Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002707

Physical Location & Seq

Genomic Coordinates Forward (+)

36468974 .. 36470399

Gene Structure 1426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0255000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCCCTATTGCCAAACCTCCCAGATGTCCTGATCATCCAACCACCACCAGCCTTCATATCTTTCGAATCCGACTTCACCCAGAAGTTCAACATCCTCCGAGCATGGGAGTCGCCACTCCCTCTGGACCAGTTCCTCACCACCCACGCCCAATCAGTCCATGCCCTCCTCTGCCGCGCCGAGACTCCGATCAACGCCGACGTCCTCCGGCTGCTACCGACCCTGAAGATCGTGGTGTCCGCCAGCACCGGCGCCGACCAAGTGGACAAAGCCGAGTGCCGGCGGCGTGGGATTGCGGTGACCAACGCAGGGAATGCGTACGCGGAAGATGTTGCTGATATCGCTGTTGGGTTGTTCATCGATGTGTTTCGGAAGATCTCAGCAGCTGATTGGTATGTGAGAAAAGGGCTTTGGAGTAGCAAAGGAGATTATCCTCTTGGTTCCAAGATAGGTGGAAAGCGAGTTGGTATTGTTGGATTGGGAAGCATTGGCTATGAGGTTGCCAAAAGACTCGAGGCCTTTGGCTGCAAGATCTCATACAACTCAAGAAGCGAAAGGCCGTCTTTGTCATACACCTTCTATTCCAATGTCAGTGAACTTGCAGCAGACAGTGACGCTCTCGTAATCTGTTGTGGGTTAACAGACCAGACCCGCCACATGATCAACAAGGAAGTCTTATCTGCATTGGGAAAAGATGGAGTTGTAGTTAATATAGGGCGCGGGGCAATTATTGATGAGAAAGAATTGGTCAAGTGTTTGGTGAATGGAGAGATTAGAGGTGCTGGTTTGGATGTGTTTGAGAATGAGCCTCATATACCAAAAGAGCTCGTGGCAATGGACAACGTTGTTCTGTCTCCACATAAGGCTGTTTATACGGTAGAGTCTGTCAAGAAAGGAGGTGAAGTAATGATCGCCAATTTGGAAGCTTTCTTCTCCAATAAACCTTTGGTCACTCCAGTCATATATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051604 GO:0070011 GO:0071586 GO:0071704 GO:0080120 GO:0098827 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Peptidase_M48 Peptidase_M48_N

Protein Analysis

323

Amino Acids

35.03

Weight (kDa)

6.01

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	46 - 320	1.5e-22	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	117 - 289	1.9e-51	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300
malus_domestica	MD08G1087400.v1.1 MD15G1072400.v1.1 MD15G1314700.v1.1
prunus_persica	Prupe.1G425000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0357221 RchiOBHm_Chr1g0362391 RchiOBHm_Chr2g0131551 RchiOBHm_Chr6g0309321
rosa_laevigata	RLG00000009840 RLG00000010574 RLG00000021364 RLG00000031506
rosa_multiflora	Rmu_sc0003576.1_g000007 Rmu_sc0015692.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228160 Rroxscaffold_6G00412270 Rroxscaffold_7G00159490
rosa_rugosa	Rorug01G0255000 Rorug05G0444500 Rorug05G0444500 Rorug06G0371000
rosa_samantha	Rh2BG357900 Rh5AG062100 Rh5AG134700 Rh5BG310400 Rh5DG320900 Rh6AG235600 Rh6AG484400 Rh6BG493500 Rh6CG498300 Rh6DG484800
rosa_wichuraiana	Rw6G028820 Rw6G042170 Rw7G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	204
AccB1I	GGYRCC	1 cut(s)	251
AccII	CGCG	3 cut(s)	177, 323, 720
AciI	CCGC	7 cut(s)	175, 240, 283, 296, 323, 652, 720
AclI	AACGTT	1 cut(s)	843
AcuI	CTGAAG	1 cut(s)	245
AcyI	GRCGYC	2 cut(s)	201, 252
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	3 cut(s)	106, 279, 309
AgsI	TTSAA	1 cut(s)	91
AjuI	GAANNNNNNNTTGG	2 cut(s)	394, 426
AluBI	AGCT	3 cut(s)	386, 826, 926
AluI	AGCT	3 cut(s)	386, 826, 926
Alw21I	GWGCWC	1 cut(s)	828
Alw26I	GTCTC	2 cut(s)	176, 858
AlwNI	CAGNNNCTG	1 cut(s)	386
Ama87I	CYCGRG	1 cut(s)	512
AoxI	GGCC	3 cut(s)	3, 516, 557
ApeKI	GCWGC	4 cut(s)	211, 383, 525, 602
AspLEI	GCGC	3 cut(s)	179, 254, 720
AspS9I	GGNCC	2 cut(s)	4, 127
AsuHPI	GGTGA	5 cut(s)	70, 130, 310, 772, 911
AsuII	TTCGAA	1 cut(s)	66
AvaI	CYCGRG	1 cut(s)	512
AvaII	GGWCC	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	828
BauI	CACGAG	1 cut(s)	827
Bbv12I	GWGCWC	1 cut(s)	828
BbvI	GCAGC	4 cut(s)	198, 395, 512, 614
BccI	CCATC	1 cut(s)	689
BceAI	ACGGC	1 cut(s)	544
BcgI	CGANNNNNNTGC	2 cut(s)	93, 127
BclI	TGATCA	2 cut(s)	33, 660
BcoDI	GTCTC	2 cut(s)	176, 858
BfoI	RGCGCY	1 cut(s)	255
BglII	AGATCT	2 cut(s)	375, 531
BisI	GCNGC	6 cut(s)	175, 212, 284, 384, 526, 603
BlsI	GCNGC	6 cut(s)	176, 213, 285, 385, 527, 604
Bme18I	GGWCC	1 cut(s)	127
BmeT110I	CYCGRG	1 cut(s)	512
BmgT120I	GGNCC	2 cut(s)	4, 127
BmiI	GGNNCC	2 cut(s)	253, 442
BpmI	CTGGAG	1 cut(s)	939
Bpu14I	TTCGAA	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	529
Bsa29I	ATCGAT	1 cut(s)	360
BsaHI	GRCGYC	2 cut(s)	201, 252
BsaXI	ACNNNNNCTCC	4 cut(s)	690, 720, 888, 918
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 279, 309
Bse118I	RCCGGY	2 cut(s)	248, 279
Bse1I	ACTGG	2 cut(s)	130, 956
Bse3DI	GCAATG	1 cut(s)	840
BseCI	ATCGAT	1 cut(s)	360
BseGI	GGATG	3 cut(s)	36, 93, 796
BseLI	CCNNNNNNNGG	3 cut(s)	106, 279, 309
BseMI	GCAATG	1 cut(s)	840
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	2 cut(s)	130, 956
BseRI	GAGGAG	1 cut(s)	158
BseXI	GCAGC	4 cut(s)	198, 395, 512, 614
Bsh1236I	CGCG	3 cut(s)	177, 323, 720
BshFI	GGCC	3 cut(s)	5, 518, 559
BshNI	GGYRCC	1 cut(s)	251
BshVI	ATCGAT	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	828
BsiHKCI	CYCGRG	1 cut(s)	512
BsiSI	CCGG	3 cut(s)	208, 249, 280
BsiWI	CGTACG	1 cut(s)	318
BslI	CCNNNNNNNGG	3 cut(s)	106, 279, 309
BsmAI	GTCTC	2 cut(s)	176, 858
BsmI	GAATGC	1 cut(s)	319
BsnI	GGCC	3 cut(s)	5, 518, 559
BsoBI	CYCGRG	1 cut(s)	512
Bsp119I	TTCGAA	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	828
Bsp143I	GATC	7 cut(s)	33, 189, 228, 375, 531, 660, 909
BspACI	CCGC	7 cut(s)	175, 240, 283, 296, 323, 652, 720
BspANI	GGCC	3 cut(s)	5, 518, 559
BspCNI	CTCAG	1 cut(s)	392
BspDI	ATCGAT	1 cut(s)	360
BspFNI	CGCG	3 cut(s)	177, 323, 720
BspLI	GGNNCC	2 cut(s)	253, 442
BspT104I	TTCGAA	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	840
BsrFI	RCCGGY	2 cut(s)	248, 279
BsrI	ACTGG	2 cut(s)	130, 956
BssAI	RCCGGY	2 cut(s)	248, 279
BssMI	GATC	7 cut(s)	33, 189, 228, 375, 531, 660, 909
BssNI	GRCGYC	2 cut(s)	201, 252
BssSI	CACGAG	1 cut(s)	827
Bst2BI	CACGAG	1 cut(s)	827
Bst4CI	ACNGT	2 cut(s)	611, 877
BstACI	GRCGYC	2 cut(s)	201, 252
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstBI	TTCGAA	1 cut(s)	66
BstC8I	GCNNGC	2 cut(s)	244, 281
BstDEI	CTNAG	1 cut(s)	379
BstEII	GGTNACC	1 cut(s)	298
BstF5I	GGATG	3 cut(s)	36, 93, 796
BstFNI	CGCG	3 cut(s)	177, 323, 720
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	3 cut(s)	179, 254, 720
BstKTI	GATC	7 cut(s)	36, 192, 231, 378, 534, 663, 912
BstMAI	GTCTC	2 cut(s)	176, 858
BstMBI	GATC	7 cut(s)	33, 189, 228, 375, 531, 660, 909
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 341
BstPI	GGTNACC	1 cut(s)	298
BstUI	CGCG	3 cut(s)	177, 323, 720
BstV1I	GCAGC	4 cut(s)	198, 395, 512, 614
BstX2I	RGATCY	2 cut(s)	375, 531
BstYI	RGATCY	2 cut(s)	375, 531
Bsu15I	ATCGAT	1 cut(s)	360
BsuRI	GGCC	3 cut(s)	5, 518, 559
BsuTUI	ATCGAT	1 cut(s)	360
BtsCI	GGATG	3 cut(s)	36, 93, 796
BtsIMutI	CAGTG	2 cut(s)	598, 616
Cac8I	GCNNGC	2 cut(s)	244, 281
CaiI	CAGNNNCTG	1 cut(s)	386
CfoI	GCGC	3 cut(s)	179, 254, 720
Cfr10I	RCCGGY	2 cut(s)	248, 279
Cfr13I	GGNCC	2 cut(s)	4, 127
ClaI	ATCGAT	1 cut(s)	360
CseI	GACGC	1 cut(s)	623
Csp6I	GTAC	1 cut(s)	319
CspCI	CAANNNNNGTGG	2 cut(s)	433, 468
CviAII	CATG	3 cut(s)	105, 161, 658
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	1 cut(s)	379
DinI	GGCGCC	1 cut(s)	253
DpnI	GATC	7 cut(s)	35, 191, 230, 377, 533, 662, 911
DpnII	GATC	7 cut(s)	33, 189, 228, 375, 531, 660, 909
EciI	GGCGGA	1 cut(s)	229
Ecl136II	GAGCTC	1 cut(s)	826
Eco147I	AGGCCT	1 cut(s)	518
Eco24I	GRGCYC	1 cut(s)	828
Eco32I	GATATC	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	127
Eco53kI	GAGCTC	1 cut(s)	826
Eco57I	CTGAAG	1 cut(s)	245
Eco88I	CYCGRG	1 cut(s)	512
Eco91I	GGTNACC	1 cut(s)	298
EcoICRI	GAGCTC	1 cut(s)	826
EcoO65I	GGTNACC	1 cut(s)	298
EcoRV	GATATC	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	828
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
FaeI	CATG	3 cut(s)	108, 164, 661
FalI	AAGNNNNNCTT	4 cut(s)	547, 579, 659, 691
FatI	CATG	3 cut(s)	104, 160, 657
FauI	CCCGC	2 cut(s)	659, 713
FbaI	TGATCA	2 cut(s)	33, 660
Fnu4HI	GCNGC	6 cut(s)	175, 212, 284, 384, 526, 603
FokI	GGATG	3 cut(s)	23, 80, 803
FriOI	GRGCYC	1 cut(s)	828
Fsp4HI	GCNGC	6 cut(s)	175, 212, 284, 384, 526, 603
GlaI	GCGC	3 cut(s)	178, 253, 719
GluI	GCNGC	6 cut(s)	175, 212, 284, 384, 526, 603
GsuI	CTGGAG	1 cut(s)	939
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	3 cut(s)	5, 518, 559
HapII	CCGG	3 cut(s)	208, 249, 280
HgaI	GACGC	1 cut(s)	623
HhaI	GCGC	3 cut(s)	179, 254, 720
Hin1I	GRCGYC	2 cut(s)	201, 252
Hin1II	CATG	3 cut(s)	108, 164, 661
Hin6I	GCGC	3 cut(s)	177, 252, 718
HinP1I	GCGC	3 cut(s)	177, 252, 718
HincII	GTYRAC	1 cut(s)	639
HindII	GTYRAC	1 cut(s)	639
HindIII	AAGCTT	1 cut(s)	924
HinfI	GANTC	5 cut(s)	68, 110, 184, 510, 881
HpaI	GTTAAC	1 cut(s)	639
HpaII	CCGG	3 cut(s)	208, 249, 280
HphI	GGTGA	5 cut(s)	70, 130, 310, 772, 911
Hpy166II	GTNNAC	3 cut(s)	265, 596, 639
Hpy188I	TCNGA	4 cut(s)	73, 101, 189, 372
Hpy188III	TCNNGA	4 cut(s)	31, 125, 546, 889
Hpy8I	GTNNAC	3 cut(s)	265, 596, 639
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	2 cut(s)	64, 586
HpyCH4III	ACNGT	2 cut(s)	611, 877
HpyCH4IV	ACGT	2 cut(s)	201, 843
HpyCH4V	TGCA	3 cut(s)	528, 602, 683
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 341
HpyF3I	CTNAG	1 cut(s)	379
HpySE526I	ACGT	2 cut(s)	201, 843
Hsp92I	GRCGYC	2 cut(s)	201, 252
Hsp92II	CATG	3 cut(s)	108, 164, 661
HspAI	GCGC	3 cut(s)	177, 252, 718
KasI	GGCGCC	1 cut(s)	251
KroI	GCCGGC	1 cut(s)	279
KroNI	GCCGGC	1 cut(s)	281
Ksp22I	TGATCA	2 cut(s)	33, 660
KspAI	GTTAAC	1 cut(s)	639
Kzo9I	GATC	7 cut(s)	33, 189, 228, 375, 531, 660, 909
Lsp1109I	GCAGC	4 cut(s)	198, 395, 512, 614
MaeII	ACGT	2 cut(s)	201, 843
MaeIII	GTNAC	3 cut(s)	298, 611, 949
MalI	GATC	7 cut(s)	35, 191, 230, 377, 533, 662, 911
MboI	GATC	7 cut(s)	33, 189, 228, 375, 531, 660, 909
MboII	GAAGA	4 cut(s)	238, 338, 385, 922
MflI	RGATCY	2 cut(s)	375, 531
MhlI	GDGCHC	1 cut(s)	828
MluCI	AATT	3 cut(s)	726, 743, 916
Mly113I	GGCGCC	1 cut(s)	252
MlyI	GAGTC	4 cut(s)	119, 178, 504, 890
MmeI	TCCRAC	3 cut(s)	64, 96, 454
MroNI	GCCGGC	1 cut(s)	279
MseI	TTAA	2 cut(s)	638, 708
MslI	CAYNNNNRTG	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	3 cut(s)	208, 249, 280
Mva1269I	GAATGC	1 cut(s)	319
MvnI	CGCG	3 cut(s)	177, 323, 720
MwoI	GCNNNNNNNGC	2 cut(s)	314, 341
NaeI	GCCGGC	1 cut(s)	281
NarI	GGCGCC	1 cut(s)	252
NdeII	GATC	7 cut(s)	33, 189, 228, 375, 531, 660, 909
NgoMIV	GCCGGC	1 cut(s)	279
NlaIII	CATG	3 cut(s)	108, 164, 661
NlaIV	GGNNCC	2 cut(s)	253, 442
NmeAIII	GCCGAG	2 cut(s)	205, 298
NmuCI	GTSAC	3 cut(s)	298, 611, 949
NspV	TTCGAA	1 cut(s)	66
PaeR7I	CTCGAG	1 cut(s)	512
PceI	AGGCCT	1 cut(s)	518
PctI	GAATGC	1 cut(s)	319
PdiI	GCCGGC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	68
Pfl23II	CGTACG	1 cut(s)	318
PkrI	GCNGC	6 cut(s)	176, 213, 285, 385, 527, 604
PleI	GAGTC	4 cut(s)	118, 178, 504, 889
PluTI	GGCGCC	1 cut(s)	255
PpsI	GAGTC	4 cut(s)	118, 178, 504, 889
Psp124BI	GAGCTC	1 cut(s)	828
Psp1406I	AACGTT	1 cut(s)	843
PspEI	GGTNACC	1 cut(s)	298
PspLI	CGTACG	1 cut(s)	318
PspN4I	GGNNCC	2 cut(s)	253, 442
PspPI	GGNCC	2 cut(s)	4, 127
PspXI	VCTCGAGB	1 cut(s)	512
PstNI	CAGNNNCTG	1 cut(s)	386
PsuI	RGATCY	2 cut(s)	375, 531
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	362
SacI	GAGCTC	1 cut(s)	828
SaqAI	TTAA	2 cut(s)	638, 708
SatI	GCNGC	6 cut(s)	175, 212, 284, 384, 526, 603
Sau3AI	GATC	7 cut(s)	33, 189, 228, 375, 531, 660, 909
Sau96I	GGNCC	2 cut(s)	4, 127
SchI	GAGTC	4 cut(s)	119, 178, 504, 890
SduI	GDGCHC	1 cut(s)	828
SfoI	GGCGCC	1 cut(s)	253
Sfr274I	CTCGAG	1 cut(s)	512
SfuI	TTCGAA	1 cut(s)	66
SgrAI	CRCCGGYG	1 cut(s)	248
SinI	GGWCC	1 cut(s)	127
SlaI	CTCGAG	1 cut(s)	512
SmiMI	CAYNNNNRTG	1 cut(s)	362
SmlI	CTYRAG	2 cut(s)	512, 544
SmoI	CTYRAG	2 cut(s)	512, 544
Sse9I	AATT	3 cut(s)	726, 743, 916
SseBI	AGGCCT	1 cut(s)	518
SsiI	CCGC	7 cut(s)	175, 240, 283, 296, 323, 652, 720
SspDI	GGCGCC	1 cut(s)	251
SstI	GAGCTC	1 cut(s)	828
StuI	AGGCCT	1 cut(s)	518
TaaI	ACNGT	2 cut(s)	611, 877
TaiI	ACGT	2 cut(s)	204, 846
TaqI	TCGA	3 cut(s)	66, 360, 513
TasI	AATT	3 cut(s)	726, 743, 916
TauI	GCSGC	2 cut(s)	177, 286
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	2 cut(s)	638, 708
Tru9I	TTAA	2 cut(s)	638, 708
TscAI	CASTG	2 cut(s)	598, 616
TseFI	GTSAC	3 cut(s)	298, 611, 949
TseI	GCWGC	4 cut(s)	211, 383, 525, 602
Tsp45I	GTSAC	3 cut(s)	298, 611, 949
TspDTI	ATGAA	2 cut(s)	46, 346
TspRI	CASTG	2 cut(s)	598, 616
VpaK11BI	GGWCC	1 cut(s)	127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	943
XhoI	CTCGAG	1 cut(s)	512
ZraI	GACGTC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.