Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002707

Physical Location & Seq

Genomic Coordinates Forward (+)

31983526 .. 31984960

Gene Structure 1435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1314700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGGGGCAGGGTGATTACGAGGTGGTGAAGAAGGTTGGGAGAGGAAAGTATAGTGAAGTGTTTGAAGGGGTTCACTGTACCGATAACGAAAAATGTATTATCAAGATTCTCAAACCTGTTAAAAAGAAGAAGATTAAGAGGGAGATAAAAATACTGCAGAATCTCTGTGGGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

59

Amino Acids

6.58

Weight (kDa)

9.55

Isoelectric Point (pI)

25.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	6 - 55	2.3e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300
malus_domestica	MD08G1087400.v1.1 MD15G1072400.v1.1 MD15G1314700.v1.1
prunus_persica	Prupe.1G425000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0357221 RchiOBHm_Chr1g0362391 RchiOBHm_Chr2g0131551 RchiOBHm_Chr6g0309321
rosa_laevigata	RLG00000009840 RLG00000010574 RLG00000021364 RLG00000031506
rosa_multiflora	Rmu_sc0003576.1_g000007 Rmu_sc0015692.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228160 Rroxscaffold_6G00412270 Rroxscaffold_7G00159490
rosa_rugosa	Rorug01G0255000 Rorug05G0444500 Rorug05G0444500 Rorug06G0371000
rosa_samantha	Rh2BG357900 Rh5AG062100 Rh5AG134700 Rh5BG310400 Rh5DG320900 Rh6AG235600 Rh6AG484400 Rh6BG493500 Rh6CG498300 Rh6DG484800
rosa_wichuraiana	Rw6G028820 Rw6G042170 Rw7G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	79
AgsI	TTSAA	1 cut(s)	65
Asp700I	GAANNNNTTC	1 cut(s)	69
AsuHPI	GGTGA	2 cut(s)	23, 37
BfmI	CTRYAG	1 cut(s)	155
BspMAI	CTGCAG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	77
BstSFI	CTRYAG	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	78
CviJI	RGCY	1 cut(s)	174
CviKI_1	RGCY	1 cut(s)	174
CviQI	GTAC	1 cut(s)	78
FaiI	YATR	1 cut(s)	51
HinfI	GANTC	2 cut(s)	106, 160
HphI	GGTGA	2 cut(s)	23, 37
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	25, 59
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4V	TGCA	1 cut(s)	157
LpnPI	CCDG	1 cut(s)	129
MboII	GAAGA	3 cut(s)	40, 139, 142
MnlI	CCTC	3 cut(s)	13, 35, 132
MroXI	GAANNNNTTC	1 cut(s)	69
MseI	TTAA	2 cut(s)	120, 135
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	106, 160
PstI	CTGCAG	1 cut(s)	159
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SaqAI	TTAA	2 cut(s)	120, 135
SetI	ASST	3 cut(s)	24, 36, 118
SfcI	CTRYAG	1 cut(s)	155
SgeI	CNNG	4 cut(s)	20, 31, 115, 128
TaaI	ACNGT	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	106, 160
Tru1I	TTAA	2 cut(s)	120, 135
Tru9I	TTAA	2 cut(s)	120, 135
TscAI	CASTG	1 cut(s)	80
TspRI	CASTG	1 cut(s)	80
XmnI	GAANNNNTTC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.