Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002707

Physical Location & Seq

Genomic Coordinates Reverse (-)

13778074 .. 13785308

Gene Structure 7235 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG134700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGCGAAATCATGAGCAGAACAGCAGAAAAGCTTGGAACTTTAAAGAGGTGGCGAGACCTCCCAGAGCCGATGGTGCTTCGGGAAGATTCTTCGAAGCTGGTGTTGATGGTGCCCTTACGGCGTCGTATCTACCGGATGGGTTTTCGGAGAGGACACGAGGGGCAGGGCTGGTGACGGCGACGTGTACGGCCGACTTGCCCTATTTTACTTGTGTGTGGGTGATGATGAATAAACTGACTAGGAGATTATCCAAAATACCCGATGAGGTTCGGAGTGAAATAGAGCCTTACTTTATGAATACTGCTCCTGTTGTGGAGGAGGATGGCAGGAAACTGCAGAAACTTGACTACAATACTGCGGGCTTTGTCCGTACTGGTTTAACTTGCAAAAATGATGAGGAAATTGTAGCTGTTCTAGCTCGTGAGCTAGGCCATTGGAAGCTTAATCACAGTGTATACTTATTCATTTCTATACAGATTCGTACACTGTTACACTTTGGGGGATATGCTCTCTTGAGAAACTCTAGCAGTCTGTTTCATTCTTTGGGGGATATGCAGTCCTACTTTGTTGAATGGTCTTCAATGGGTTATAATAATAATGTGCTTCAAGGAAGCACCTTAAGTGGCTCAACATCAACAAATACAGATGACAGACCTTACGTTTGCAATCCAATGAAAAAAGGGATAAGGGAAGTTTGGCAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000036 GO:0003674 GO:0003824 GO:0004312 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0046394 GO:0048037 GO:0051192 GO:0071704 GO:0072330 GO:0140104 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko01100 ko01212 map00061 map01100 map01212

Pfam Domains

Protein Families

Acyl-ACP_TE Acyl-thio_N

Protein Analysis

235

Amino Acids

26.54

Weight (kDa)

7.69

Isoelectric Point (pI)

30.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48	PF01435	128 - 183	1.4e-07	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002707)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300 FvH4_2g33300
malus_domestica	MD08G1087400.v1.1 MD15G1072400.v1.1 MD15G1314700.v1.1
prunus_persica	Prupe.1G425000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0357221 RchiOBHm_Chr1g0362391 RchiOBHm_Chr2g0131551 RchiOBHm_Chr6g0309321
rosa_laevigata	RLG00000009840 RLG00000010574 RLG00000021364 RLG00000031506
rosa_multiflora	Rmu_sc0003576.1_g000007 Rmu_sc0015692.1_g000002
rosa_roxburghii	Rroxscaffold_3G00228160 Rroxscaffold_6G00412270 Rroxscaffold_7G00159490
rosa_rugosa	Rorug01G0255000 Rorug05G0444500 Rorug05G0444500 Rorug06G0371000
rosa_samantha	Rh2BG357900 Rh5AG062100 Rh5AG134700 Rh5BG310400 Rh5DG320900 Rh6AG235600 Rh6AG484400 Rh6BG493500 Rh6CG498300 Rh6DG484800
rosa_wichuraiana	Rw6G028820 Rw6G042170 Rw7G020100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	591
AccB1I	GGYRCC	1 cut(s)	110
AccI	GTMKAC	1 cut(s)	456
AciI	CCGC	1 cut(s)	359
AcoI	YGGCCR	1 cut(s)	189
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	3 cut(s)	187, 373, 484
AflII	CTTAAG	1 cut(s)	619
AflIII	ACRYGT	1 cut(s)	182
AgsI	TTSAA	3 cut(s)	572, 582, 608
AjiI	CACGTC	1 cut(s)	183
AluBI	AGCT	6 cut(s)	32, 98, 410, 419, 427, 442
AluI	AGCT	6 cut(s)	32, 98, 410, 419, 427, 442
Alw26I	GTCTC	1 cut(s)	49
AoxI	GGCC	2 cut(s)	189, 430
ArsI	GACNNNNNNTTYG	2 cut(s)	645, 677
AsuHPI	GGTGA	2 cut(s)	184, 232
AsuII	TTCGAA	1 cut(s)	93
BaeGI	GKGCMC	1 cut(s)	115
BanI	GGYRCC	1 cut(s)	110
BauI	CACGAG	2 cut(s)	156, 420
BbsI	GAAGAC	1 cut(s)	570
BccI	CCATC	4 cut(s)	65, 101, 131, 317
BceAI	ACGGC	3 cut(s)	135, 192, 204
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	4 cut(s)	240, 416, 428, 525
BfmI	CTRYAG	1 cut(s)	335
BfrI	CTTAAG	1 cut(s)	619
BglI	GCCNNNNNGGC	1 cut(s)	119
BmgBI	CACGTC	1 cut(s)	183
BmiI	GGNNCC	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	570
Bpu14I	TTCGAA	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	535
BsaHI	GRCGYC	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	49
BsaWI	WCCGGW	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	379
BseGI	GGATG	2 cut(s)	142, 328
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	1 cut(s)	332
BseSI	GKGCMC	1 cut(s)	115
BseX3I	CGGCCG	1 cut(s)	189
Bsh1285I	CGRYCG	1 cut(s)	192
BshFI	GGCC	2 cut(s)	191, 432
BshNI	GGYRCC	1 cut(s)	110
BsiEI	CGRYCG	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	49
BsnI	GGCC	2 cut(s)	191, 432
Bso31I	GGTCTC	1 cut(s)	49
Bsp119I	TTCGAA	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	115
BspACI	CCGC	1 cut(s)	359
BspANI	GGCC	2 cut(s)	191, 432
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	112
BspMAI	CTGCAG	1 cut(s)	339
BspT104I	TTCGAA	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	110
BspTI	CTTAAG	1 cut(s)	619
BspTNI	GGTCTC	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	379
BssNAI	GTATAC	1 cut(s)	457
BssNI	GRCGYC	1 cut(s)	122
BssSI	CACGAG	2 cut(s)	156, 420
Bst1107I	GTATAC	1 cut(s)	457
Bst2BI	CACGAG	2 cut(s)	156, 420
Bst4CI	ACNGT	2 cut(s)	452, 489
BstACI	GRCGYC	1 cut(s)	122
BstAFI	CTTAAG	1 cut(s)	619
BstBI	TTCGAA	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	361
BstF5I	GGATG	2 cut(s)	142, 328
BstMAI	GTCTC	1 cut(s)	49
BstMCI	CGRYCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 119, 416
BstSFI	CTRYAG	1 cut(s)	335
BstSLI	GKGCMC	1 cut(s)	115
BstV2I	GAAGAC	1 cut(s)	570
BstZ17I	GTATAC	1 cut(s)	457
BstZI	CGGCCG	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	191, 432
BtrI	CACGTC	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	142, 328
BtsIMutI	CAGTG	2 cut(s)	457, 485
Cac8I	GCNNGC	1 cut(s)	361
CciI	TCATGA	1 cut(s)	10
CseI	GACGC	1 cut(s)	111
Csp6I	GTAC	3 cut(s)	186, 372, 483
CviAII	CATG	1 cut(s)	11
CviQI	GTAC	3 cut(s)	186, 372, 483
DraI	TTTAAA	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	189
EagI	CGGCCG	1 cut(s)	189
EclXI	CGGCCG	1 cut(s)	189
Eco31I	GGTCTC	1 cut(s)	49
Eco52I	CGGCCG	1 cut(s)	189
FaeI	CATG	1 cut(s)	14
FaiI	YATR	7 cut(s)	12, 296, 457, 473, 507, 554, 591
FatI	CATG	1 cut(s)	10
FauI	CCCGC	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	456
FokI	GGATG	2 cut(s)	149, 335
FspBI	CTAG	4 cut(s)	240, 416, 428, 525
HaeIII	GGCC	2 cut(s)	191, 432
HapII	CCGG	1 cut(s)	134
HgaI	GACGC	1 cut(s)	111
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	1 cut(s)	14
HindIII	AAGCTT	2 cut(s)	30, 440
HinfI	GANTC	2 cut(s)	87, 478
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	2 cut(s)	184, 232
Hpy166II	GTNNAC	3 cut(s)	186, 457, 485
Hpy188I	TCNGA	2 cut(s)	148, 273
Hpy188III	TCNNGA	4 cut(s)	11, 81, 422, 514
Hpy8I	GTNNAC	3 cut(s)	186, 457, 485
Hpy99I	CGWCG	2 cut(s)	127, 184
HpyCH4III	ACNGT	2 cut(s)	452, 489
HpyCH4IV	ACGT	2 cut(s)	182, 660
HpyCH4V	TGCA	4 cut(s)	337, 387, 556, 666
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 119, 416
HpySE526I	ACGT	2 cut(s)	182, 660
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	1 cut(s)	14
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	9 cut(s)	76, 84, 147, 150, 155, 313, 321, 360, 686
MaeI	CTAG	4 cut(s)	240, 416, 428, 525
MaeII	ACGT	2 cut(s)	182, 660
MaeIII	GTNAC	2 cut(s)	172, 489
MboII	GAAGA	3 cut(s)	82, 96, 570
MhlI	GDGCHC	1 cut(s)	115
MluCI	AATT	1 cut(s)	402
MnlI	CCTC	8 cut(s)	40, 69, 144, 152, 259, 310, 313, 391
MseI	TTAA	4 cut(s)	42, 380, 444, 620
MspCI	CTTAAG	1 cut(s)	619
MspI	CCGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	3 cut(s)	74, 119, 416
NlaIII	CATG	1 cut(s)	14
NlaIV	GGNNCC	1 cut(s)	112
NmuCI	GTSAC	1 cut(s)	172
NspV	TTCGAA	1 cut(s)	93
PagI	TCATGA	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	87, 478
PsiI	TTATAA	1 cut(s)	591
PspN4I	GGNNCC	1 cut(s)	112
PstI	CTGCAG	1 cut(s)	339
RsaI	GTAC	3 cut(s)	187, 373, 484
RsaNI	GTAC	3 cut(s)	186, 372, 483
SaqAI	TTAA	4 cut(s)	42, 380, 444, 620
SduI	GDGCHC	1 cut(s)	115
SfcI	CTRYAG	1 cut(s)	335
SfuI	TTCGAA	1 cut(s)	93
SmlI	CTYRAG	2 cut(s)	514, 619
SmoI	CTYRAG	2 cut(s)	514, 619
Sse9I	AATT	1 cut(s)	402
SsiI	CCGC	1 cut(s)	359
SspMI	CTAG	4 cut(s)	240, 416, 428, 525
TaaI	ACNGT	2 cut(s)	452, 489
TaiI	ACGT	2 cut(s)	185, 663
TaqI	TCGA	1 cut(s)	93
TasI	AATT	1 cut(s)	402
TfiI	GAWTC	2 cut(s)	87, 478
Tru1I	TTAA	4 cut(s)	42, 380, 444, 620
Tru9I	TTAA	4 cut(s)	42, 380, 444, 620
TscAI	CASTG	2 cut(s)	457, 492
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	5 cut(s)	242, 311, 454, 527, 689
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	2 cut(s)	457, 492
Vha464I	CTTAAG	1 cut(s)	619
XmiI	GTMKAC	1 cut(s)	456
XspI	CTAG	4 cut(s)	240, 416, 428, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.