
PspGI	CCWGG	2 cut(s)	370, 700
PspLI	CGTACG	1 cut(s)	950
PspN4I	GGNNCC	3 cut(s)	183, 377, 562
PspPI	GGNCC	2 cut(s)	214, 368
PstI	CTGCAG	1 cut(s)	825
PsuI	RGATCY	3 cut(s)	506, 945, 1247
RsaI	GTAC	2 cut(s)	637, 952
RsaNI	GTAC	2 cut(s)	636, 951
SalI	GTCGAC	1 cut(s)	275
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	3 cut(s)	402, 912, 1088
SatI	GCNGC	2 cut(s)	140, 285
Sau3AI	GATC	8 cut(s)	88, 106, 158, 226, 323, 506, 945, 1247
Sau96I	GGNCC	2 cut(s)	214, 368
ScrFI	CCNGG	2 cut(s)	372, 702
SduI	GDGCHC	4 cut(s)	378, 565, 700, 1203
SfcI	CTRYAG	1 cut(s)	821
SfuI	TTCGAA	2 cut(s)	345, 543
SgrDI	CGTCGACG	1 cut(s)	275
SinI	GGWCC	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	1087
SmoI	CTYRAG	1 cut(s)	1087
Sse9I	AATT	5 cut(s)	29, 455, 784, 870, 1184
SsiI	CCGC	3 cut(s)	140, 641, 845
SspI	AATATT	1 cut(s)	841
SspMI	CTAG	5 cut(s)	186, 726, 884, 896, 993
StyD4I	CCNGG	2 cut(s)	370, 700
TaaI	ACNGT	6 cut(s)	13, 57, 221, 259, 920, 963
TaiI	ACGT	3 cut(s)	276, 635, 1131
TaqI	TCGA	4 cut(s)	118, 276, 345, 543
TasI	AATT	5 cut(s)	29, 455, 784, 870, 1184
TauI	GCSGC	1 cut(s)	142
TfiI	GAWTC	3 cut(s)	113, 489, 537
Tru1I	TTAA	3 cut(s)	402, 912, 1088
Tru9I	TTAA	3 cut(s)	402, 912, 1088
TscAI	CASTG	1 cut(s)	925
TseFI	GTSAC	3 cut(s)	37, 269, 622
TseI	GCWGC	1 cut(s)	284
Tsp45I	GTSAC	3 cut(s)	37, 269, 622
TspDTI	ATGAA	6 cut(s)	22, 33, 797, 922, 995, 1157
TspGWI	ACGGA	2 cut(s)	261, 938
TspRI	CASTG	1 cut(s)	925
Vha464I	CTTAAG	1 cut(s)	1087
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	2 cut(s)	29, 784
XceI	RCATGY	1 cut(s)	1239
XmiI	GTMKAC	2 cut(s)	276, 924
XspI	CTAG	5 cut(s)	186, 726, 884, 896, 993
ZraI	GACGTC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.